CDC-Authored Genomics and Precision Health Publications Database

---

Last data update: May 30, 2025. (Total: 6717 publications)

All Cancer Diabetes Economic Equity Environmental FHH HLBS ID Implementation ND PGx PI Rare RCH dataset

Filtered By: Select to fine-tune your search Year Journal

Records 1-15 (of 15 Records)

Query Trace: Shepard J[original query]
Evaluation of the 2022 West Nile virus forecasting challenge, USA Harp RD , Holcomb KM , Retkute R , Prusokiene A , Prusokas A , Ertem Z , Ajelli M , Kummer AG , Litvinova M , Merler S , Piontti APY , Poletti P , Vespignani A , Wilke ABB , Zardini A , Smith KH , Armstrong P , DeFelice N , Keyel A , Shepard J , Smith R , Tyre A , Humphreys J , Cohnstaedt LW , Hosseini S , Scoglio C , Gorris ME , Barnard M , Moser SK , Spencer JA , McCarter MSJ , Lee C , Nolan MS , Barker CM , Staples JE , Nett RJ , Johansson MA . Parasit Vectors 2025 18 (1) 152
Genetic drift and purifying selection shape within-host influenza A virus populations during natural swine infections VanInsberghe D , McBride DS , DaSilva J , Stark TJ , Lau MSY , Shepard SS , Barnes JR , Bowman AS , Lowen AC , Koelle K . PLoS Pathog 2024 20 (4) e1012131
Genomic surveillance for SARS-CoV-2 variants: Circulation of Omicron lineages - United States, January 2022-May 2023 Ma KC , Shirk P , Lambrou AS , Hassell N , Zheng XY , Payne AB , Ali AR , Batra D , Caravas J , Chau R , Cook PW , Howard D , Kovacs NA , Lacek KA , Lee JS , MacCannell DR , Malapati L , Mathew S , Mittal N , Nagilla RR , Parikh R , Paul P , Rambo-Martin BL , Shepard SS , Sheth M , Wentworth DE , Winn A , Hall AJ , Silk BJ , Thornburg N , Kondor R , Scobie HM , Paden CR . MMWR Morb Mortal Wkly Rep 2023 72 (24) 651-656
Author Correction: Direct RNA Sequencing of the Coding Complete Influenza A Virus Genome. Keller MW , Rambo-Martin BL , Wilson MM , Ridenour CA , Shepard SS , Stark TJ , Neuhaus EB , Dugan VG , Wentworth DE , Barnes JR . Sci Rep 2018 8 (1) 15746
SARS-CoV-2 Delta-Omicron Recombinant Viruses, United States. Lacek KA , Rambo-Martin BL , Batra D , Zheng XY , Hassell N , Sakaguchi H , Peacock T , Groves N , Keller M , Wilson MM , Sheth M , Davis ML , Borroughs M , Gerhart J , Shepard SS , Cook PW , Lee J , Wentworth DE , Barnes JR , Kondor R , Paden CR . Emerg Infect Dis 2022 28 (7) 1442-1445
The Structure and Immune Regulatory Implications of the Ubiquitin-Like Tandem Domain Within an Avian 2'-5' Oligoadenylate Synthetase-Like Protein. Shepard JD , Freitas BT , Rodriguez SE , Scholte FEM , Baker K , Hutchison MR , Longo JE , Miller HC , O'Boyle BM , Tandon A , Zhao P , Grimsey NJ , Wells L , Bergeron É , Pegan SD . Front Immunol 2021 12 794664
Novel and extendable genotyping system for human respiratory syncytial virus based on whole-genome sequence analysis. Chen J , Qiu X , Avadhanula V , Shepard SS , Kim DK , Hixson J , Piedra PA , Bahl J . Influenza Other Respir Viruses 2021 16 (3) 492-500
Phylogenetic diversity of Mycobacterium tuberculosis in two geographically distinct locations in Botswana - The Kopanyo Study. Click ES , Finlay A , Oeltmann JE , Basotli J , Modongo C , Boyd R , Wen XJ , Shepard J , Moonan PK , Zetola N . Infect Genet Evol 2020 81 104232
Direct RNA Sequencing of the Coding Complete Influenza A Virus Genome. Keller MW , Rambo-Martin BL , Wilson MM , Ridenour CA , Shepard SS , Stark TJ , Neuhaus EB , Dugan VG , Wentworth DE , Barnes JR . Sci Rep 2018 8 (1) 14408
Active Ebola Virus Replication and Heterogeneous Evolutionary Rates in EVD Survivors. Whitmer SLM , Ladner JT , Wiley MR , Patel K , Dudas G , Rambaut A , Sahr F , Prieto K , Shepard SS , Carmody E , Knust B , Naidoo D , Deen G , Formenty P , Nichol ST , Palacios G , Stroher U . Cell Rep 2018 22 (5) 1159-1168
Shifting clade distribution, reassortment, and emergence of new subtypes of highly pathogenic avian influenza A(H5) viruses collected in Vietnamese poultry from 2012 to 2015. Nguyen DT , Jang Y , Nguyen TD , Jones J , Shepard SS , Yang H , Gerloff N , Fabrizio T , Nguyen LV , Inui K , Yang G , Creanga A , Wang L , Mai DT , Thor S , Stevens J , To TL , Wentworth DE , Nguyen T , Pham DV , Bryant JE , Davis CT . J Virol 2016 91 (5)
Viral deep sequencing needs an adaptive approach: IRMA, the iterative refinement meta-assembler. Shepard SS , Meno S , Bahl J , Wilson MM , Barnes J , Neuhaus E . BMC Genomics 2016 17 (1) 708
Preliminary Evaluation of the Effect of Investigational Ebola Virus Disease Treatments on Viral Genome Sequences. Whitmer SL , Albarino C , Shepard SS , Dudas G , Sheth M , Brown SC , Cannon D , Erickson BR , Gibbons A , Schuh A , Sealy T , Ervin E , Frace M , Uyeki TM , Nichol ST , Stroher U . J Infect Dis 2016 214 S333-S341
Improving pandemic influenza risk assessment. Russell CA , Kasson PM , Donis RO , Riley S , Dunbar J , Rambaut A , Asher J , Burke S , Davis CT , Garten RJ , Gnanakaran S , Hay SI , Herfst S , Lewis NS , Lloyd-Smith JO , Macken CA , Maurer-Stroh S , Neuhaus E , Parrish CR , Pepin KM , Shepard SS , Smith DL , Suarez DL , Trock SC , Widdowson MA , George DB , Lipsitch M , Bloom JD . Elife 2014 3 e03883
LABEL: fast and accurate lineage assignment with assessment of H5N1 and H9N2 influenza A hemagglutinins. Shepard SS , Davis CT , Bahl J , Rivailler P , York IA , Donis RO . PLoS One 2014 9 (1) e86921