CDC-Authored Genomics and Precision Health Publications Database

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Last data update: Mar 21, 2025. (Total: 6600 publications)

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Records 1-30 (of 35 Records)

Query Trace: Rasheed M[original query]
Sentinel Surveillance reveals phylogenetic diversity and detection of linear plasmids harboring vanA and optrA among enterococci collected in the United States Kent AG , Spicer LM , Campbell D , Breaker E , McAllister GA , Ewing TO , Longo C , Balbuena R , Burroughs M , Burgin A , Padilla J , Johnson JK , Halpin AL , McKay SL , Rasheed JK , Elkins CA , Karlsson M , Lutgring JD , Gargis AS . Antimicrob Agents Chemother 2024 e0059124
Complete genome sequences of Clostridioides difficile surveillance isolates representing the top 10 ribotypes from the Emerging Infections Program, United States, 2016 Adamczyk M , Vlachos N , Breaker E , Orazi G , Paulick AL , Rowe LA , McAllister G , Machado MJ , Korhonen L , Guh AY , Rasheed JK , Karlsson M , McKay SL , Lutgring JD , Gargis AS . Microbiol Resour Announc 2024 e0112823
Immune response kinetics to SARS-CoV-2 infection and COVID-19 vaccination among nursing home residents-Georgia, October 2020-July 2022 Chisty ZA , Li DD , Haile M , Houston H , DaSilva J , Overton R , Schuh AJ , Haynie J , Clemente J , Branch AG , Arons MM , Tsang CA , Pellegrini GJ Jr , Bugrysheva J , Ilutsik J , Mohelsky R , Comer P , Hundia SB , Oh H , Stuckey MJ , Bohannon CD , Rasheed MAU , Epperson M , Thornburg NJ , McDonald LC , Brown AC , Kutty PK . PLoS One 2024 19 (4) e0301367
Differentiation of hypervirulent and classical Klebsiella pneumoniae with acquired drug resistance Russo TA , Alvarado CL , Davies CJ , Drayer ZJ , Carlino-MacDonald U , Hutson A , Luo TL , Martin MJ , Corey BW , Moser KA , Rasheed JK , Halpin AL , McGann PT , Lebreton F . mBio 2024 e0286723
Comparison of carbapenem-susceptible and carbapenem-resistant Enterobacterales at nine sites in the USA, 2013-2016: a resource for antimicrobial resistance investigators Lutgring JD , Kent AG , Bowers JR , Jasso-Selles DE , Albrecht V , Stevens VA , Pfeiffer A , Barnes R , Engelthaler DM , Johnson JK , Gargis AS , Rasheed JK , Limbago BM , Elkins CA , Karlsson M , Halpin AL . Microb Genom 2023 9 (11)
Performance evaluation of the Streck ARM-D® β-Lactamase Kit for molecular detection of acquired β-lactamase genes Yoo BB , Yamamoto N , Quintero JI , Machado MJ , Sabour S , Blosser S , Karlsson M , Rasheed JK , Brown AC . J Glob Antimicrob Resist 2024
Reference Susceptibility Testing and Genomic Surveillance of Clostridioides difficile, United States, 2012-17. Gargis AS , Karlsson M , Paulick AL , Anderson KF , Adamczyk M , Vlachos N , Kent AG , McAllister GA , McKay SL , Halpin AL , Albrecht V , Campbell D , Korhonen L , Elkins CA , Rasheed JK , Guh AY , McDonald LC , Lutgring JD . Clin Infect Dis 2022 76 (5) 890-896
Evaluation of MALDI Biotyper Mycobacteria Library for Identification of Nontuberculous Mycobacteria. Toney NC , Zhu W , Jensen B , Gartin J , Anderson K , Lonsway D , Karlsson M , Rasheed JK . J Clin Microbiol 2022 60 (9) e0021722
Molecular Epidemiology of Carbapenem-Resistant Acinetobacter baumannii in the United States, 2013-2017. McKay SL , Vlachos N , Daniels JB , Albrecht VS , Stevens VA , Rasheed JK , Johnson JK , Lutgring JD , Sjölund-Karlsson M , Halpin AL . Microb Drug Resist 2022 28 (6) 645-653
Sentinel Surveillance Reveals Emerging Daptomycin-Resistant ST736 Enterococcus faecium and Multiple Mechanisms of Linezolid Resistance in Enterococci in the United States. Gargis AS , Spicer LM , Kent AG , Zhu W , Campbell D , McAllister G , Ewing TO , Albrecht V , Stevens VA , Sheth M , Padilla J , Batra D , Johnson JK , Halpin AL , Rasheed JK , Elkins CA , Karlsson M , Lutgring JD . Front Microbiol 2021 12 807398
Epidemiology of extended-spectrum β-lactamase-producing Enterobacterales in five US sites participating in the Emerging Infections Program, 2017. Duffy N , Karlsson M , Reses HE , Campbell D , Daniels J , Stanton RA , Janelle SJ , Schutz K , Bamberg W , Rebolledo PA , Bower C , Blakney R , Jacob JT , Phipps EC , Flores KG , Dumyati G , Kopin H , Tsay R , Kainer MA , Muleta D , Byrd-Warner B , Grass JE , Lutgring JD , Rasheed JK , Elkins CA , Magill SS , See I . Infect Control Hosp Epidemiol 2022 43 (11) 1-9
Molecular Characterization of Carbapenem-Resistant Enterobacterales Collected in the United States. Karlsson M , Lutgring JD , Ansari U , Lawsin A , Albrecht V , McAllister G , Daniels J , Lonsway D , McKay S , Beldavs Z , Bower C , Dumyati G , Gross A , Jacob J , Janelle S , Kainer MA , Lynfield R , Phipps EC , Schutz K , Wilson L , Witwer ML , Bulens SN , Walters MS , Duffy N , Kallen AJ , Elkins CA , Rasheed JK . Microb Drug Resist 2022 28 (4) 389-397
Mapping SARS-CoV-2 Antibody Epitopes in COVID-19 Patients with a Multi-Coronavirus Protein Microarray. Camerini D , Randall AZ , Trappl-Kimmons K , Oberai A , Hung C , Edgar J , Shandling A , Huynh V , Teng AA , Hermanson G , Pablo JV , Stumpf MM , Lester SN , Harcourt J , Tamin A , Rasheed M , Thornburg NJ , Satheshkumar PS , Liang X , Kennedy RB , Yee A , Townsend M , Campo JJ . Microbiol Spectr 2021 9 (2) e0141621
Detection and Characterization of Targeted Carbapenem-Resistant Healthcare-Associated Threats: Findings from The Antibiotic Resistance Laboratory Network, 2017-2019. Sabour S , Huang JY , Bhatnagar A , Gilbert SE , Karlsson M , Lonsway D , Lutgring JD , Rasheed JK , Halpin AL , Stanton RA , Gumbis S , Elkins CA , Brown AC . Antimicrob Agents Chemother 2021 65 (12) Aac0110521
Characterization of Clostridioides difficile Isolates Available through the CDC & FDA Antibiotic Resistance Isolate Bank. Paulick A , Adamczyk M , Anderson K , Vlachos N , Machado MJ , McAllister G , Korhonen L , Guh AY , Halpin AL , Rasheed JK , Karlsson M , Lutgring JD , Gargis AS . Microbiol Resour Announc 2021 10 (1)
Assessing the in vitro impact of ceftazidime on aztreonam/avibactam susceptibility testing for highly resistant MBL-producing Enterobacterales. Bhatnagar A , Ransom EM , Machado MJ , Boyd S , Reese N , Anderson K , Lonsway D , Elkins CA , Rasheed JK , Patel JB , Karlsson M , Brown AC , Lutgring JD . J Antimicrob Chemother 2020 76 (4) 979-983
Performance of Oropharyngeal Swab Testing Compared With Nasopharyngeal Swab Testing for Diagnosis of Coronavirus Disease 2019-United States, January 2020-February 2020. Patel MR , Carroll D , Ussery E , Whitham H , Elkins CA , Noble-Wang J , Rasheed JK , Lu X , Lindstrom S , Bowen V , Waller J , Armstrong G , Gerber S , Brooks JT . Clin Infect Dis 2020 72 (3) 403-410
Multispecies Outbreak of Verona Integron-Encoded Metallo-ß-Lactamase-Producing Multidrugresistant Bacteria Driven by a Promiscuous Incompatibility Group A/C2. de Man TJB , Yaffee AQ , Zhu W , Batra D , Alyanak E , Rowe LA , McAllister G , Moulton-Meissner H , Boyd S , Flinchum A , Slayton RB , Hancock S , Spalding Walters M , Laufer Halpin A , Rasheed JK , Noble-Wang J , Kallen AJ , Limbago BM . Clin Infect Dis 2020 72 (3) 414-420
Development and Validation of a Clinical Laboratory Improvement Amendments-Compliant Multiplex Real-Time PCR Assay for Detection of mcr Genes. Daniels JB , Campbell D , Boyd S , Ansari U , Lutgring J , Rasheed JK , Halpin AL , Sjolund-Karlsson M . Microb Drug Resist 2019 25 (7) 991-996
Conjugal Transfer, Whole Genome Sequencing, and Plasmid Analysis of Four mcr-1 -bearing Isolates from U.S. Patients. Zhu W , Lawsin A , Lindsey RL , Batra D , Knipe K , Yoo BB , Perry KA , Rowe LA , Lonsway D , Waters MS , Rasheed JK , Halpin AL . Antimicrob Agents Chemother 2019 63 (4)
Multihospital Outbreak of a Middle East Respiratory Syndrome Coronavirus Deletion Variant, Jordan: A Molecular, Serologic, and Epidemiologic Investigation. Payne DC , Biggs HM , Al-Abdallat MM , Alqasrawi S , Lu X , Abedi GR , Haddadin A , Iblan I , Alsanouri T , Al Nsour M , Sheikh Ali S , Rha B , Trivedi SU , Rasheed MAU , Tamin A , Lamers MM , Haagmans BL , Erdman DD , Thornburg NJ , Gerber SI . Open Forum Infect Dis 2018 5 (5) ofy095
Direct Detection of Carbapenem-Resistant Organisms from Environmental Samples Using the GeneXpert Molecular Diagnostic System. Perry KA , Daniels JB , Reddy SC , Kallen AJ , Halpin AL , Rasheed JK , Noble-Wang JA . mSphere 2018 3 (4)
Improved Subtyping of Staphylococcus aureus Clonal Complex 8 Strains Based on Whole-Genome Phylogenetic Analysis. Bowers JR , Driebe EM , Albrecht V , McDougal LK , Granade M , Roe CC , Lemmer D , Rasheed JK , Engelthaler DM , Keim P , Limbago BM . mSphere 2018 3 (3)
Phenotypic and Genotypic Characterization of Enterobacteriaceae Producing Oxacillinase-48-Like Carbapenemases, United States. Lutgring JD , Zhu W , de Man TJB , Avillan JJ , Anderson KF , Lonsway DR , Rowe LA , Batra D , Rasheed JK , Limbago BM . Emerg Infect Dis 2018 24 (4) 700-709
Genomic Analysis of a Pan-Resistant Isolate of Klebsiella pneumoniae , United States 2016. de Man TJB , Lutgring JD , Lonsway DR , Anderson KF , Kiehlbauch JA , Chen L , Walters MS , Sjolund-Karlsson M , Rasheed JK , Kallen A , Halpin AL . mBio 2018 9 (2)
Genomic Analysis of the Emergence and Rapid Global Dissemination of the Clonal Group 258 Klebsiella pneumoniae Pandemic. Bowers JR , Kitchel B , Driebe EM , MacCannell DR , Roe C , Lemmer D , de Man T , Rasheed JK , Engelthaler DM , Keim P , Limbago BM . PLoS One 2015 10 (7) e0133727
Draft Genome Sequence of a New Delhi Metallo-ß-Lactamase-5 (NDM-5)-Producing Multidrug-Resistant Escherichia coli Isolate. de Man TJ , Perry KA , Avillan JJ , Rasheed JK , Limbago BM . Genome Announc 2015 3 (2)
Activation of the RIG-I pathway during influenza vaccination enhances the germinal center reaction, promotes T follicular helper cell induction, and provides a dose-sparing effect and protective immunity. Kulkarni RR , Rasheed MA , Bhaumik SK , Ranjan P , Cao W , Davis C , Marisetti K , Thomas S , Gangappa S , Sambhara S , Kaja MK . J Virol 2014 88 (24) 13990-4001
Transmission of methicillin-resistant Staphylococcus aureus infection through solid organ transplantation: confirmation via whole genome sequencing. Wendt JM , Kaul D , Limbago BM , Ramesh M , Cohle S , Denison AM , Driebe EM , Rasheed JK , Zaki SR , Blau DM , Paddock CD , McDougal LK , Engelthaler DM , Keim PS , Roe CC , Akselrod H , Kuehnert MJ , Basavaraju SV . Am J Transplant 2014 14 (11) 2633-9
Carbapenem-resistant Klebsiella pneumoniae producing New Delhi metallo-ß-lactamase at an acute care hospital, Colorado, 2012. Epson EE , Pisney LM , Wendt JM , Maccannell DR , Janelle SJ , Kitchel B , Rasheed JK , Limbago BM , Gould CV , Kallen AJ , Barron MA , Bamberg WM . Infect Control Hosp Epidemiol 2014 35 (4) 390-7