CDC-Authored Genomics and Precision Health Publications Database
Last data update: Aug 15, 2025. (Total: 6773 publications)
| Query Trace: Reproducibility[original query] |
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| Performance of novel digital real-time PCR for detection of SARS-CoV-2, respiratory syncytial viruses, and influenza viruses in Ghana
Owusu M , Nkrumah B , Acheampong G , Opoku Afriyie S , Addae EK , Larbi R , Ansah RO , Kubio C , Saeed F , Ayisi-Boateng NK , Darko E , Amonoo-Neizer J , Owusu-Ansah AG , Ayensu F , Brenya PK , Bannor V , Angra P , Barradas DT . Microbiol Spectr 2025 e0321924 |
| Interlaboratory study to assess precision and reproducibility of the meningococcal antigen surface expression (MEASURE) assay to quantify factor H binding protein expression at the surface of meningococcal serogroup B strains
Loschko J , Liberator P , Findlow J , Yip J , Tan C , Garcia K , Murillo M , Gorantla Y , Moss KM , Maniatis P , Clark SA , Borrow R . Diagn Microbiol Infect Dis 2025 113 (2) 116920 |
| PHA4GE quality control contextual data tags: standardized annotations for sharing public health sequence datasets with known quality issues to facilitate testing and training
Griffiths EJ , Mendes I , Maguire F , Guthrie JL , Wee BA , Schmedes S , Holt K , Yadav C , Cameron R , Barclay C , Dooley D , MacCannell D , Chindelevitch L , Karsch-Mizrachi I , Waheed Z , Katz L , Petit Iii R , Dave M , Oluniyi P , Nasar MI , Raphenya A , Hsiao WWL , Timme RE . Microb Genom 2024 10 (6) 
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| Can incorporating molecular testing improve the accuracy of newborn screening for congenital adrenal hyperplasia?
Sarafoglou K , Gaviglio A , Wolf C , Lorentz CP , Lteif A , Kyllo J , Radloff G , Detwiler Z , Cuthbert CD , Hodges JS , Grosse SD , Greene CN , Cordovado S . J Clin Endocrinol Metab 2024 |
| Validation of a clinical assay for botulinum neurotoxins through mass spectrometric detection
Hoyt KM , Barr JR , Hopkins AO , Dykes JK , Lúquez C , Kalb SR . J Clin Microbiol 2024 e0162923
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| A bioinformatics pipeline for a tick pathogen surveillance multiplex amplicon sequencing assay
Osikowicz LM , Hojgaard A , Maes S , Eisen RJ , Stenglein MD . Ticks Tick Borne Dis 2023 14 (5) 102207
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| A prospective nested case-control study of serum concentrations of per- and polyfluoroalkyl substances and aggressive prostate cancer risk.
Rhee J , Barry KH , Huang WY , Sampson JN , Hofmann JN , Silverman DT , Calafat AM , Botelho JC , Kato K , Purdue MP , Berndt SI . Environ Res 2023 228 115718 |
| Improved diagnostic and multiplex RT-qPCR for detecting rubella viral RNA.
Chen MH , Abernathy E , Icenogle JP , Perelygina LM . J Virol Methods 2022 306 114555
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| A Partially Multiplexed HIV Drug Resistance (HIVDR) Assay for Monitoring HIVDR Mutations of the Protease, Reverse-Transcriptase (PRRT), and Integrase (INT).
DeVos J , McCarthy K , Sewe V , Akinyi G , Junghae M , Opollo V , Nouhin J , Shafer R , Zeh C , Ramos A , Alexander H , Chang J . Microbiol Spectr 2022 10 (3) e0177621
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| Reference materials for MS-based untargeted metabolomics and lipidomics: a review by the metabolomics quality assurance and quality control consortium (mQACC).
Lippa KA , Aristizabal-Henao JJ , Beger RD , Bowden JA , Broeckling C , Beecher C , Clay Davis W , Dunn WB , Flores R , Goodacre R , Gouveia GJ , Harms AC , Hartung T , Jones CM , Lewis MR , Ntai I , Percy AJ , Raftery D , Schock TB , Sun J , Theodoridis G , Tayyari F , Torta F , Ulmer CZ , Wilson I , Ubhi BK . Metabolomics 2022 18 (4) 24 |
| Software testing in microbial bioinformatics: a call to action.
van der Putten BCL , Mendes CI , Talbot BM , de Korne-Elenbaas J , Mamede R , Vila-Cerqueira P , Coelho LP , Gulvik CA , Katz LS , The Asm Ngs Hackathon Participants . Microb Genom 2022 8 (3) |
| Future-proofing and maximizing the utility of metadata: The PHA4GE SARS-CoV-2 contextual data specification package.
Griffiths EJ , Timme RE , Mendes CI , Page AJ , Alikhan NF , Fornika D , Maguire F , Campos J , Park D , Olawoye IB , Oluniyi PE , Anderson D , Christoffels A , da Silva AG , Cameron R , Dooley D , Katz LS , Black A , Karsch-Mizrachi I , Barrett T , Johnston A , Connor TR , Nicholls SM , Witney AA , Tyson GH , Tausch SH , Raphenya AR , Alcock B , Aanensen DM , Hodcroft E , Hsiao WWL , Vasconcelos ATR , MacCannell DR . Gigascience 2022 11
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| Bedaquiline Drug Resistance Emergence Assessment in Multidrug-Resistant Tuberculosis (MDR-TB): a 5-Year Prospective In Vitro Surveillance Study of Bedaquiline and Other Second-Line Drug Susceptibility Testing in MDR-TB Isolates.
Kaniga K , Hasan R , Jou R , Vasiliauskienė E , Chuchottaworn C , Ismail N , Metchock B , Miliauskas S , Viet Nhung N , Rodrigues C , Shin S , Simsek H , Smithtikarn S , Ngoc ALT , Boonyasopun J , Kazi M , Kim S , Kamolwat P , Musteikiene G , Sacopon CA , Tahseen S , Vasiliauskaitė L , Wu MH , Vally Omar S . J Clin Microbiol 2021 60 (1) Jcm0291920 |
| Recommended reporting items for epidemic forecasting and prediction research: The EPIFORGE 2020 guidelines.
Pollett S , Johansson MA , Reich NG , Brett-Major D , Del Valle SY , Venkatramanan S , Lowe R , Porco T , Berry IM , Deshpande A , Kraemer MUG , Blazes DL , Pan-Ngum W , Vespigiani A , Mate SE , Silal SP , Kandula S , Sippy R , Quandelacy TM , Morgan JJ , Ball J , Morton LC , Althouse BM , Pavlin J , van Panhuis W , Riley S , Biggerstaff M , Viboud C , Brady O , Rivers C . PLoS Med 2021 18 (10) e1003793
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| Use of real-time PCR as an alternative to conventional genotyping methods for the laboratory detection of lymphogranuloma venereum (LGV).
Woodson EN , Katz SS , Mosley SS , Danavall DC , Bowden KE , Chi KH , Raphael BH . Diagn Microbiol Infect Dis 2021 101 (4) 115532
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| Performance of a fully-automated system on a WHO malaria microscopy evaluation slide set.
Horning MP , Delahunt CB , Bachman CM , Luchavez J , Luna C , Hu L , Jaiswal MS , Thompson CM , Kulhare S , Janko S , Wilson BK , Ostbye T , Mehanian M , Gebrehiwot R , Yun G , Bell D , Proux S , Carter JY , Oyibo W , Gamboa D , Dhorda M , Vongpromek R , Chiodini PL , Ogutu B , Long EG , Tun K , Burkot TR , Lilley K , Mehanian C . Malar J 2021 20 (1) 110 |
| NanoString Technology for Human Papillomavirus Typing.
Rajeevan MS , Patel S , Li T , Unger ER . Viruses 2021 13 (2)
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| WHO malaria nucleic acid amplification test external quality assessment scheme: results of distribution programmes one to three.
Cunningham JA , Thomson RM , Murphy SC , de la Paz Ade M , Ding XC , Incardona S , Legrand E , Lucchi NW , Menard D , Nsobya SL , Saez AC , Chiodini PL , Shrivastava J . Malar J 2020 19 (1) 129
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| An Isothermal, Multiplex Amplification Assay for Detection and Genotyping of Human Papillomaviruses in Formalin-Fixed, Paraffin-Embedded Tissues.
Tang YW , Lozano L , Chen X , Querec TD , Katabi N , Moreno-Docon A , Wang H , Fix D , De Brot L , McMillen TA , Yoon JY , Torroba A , Wang Y , Unger ER , Park KJ . J Mol Diagn 2020 22 (3) 419-428 |
| A systematic review and evaluation of Zika virus forecasting and prediction research during a public health emergency of international concern.
Kobres PY , Chretien JP , Johansson MA , Morgan JJ , Whung PY , Mukundan H , Del Valle SY , Forshey BM , Quandelacy TM , Biggerstaff M , Viboud C , Pollett S . PLoS Negl Trop Dis 2019 13 (10) e0007451
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| Analytical Evaluation of the Microarray-Based FluChip-8G Influenza A+B Assay.
Taylor AW , Dawson ED , Blair RH , Johnson JEJr , Slinskey AH , Smolak AW , Toth E , Liikanen K , Stoughton RS , Smith C , Talbot S , Rowlen KL . J Virol Methods 2019 273 113686
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| Duplex Real-Time RT-PCR Assay for Detection and Subgroup-Specific Identification of Human Respiratory Syncytial Virus.
Wang L , Piedra P , Avadhanula V , Durigon EL , Machablishvili A , Lopez MR , Thornburg N , Peret TCT . J Virol Methods 2019 271 113676
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| Universal human papillomavirus typing by whole genome sequencing following target enrichment: evaluation of assay reproducibility and limit of detection.
Li T , Unger ER , Rajeevan MS . BMC Genomics 2019 20 (1) 231
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| Multi-site evaluation of the LN34 pan-lyssavirus real-time RT-PCR assay for post-mortem rabies diagnostics.
Gigante CM , Dettinger L , Powell JW , Seiders M , Condori REC , Griesser R , Okogi K , Carlos M , Pesko K , Breckenridge M , Simon EMM , Chu Myjv , Davis AD , Brunt SJ , Orciari L , Yager P , Carson WC , Hartloge C , Saliki JT , Sanchez S , Deldari M , Hsieh K , Wadhwa A , Wilkins K , Peredo VY , Rabideau P , Gruhn N , Cadet R , Isloor S , Nath SS , Joseph T , Gao J , Wallace R , Reynolds M , Olson VA , Li Y . PLoS One 2018 13 (5) e0197074
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| GHOST: global hepatitis outbreak and surveillance technology.
Longmire AG , Sims S , Rytsareva I , Campo DS , Skums P , Dimitrova Z , Ramachandran S , Medrzycki M , Thai H , Ganova-Raeva L , Lin Y , Punkova LT , Sue A , Mirabito M , Wang S , Tracy R , Bolet V , Sukalac T , Lynberg C , Khudyakov Y . BMC Genomics 2017 18 916 |
| Interlaboratory validation of an improved method for detection of Cyclospora cayetanensis in produce using a real-time PCR assay.
Murphy HR , Cinar HN , Gopinath G , Noe KE , Chatman LD , Miranda NE , Wetherington JH , Neal-McKinney J , Pires GS , Sachs E , Stanya KJ , Johnson CL , Nascimento FS , Santin M , Molokin A , Samadpour M , Janagama H , Kahler A , Miller C , da Silva AJ . Food Microbiol 2018 69 170-178 |
| Development of a qualitative assay for screening of Bordetella pertussis isolates for pertussis toxin production.
Gates I , DuVall M , Ju H , Tondella ML , Pawloski L . PLoS One 2017 12 (4) e0175326 |
| Performance of Celera RUO integrase resistance assay across multiple HIV-1 subtypes
Wallis CL , Viana RV , Saravanan S , de Jesus CS , Zeh C , Halvas EK , Mellors JW . J Virol Methods 2016 241 41-45 |
| Single-use, electricity-free amplification device for detection of HIV-1
Curtis KA , Rudolph DL , Morrison D , Guelig D , Diesburg S , McAdams D , Burton RA , LaBarre P , Owen M . J Virol Methods 2016 237 132-137 |
| An Optimized Method for Quantification of Pathogenic Leptospira in Environmental Water Samples.
Riediger IN , Hoffmaster AR , Casanovas-Massana A , Biondo AW , Ko AI , Stoddard RA . PLoS One 2016 11 (8) e0160523 |
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