CDC-Authored Genomics and Precision Health Publications Database
Last data update: Dec 02, 2024. (Total: 6432 publications)
| Query Trace: Rota P[original query] |
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| Building quality control for molecular assays in the global measles and rubella laboratory network
Bankamp B , Anderson R , Hao L , Lopareva E , Chen MH , Kim G , Beard RS , Mori Y , Otsuki N , Ryo A , Rota PA . Vaccines (Basel) 2024 12 (8) 
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| The global measles and rubella laboratory network supports high-quality surveillance
Rota PA , Evans R , Ben Mamou MC , Rey-Benito G , Sangal L , Dosseh A , Ghoniem A , Byabamazima CR , Demanou M , Anderson R , Kim G , Bankamp B , Beard RS , Crooke SN , Ramachandran S , Penedos A , Stambos V , Nicholson S , Featherstone D , Mulders MN . Vaccines (Basel) 2024 12 (8)
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| Global update on measles molecular epidemiology
Bankamp B , Kim G , Hart D , Beck A , Ben Mamou M , Penedos A , Zhang Y , Evans R , Rota PA . Vaccines (Basel) 2024 12 (7)
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| Evaluation of the sensitivity of a measles diagnostic real-time RT-PCR assay incorporating recently observed priming mismatch variants, 2024
Beck AS , Lopareva EN , Hwang H , Hart D , de Almeida M , Anderson R , Rota PA , Bankamp B . Euro Surveill 2024 29 (28)
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| Epidemiologic and genetic characteristics of mumps viruses isolated in China from 1995 to 2010.
Cui A , Zhu Z , Chen M , Zheng H , Liu L , Wang Y , Ma Y , Wang C , Fang X , Li P , Guan R , Wang S , Zhou J , Zheng L , Gao H , Ding Z , Li L , Bo F , Sun Z , Zhang Z , Feng D , He J , Chen H , Jin L , Rota PA , Xu W . Infect Genet Evol 2014 21 384-90 |
| Brain tropism acquisition: The spatial dynamics and evolution of a measles virus collective infectious unit that drove lethal subacute sclerosing panencephalitis
Yousaf I , Hannon WW , Donohue RC , Pfaller CK , Yadav K , Dikdan RJ , Tyagi S , Schroeder DC , Shieh WJ , Rota PA , Feder AF , Cattaneo R . PLoS Pathog 2023 19 (12) e1011817
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| Measles virus transmission patterns and public health responses during Operation Allies Welcome: a descriptive epidemiological study
Masters NB , Beck AS , Mathis AD , Leung J , Raines K , Paul P , Stanley SE , Weg AL , Pieracci EG , Gearhart S , Jumabaeva M , Bankamp B , Rota PA , Sugerman DE , Gastañaduy PA . Lancet Public Health 2023 8 (8) e618-e628
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| VPipe: an Automated Bioinformatics Platform for Assembly and Management of Viral Next-Generation Sequencing Data.
Wagner DD , Marine RL , Ramos E , Ng TFF , Castro CJ , Okomo-Adhiambo M , Harvey K , Doho G , Kelly R , Jain Y , Tatusov RL , Silva H , Rota PA , Khan AN , Oberste MS . Microbiol Spectr 2022 10 (2) e0256421
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| 2021 Taxonomic update of phylum Negarnaviricota (Riboviria: Orthornavirae), including the large orders Bunyavirales and Mononegavirales.
Kuhn JH , Adkins S , Agwanda BR , Al Kubrusli R , Alkhovsky Aльxoвcкий Cepгeй Bлaдимиpoвич SV , Amarasinghe GK , Avšič-Županc T , Ayllón MA , Bahl J , Balkema-Buschmann A , Ballinger MJ , Basler CF , Bavari S , Beer M , Bejerman N , Bennett AJ , Bente DA , Bergeron É , Bird BH , Blair CD , Blasdell KR , Blystad DR , Bojko J , Borth WB , Bradfute S , Breyta R , Briese T , Brown PA , Brown JK , Buchholz UJ , Buchmeier MJ , Bukreyev A , Burt F , Büttner C , Calisher CH , Cao 曹孟籍 M , Casas I , Chandran K , Charrel RN , Cheng Q , Chiaki 千秋祐也 Y , Chiapello M , Choi IR , Ciuffo M , Clegg JCS , Crozier I , Dal Bó E , de la Torre JC , de Lamballerie X , de Swart RL , Debat H , Dheilly NM , Di Cicco E , Di Paola N , Di Serio F , Dietzgen RG , Digiaro M , Dolnik O , Drebot MA , Drexler JF , Dundon WG , Duprex WP , Dürrwald R , Dye JM , Easton AJ , Ebihara 海老原秀喜 H , Elbeaino T , Ergünay K , Ferguson HW , Fooks AR , Forgia M , Formenty PBH , Fránová J , Freitas-Astúa J , Fu 付晶晶 J , Fürl S , Gago-Zachert S , Gāo 高福 GF , García ML , García-Sastre A , Garrison AR , Gaskin T , Gonzalez JJ , Griffiths A , Goldberg TL , Groschup MH , Günther S , Hall RA , Hammond J , Han 韩彤 T , Hepojoki J , Hewson R , Hong 洪健 J , Hong 洪霓 N , Hongo 本郷誠治 S , Horie 堀江真行 M , Hu JS , Hu T , Hughes HR , Hüttner F , Hyndman TH , Ilyas M , Jalkanen R , Jiāng 姜道宏 D , Jonson GB , Junglen S , Kadono 上遠野冨士夫 F , Kaukinen KH , Kawate M , Klempa B , Klingström J , Kobinger G , Koloniuk I , Kondō 近藤秀樹 H , Koonin EV , Krupovic M , Kubota 久保田健嗣 K , Kurath G , Laenen L , Lambert AJ , Langevin SL , Lee B , Lefkowitz EJ , Leroy EM , Li 李邵蓉 S , Li 李龙辉 L , Lǐ 李建荣 J , Liu 刘华珍 H , Lukashevich IS , Maes P , de Souza WM , Marklewitz M , Marshall SH , Marzano SL , Massart S , McCauley JW , Melzer M , Mielke-Ehret N , Miller KM , Ming TJ , Mirazimi A , Mordecai GJ , Mühlbach HP , Mühlberger E , Naidu R , Natsuaki 夏秋知英 T , Navarro JA , Netesov Heтёcoв Cepгeй Bиктopoвич SV , Neumann G , Nowotny N , Nunes MRT , Olmedo-Velarde A , Palacios G , Pallás V , Pályi B , Papa Άννα Παπά A , Paraskevopoulou Σοφία Παρασκευοπούλου S , Park AC , Parrish CR , Patterson DA , Pauvolid-Corrêa A , Pawęska JT , Payne S , Peracchio C , Pérez DR , Postler TS , Qi 亓立莹 L , Radoshitzky SR , Resende RO , Reyes CA , Rima BK , Luna GR , Romanowski V , Rota P , Rubbenstroth D , Rubino L , Runstadler JA , Sabanadzovic S , Sall AA , Salvato MS , Sang R , Sasaya 笹谷孝英 T , Schulze AD , Schwemmle M , Shi 施莽 M , Shí 石晓宏 X , Shí 石正丽 Z , Shimomoto 下元祥史 Y , Shirako Y , Siddell SG , Simmonds P , Sironi M , Smagghe G , Smither S , Song 송진원 JW , Spann K , Spengler JR , Stenglein MD , Stone DM , Sugano J , Suttle CA , Tabata A , Takada 高田礼人 A , Takeuchi 竹内繁治 S , Tchouassi DP , Teffer A , Tesh RB , Thornburg NJ , Tomitaka 冨高保弘 Y , Tomonaga 朝長啓造 K , Tordo N , Torto B , Towner JS , Tsuda 津田新哉 S , Tu 涂长春 C , Turina M , Tzanetakis IE , Uchida J , Usugi 宇杉富雄 T , Vaira AM , Vallino M , van den Hoogen B , Varsani A , Vasilakis Νίκος Βασιλάκης N , Verbeek M , von Bargen S , Wada 和田治郎 J , Wahl V , Walker PJ , Wang 王林发 LF , Wang 王国平 G , Wang 王雁翔 Y , Wang 王亚琴 Y , Waqas M , Wèi 魏太云 T , Wen 温少华 S , Whitfield AE , Williams JV , Wolf YI , Wu 吴建祥 J , Xu 徐雷 L , Yanagisawa 栁澤広宣 H , Yang 杨彩霞 C , Yang 杨作坤 Z , Zerbini FM , Zhai 翟立峰 L , Zhang 张永振 YZ , Zhang 张松 S , Zhang 张靖国 J , Zhang 张哲 Z , Zhou 周雪平 X . Arch Virol 2021 166 (12) 3513-3566 |
| Functional Characterization of Circulating Mumps Viruses with Stop Codon Mutations in the Small Hydrophobic Protein.
Stinnett RC , Beck AS , Lopareva EN , McNall RJ , Latner DR , Hickman CJ , Rota PA , Bankamp B . mSphere 2020 5 (6)
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| 2020 taxonomic update for phylum Negarnaviricota (Riboviria: Orthornavirae), including the large orders Bunyavirales and Mononegavirales.
Kuhn JH , Adkins S , Alioto D , Alkhovsky SV , Amarasinghe GK , Anthony SJ , Avšič-Županc T , Ayllón MA , Bahl J , Balkema-Buschmann A , Ballinger MJ , Bartonička T , Basler C , Bavari S , Beer M , Bente DA , Bergeron É , Bird BH , Blair C , Blasdell KR , Bradfute SB , Breyta R , Briese T , Brown PA , Buchholz UJ , Buchmeier MJ , Bukreyev A , Burt F , Buzkan N , Calisher CH , Cao M , Casas I , Chamberlain J , Chandran K , Charrel RN , Chen B , Chiumenti M , Choi IR , Clegg JCS , Crozier I , da Graça JV , Dal Bó E , Dávila AMR , de la Torre JC , de Lamballerie X , de Swart RL , Di Bello PL , Di Paola N , Di Serio F , Dietzgen RG , Digiaro M , Dolja VV , Dolnik O , Drebot MA , Drexler JF , Dürrwald R , Dufkova L , Dundon WG , Duprex WP , Dye JM , Easton AJ , Ebihara H , Elbeaino T , Ergünay K , Fernandes J , Fooks AR , Formenty PBH , Forth LF , Fouchier RAM , Freitas-Astúa J , Gago-Zachert S , Gāo GF , García ML , García-Sastre A , Garrison AR , Gbakima A , Goldstein T , Gonzalez JJ , Griffiths A , Groschup MH , Günther S , Guterres A , Hall RA , Hammond J , Hassan M , Hepojoki J , Hepojoki S , Hetzel U , Hewson R , Hoffmann B , Hongo S , Höper D , Horie M , Hughes HR , Hyndman TH , Jambai A , Jardim R , Jiāng D , Jin Q , Jonson GB , Junglen S , Karadağ S , Keller KE , Klempa B , Klingström J , Kobinger G , Kondō H , Koonin EV , Krupovic M , Kurath G , Kuzmin IV , Laenen L , Lamb RA , Lambert AJ , Langevin SL , Lee B , Lemos ERS , Leroy EM , Li D , Lǐ J , Liang M , Liú W , Liú Y , Lukashevich IS , Maes P , Marciel de Souza W , Marklewitz M , Marshall SH , Martelli GP , Martin RR , Marzano SL , Massart S , McCauley JW , Mielke-Ehret N , Minafra A , Minutolo M , Mirazimi A , Mühlbach HP , Mühlberger E , Naidu R , Natsuaki T , Navarro B , Navarro JA , Netesov SV , Neumann G , Nowotny N , Nunes MRT , Nylund A , Økland AL , Oliveira RC , Palacios G , Pallas V , Pályi B , Papa A , Parrish CR , Pauvolid-Corrêa A , Pawęska JT , Payne S , Pérez DR , Pfaff F , Radoshitzky SR , Rahman AU , Ramos-González PL , Resende RO , Reyes CA , Rima BK , Romanowski V , Robles Luna G , Rota P , Rubbenstroth D , Runstadler JA , Ruzek D , Sabanadzovic S , Salát J , Sall AA , Salvato MS , Sarpkaya K , Sasaya T , Schwemmle M , Shabbir MZ , Shí X , Shí Z , Shirako Y , Simmonds P , Širmarová J , Sironi M , Smither S , Smura T , Song JW , Spann KM , Spengler JR , Stenglein MD , Stone DM , Straková P , Takada A , Tesh RB , Thornburg NJ , Tomonaga K , Tordo N , Towner JS , Turina M , Tzanetakis I , Ulrich RG , Vaira AM , van den Hoogen B , Varsani A , Vasilakis N , Verbeek M , Wahl V , Walker PJ , Wang H , Wang J , Wang X , Wang LF , Wèi T , Wells H , Whitfield AE , Williams JV , Wolf YI , Wú Z , Yang X , Yáng X , Yu X , Yutin N , Zerbini FM , Zhang T , Zhang YZ , Zhou G , Zhou X . Arch Virol 2020 165 (12) 3023-3072 |
| Rapid diagnostic tests to address challenges for global measles surveillance.
Brown DW , Warrener L , Scobie HM , Donadel M , Waku-Kouomou D , Mulders MN , Rota PA . Curr Opin Virol 2020 41 77-84
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| Comparison of Illumina MiSeq and the Ion Torrent PGM and S5 platforms for whole-genome sequencing of picornaviruses and caliciviruses.
Marine RL , Magana LC , Castro CJ , Zhao K , Montmayeur AM , Schmidt A , Diez-Valcarce M , Fan Ng TF , Vinje J , Burns CC , Allan Nix W , Rota PA , Oberste MS . J Virol Methods 2020 280 113865 |
| Genetic Characterization of Mumps Viruses Associated with the Resurgence of Mumps in the United States: 2015-2017.
McNall RJ , Wharton AK , Anderson R , Clemmons N , Lopareva EN , Gonzalez C , Espinosa A , Probert WS , Hacker JK , Liu G , Garfin J , Strain A , Boxrud D , Bryant PW , George KS , Davis T , Griesser RH , Shult P , Bankamp B , Hickman CJ , Wroblewski K , Rota PA . Virus Res 2020 281 197935
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| Qualitative Variation Among Commercial Immunoassays to Detect Measles-Specific IgG.
Latner DR , Sowers SB , Anthony K , Colley H , Badeau C , Coates J , Wong P , Fakile Y , Interiano C , Pannell KB , Leung-Pineda V , Patel MM , Rota PA , Limbago BM , Hickman CJ . J Clin Microbiol 2020 58 (6) |
| Identifying Vaccine-associated Rash Illness Amidst a Large Measles Outbreak: Minnesota, 2017.
Martin KG , Banerjee E , McMahon M , Kenyon C , Strain A , Muscoplat MH , Gastanaduy PA , Rota PA , Mody RK , Ehresmann K . Clin Infect Dis 2020 71 (9) e517-e519 |
| Combining genomics and epidemiology to track mumps virus transmission in the United States.
Wohl S , Metsky HC , Schaffner SF , Piantadosi A , Burns M , Lewnard JA , Chak B , Krasilnikova LA , Siddle KJ , Matranga CB , Bankamp B , Hennigan S , Sabina B , Byrne EH , McNall RJ , Shah RR , Qu J , Park DJ , Gharib S , Fitzgerald S , Barreira P , Fleming S , Lett S , Rota PA , Madoff LC , Yozwiak NL , MacInnis BL , Smole S , Grad YH , Sabeti PC . PLoS Biol 2020 18 (2) e3000611
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| Genetic Characterization of Measles and Rubella Viruses Detected Through Global Measles and Rubella Elimination Surveillance, 2016-2018.
Brown KE , Rota PA , Goodson JL , Williams D , Abernathy E , Takeda M , Mulders MN . MMWR Morb Mortal Wkly Rep 2019 68 (26) 587-591
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| Taxonomy of the order Mononegavirales: update 2019.
Amarasinghe GK , Ayllon MA , Bao Y , Basler CF , Bavari S , Blasdell KR , Briese T , Brown PA , Bukreyev A , Balkema-Buschmann A , Buchholz UJ , Chabi-Jesus C , Chandran K , Chiapponi C , Crozier I , de Swart RL , Dietzgen RG , Dolnik O , Drexler JF , Durrwald R , Dundon WG , Duprex WP , Dye JM , Easton AJ , Fooks AR , Formenty PBH , Fouchier RAM , Freitas-Astua J , Griffiths A , Hewson R , Horie M , Hyndman TH , Jiang D , Kitajima EW , Kobinger GP , Kondo H , Kurath G , Kuzmin IV , Lamb RA , Lavazza A , Lee B , Lelli D , Leroy EM , Li J , Maes P , Marzano SL , Moreno A , Muhlberger E , Netesov SV , Nowotny N , Nylund A , Okland AL , Palacios G , Palyi B , Paweska JT , Payne SL , Prosperi A , Ramos-Gonzalez PL , Rima BK , Rota P , Rubbenstroth D , Shi M , Simmonds P , Smither SJ , Sozzi E , Spann K , Stenglein MD , Stone DM , Takada A , Tesh RB , Tomonaga K , Tordo N , Towner JS , van den Hoogen B , Vasilakis N , Wahl V , Walker PJ , Wang LF , Whitfield AE , Williams JV , Zerbini FM , Zhang T , Zhang YZ , Kuhn JH . Arch Virol 2019 164 (7) 1967-1980 |
| Use of FTA® cards to transport throat swabs and oral fluid samples for molecular detection and genotyping of measles and rubella viruses.
Bankamp B , Sein C , Pukuta Simbu E , Anderson R , Abernathy E , Chen MH , Muyembe Tamfum JJ , Wannemuehler KA , Waku-Kouomou D , Lopareva EN , Icenogle JP , Rota PA , Goodson JL . J Clin Microbiol 2019 57 (5)
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| Strengthening laboratory surveillance of viral pathogens: Experiences and lessons learned building next-generation sequencing capacity in Ghana.
Marine RL , Ntim NAA , Castro CJ , Attiku KO , Pratt D , Duker E , Agbosu E , Ng TFF , Gatei W , Obodai E , Odoom JK , Walker CL , Rota PA , Oberste MS , Ampofo WK , Balajee SA . Int J Infect Dis 2019 81 231-234
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| Differences in antigenic sites and other functional regions between genotype A and G mumps virus surface proteins.
Gouma S , Vermeire T , Van Gucht S , Martens L , Hutse V , Cremer J , Rota PA , Leroux-Roels G , Koopmans M , Binnendijk RV , Vandermarliere E . Sci Rep 2018 8 (1) 13337 |
| Taxonomy of the order Mononegavirales: update 2018.
Amarasinghe GK , Arechiga Ceballos NG , Banyard AC , Basler CF , Bavari S , Bennett AJ , Blasdell KR , Briese T , Bukreyev A , Cai Y , Calisher CH , Campos Lawson C , Chandran K , Chapman CA , Chiu CY , Choi KS , Collins PL , Dietzgen RG , Dolja VV , Dolnik O , Domier LL , Durrwald R , Dye JM , Easton AJ , Ebihara H , Echevarria JE , Fooks AR , Formenty PBH , Fouchier RAM , Freuling CM , Ghedin E , Goldberg TL , Hewson R , Horie M , Hyndman TH , Jiang D , Kityo R , Kobinger GP , Kondo H , Koonin EV , Krupovic M , Kurath G , Lamb RA , Lee B , Leroy EM , Maes P , Maisner A , Marston DA , Mor SK , Muller T , Muhlberger E , Ramirez VMN , Netesov SV , Ng TFF , Nowotny N , Palacios G , Patterson JL , Paweska JT , Payne SL , Prieto K , Rima BK , Rota P , Rubbenstroth D , Schwemmle M , Siddell S , Smither SJ , Song Q , Song T , Stenglein MD , Stone DM , Takada A , Tesh RB , Thomazelli LM , Tomonaga K , Tordo N , Towner JS , Vasilakis N , Vazquez-Moron S , Verdugo C , Volchkov VE , Wahl V , Walker PJ , Wang D , Wang LF , Wellehan JFX , Wiley MR , Whitfield AE , Wolf YI , Ye G , Zhang YZ , Kuhn JH . Arch Virol 2018 163 (8) 2283-2294 |
| Problems of classification in the family Paramyxoviridae.
Rima B , Collins P , Easton A , Fouchier R , Kurath G , Lamb RA , Lee B , Maisner A , Rota P , Wang LF . Arch Virol 2018 163 (5) 1395-1404 |
| Molecular characterisation of measles virus strains among refugees from Central African Republic in Cameroon in 2014.
Ndombo PK , Ndze VN , Mbarga FD , Anderson R , Acho A , Ebua Chia J , Njamnshi AK , Rota PA , Waku-Kouomou D . Epidemiol Infect 2018 146 (3) 1-5 |
| Evolutionary analysis of mumps viruses of genotype F collected in mainland China in 2001-2015.
Cui A , Rivailler P , Zhu Z , Deng X , Hu Y , Wang Y , Li F , Sun Z , He J , Si Y , Tian X , Zhou S , Lei Y , Zheng H , Rota PA , Xu W . Sci Rep 2017 7 (1) 17144 |
| Complete Genome Sequences of Mumps and Measles Virus Isolates from Three States in the United States.
Magana LC , Espinosa A , Marine RL , Ng TFF , Castro CJ , Montmayeur AM , Hacker JK , Scott S , Whyte T , Bankamp B , Oberste MS , Rota PA . Genome Announc 2017 5 (33)
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| Evaluation of TaqMan Array Card (TAC) for the Detection of Central Nervous System Infections in Kenya.
Onyango CO , Loparev V , Lidechi S , Bhullar V , Schmid DS , Radford K , Lo MK , Rota P , Johnson BW , Munoz J , Oneko M , Burton D , Black CM , Neatherlin J , Montgomery JM , Fields B . J Clin Microbiol 2017 55 (7) 2035-2044 |
| Taxonomy of the order Mononegavirales: update 2017.
Amarasinghe GK , Bao Y , Basler CF , Bavari S , Beer M , Bejerman N , Blasdell KR , Bochnowski A , Briese T , Bukreyev A , Calisher CH , Chandran K , Collins PL , Dietzgen RG , Dolnik O , Durrwald R , Dye JM , Easton AJ , Ebihara H , Fang Q , Formenty P , Fouchier RA , Ghedin E , Harding RM , Hewson R , Higgins CM , Hong J , Horie M , James AP , Jiang D , Kobinger GP , Kondo H , Kurath G , Lamb RA , Lee B , Leroy EM , Li M , Maisner A , Muhlberger E , Netesov SV , Nowotny N , Patterson JL , Payne SL , Paweska JT , Pearson MN , Randall RE , Revill PA , Rima BK , Rota P , Rubbenstroth D , Schwemmle M , Smither SJ , Song Q , Stone DM , Takada A , Terregino C , Tesh RB , Tomonaga K , Tordo N , Towner JS , Vasilakis N , Volchkov VE , Wahl-Jensen V , Walker PJ , Wang B , Wang D , Wang F , Wang LF , Werren JH , Whitfield AE , Yan Z , Ye G , Kuhn JH . Arch Virol 2017 162 (8) 2493-2504 |
| Rapid identification of measles virus vaccine genotypes by real time PCR.
Roy F , Mendoza L , Hiebert J , McNall RJ , Bankamp B , Connolly S , Ludde A , Friedrich N , Mankertz A , Rota PA , Severini A . J Clin Microbiol 2016 55 (3) 735-743 |
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