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CDC-Authored Genomics and Precision Health Publications Database|Home|PHGKB

CDC-Authored Genomics and Precision Health Publications Database


Last data update: Dec 11, 2023. (Total: 4787 publications since 2011)
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Records 1-28 (of 28 Records)
Query Trace: Peng Y[original query]
Genome-based prediction of cross-protective, HLA-DR-presented epitopes as putative vaccine antigens for multiple Bordetella species
Natrajan MS , Hall JM , Weigand MR , Peng Y , Williams MM , Momin M , Damron FH , Dubey P , Tondella ML , Pawloski LC .
Microbiol Spectr 2023 e0352723
Genomic characterization of cocirculating Corynebacterium diphtheriae and non-diphtheritic Corynebacterium species among forcibly displaced Myanmar nationals, 2017-2019
Xiaoli L , Peng Y , Williams MM , Lawrence M , Cassiday PK , Aneke JS , Pawloski LC , Shil SR , Rashid MO , Bhowmik P , Weil LM , Acosta AM , Shirin T , Habib ZH , Tondella ML , Weigand MR .
Microb Genom 2023 9 (9) type
Distinct In Vitro and In Vivo Neutralization Profiles of Monoclonal Antibodies Elicited by the Receptor Binding Domain of the Ancestral SARS-CoV-2.
Kwon HJ , Zhang J , Kosikova M , Tang W , Ortega-Rodriguez U , Peng H , Meseda CA , Pedro CL , Schmeisser F , Lu J , Kang I , Zhou B , Davis CT , Wentworth DE , Chen WH , Shriver MC , Barnes RS , Pasetti MF , Weir JP , Chen B , Xie H .
J Med Virol 2023
Complete Genome Sequences of Four Macrolide-Resistant Nondiphtheritic Corynebacterium Isolates.
Xiaoli L , Peng Y , Williams MM , Cassiday PK , Nobles S , Unoarumhi Y , Weil LM , Shirin T , Habib ZH , Tondella ML , Weigand MR .
Microbiol Resour Announc 2022 11 (9) e0049222 type
An early warning system for emerging SARS-CoV-2 variants.
Subissi Lorenzo, von Gottberg Anne, Thukral Lipi, Worp Nathalie, Oude Munnink Bas B, Rathore Surabhi, Abu-Raddad Laith J, Aguilera Ximena, Alm Erik, Archer Brett N, Attar Cohen Homa, Barakat Amal, Barclay Wendy S, Bhiman Jinal N, Caly Leon, Chand Meera, Chen Mark, Cullinane Ann, de Oliveira Tulio, Drosten Christian, Druce Julian, Effler Paul, El Masry Ihab, Faye Adama, Gaseitsiwe Simani, Ghedin Elodie, Grant Rebecca, Haagmans Bart L, Herring Belinda L, Iyer Shilpa S, Kassamali Zyleen, Kakkar Manish, Kondor Rebecca J, Leite Juliana A, Leo Yee-Sin, Leung Gabriel M, Marklewitz Marco, Moyo Sikhulile, Mendez-Rico Jairo, Melhem Nada M, Munster Vincent, Nahapetyan Karen, Oh Djin-Ye, Pavlin Boris I, Peacock Thomas P, Peiris Malik, Peng Zhibin, Poon Leo L M, Rambaut Andrew, Sacks Jilian, Shen Yinzhong, Siqueira Marilda M, Tessema Sofonias K, Volz Erik M, Thiel Volker, van der Werf Sylvie, Briand Sylvie, Perkins Mark D, Van Kerkhove Maria D, Koopmans Marion P G, Agrawal Anurag. Nature medicine 2022 .
Nature medicine 2022
Towards comprehensive understanding of bacterial genetic diversity: large-scale amplifications in Bordetella pertussis and Mycobacterium tuberculosis.
Abrahams JS , Weigand MR , Ring N , MacArthur I , Etty J , Peng S , Williams MM , Bready B , Catalano AP , Davis JR , Kaiser MD , Oliver JS , Sage JM , Bagby S , Tondella ML , Gorringe AR , Preston A .
Microb Genom 2022 8 (2)
Novel Candidate Genes Differentially Expressed in Glyphosate-Treated Horseweed (Conyza canadensis).
Yang Y , Gardner C , Gupta P , Peng Y , Piasecki C , Millwood RJ , Ahn TH , Stewart CN Jr .
Genes (Basel) 2021 12 (10)
Diagnostic Utility of Serum and Urinary Metabolite Analysis in Patients with Interstitial Cystitis/Painful Bladder Syndrome.
Kim J , DeHoedt A , Wiggins E , Haywood K , Jin P , Greenwood B , Narain NR , Tolstikov V , Bussberg V , Barbour KE , Kiebish MA , Freedland S , Anger JT .
Urology 2021 157 85-92
Iterative guided machine learning-assisted systematic literature reviews: a diabetes case study.
Zimmerman J , Soler RE , Lavinder J , Murphy S , Atkins C , Hulbert L , Lusk R , Ng BP .
Syst Rev 2021 10 (1) 97
Genomic surveillance and improved molecular typing of Bordetella pertussis using wgMLST
Weigand MR , Peng Y , Pouseele H , Kania D , Bowden KE , Williams MM , Tondella ML .
J Clin Microbiol 2021 59 (5) type
Genomic epidemiology of nontoxigenic Corynebacterium diphtheriae from King County, Washington State, USA between July 2018 and May 2019.
Xiaoli L , Benoliel E , Peng Y , Aneke J , Cassiday PK , Kay M , McKeirnan S , Duchin JS , Kawakami V , Lindquist S , Acosta AM , DeBolt C , Tondella ML , Weigand MR .
Microb Genom 2020 6 (12) type
Detection and characterization of diphtheria toxin gene-bearing Corynebacterium species through a new real-time PCR assay.
Williams MM , Waller JL , Aneke JS , Weigand MR , Diaz MH , Bowden KE , Simon AK , Peng Y , Xiaoli L , Cassiday PK , Winchell J , Tondella ML .
J Clin Microbiol 2020 58 (10) type
Conserved Patterns of Symmetric Inversion in the Genome Evolution of Bordetella Respiratory Pathogens.
Weigand MR , Peng Y , Batra D , Burroughs M , Davis JK , Knipe K , Loparev VN , Johnson T , Juieng P , Rowe LA , Sheth M , Tang K , Unoarumhi Y , Williams MM , Tondella ML .
mSystems 2019 4 (6) type
Genomic Survey of Bordetella pertussis Diversity, United States, 2000-2013.
Weigand MR , Williams MM , Peng Y , Kania D , Pawloski LC , Tondella ML .
Emerg Infect Dis 2019 25 (4) 780-783 type
Screening and genomic characterization of filamentous hemagglutinin-deficient Bordetella pertussis.
Weigand MR , Pawloski LC , Peng Y , Ju H , Burroughs M , Cassiday PK , Davis JK , DuVall M , Johnson T , Juieng P , Knipe K , Loparev VN , Mathis MH , Rowe LA , Sheth M , Williams MM , Tondella ML .
Infect Immun 2018 86 (4) type
Complete Genome Sequences of Bordetella pertussis Isolates with Novel Pertactin-Deficient Deletions.
Weigand Michael R, Peng Yanhui, Cassiday Pamela K, Loparev Vladimir N, Johnson Taccara, Juieng Phalasy, Nazarian Elizabeth J, Weening Keeley, Tondella M Lucia, Williams Margaret M.Genome announcements 2017 Sep (37) .
Genome announcements 2017 Sep (37)
A case control study on family history as a risk factor for herpes zoster and associated outcomes, Beijing, China.
Suo Luodan, Lu Li, Li Juan, Sun Mu, Wang Haihong, Peng Xinhui, Yang Fan, Pang Xinghuo, Marin Mona, Wang Chengbin. BMC infectious diseases 2017 May 17(1) 334 .
BMC infectious diseases 2017 May 17(1) 334
The History of Bordetella pertussis Genome Evolution Includes Structural Rearrangement.
Weigand Michael R, Peng Yanhui, Loparev Vladimir, Batra Dhwani, Bowden Katherine E, Burroughs Mark, Cassiday Pamela K, Davis Jamie K, Johnson Taccara, Juieng Phalasy, Knipe Kristen, Mathis Marsenia H, Pruitt Andrea M, Rowe Lori, Sheth Mili, Tondella M Lucia, Williams Margaret M.Journal of bacteriology 2017 Feb .
Journal of bacteriology 2017 Feb
Laboratory Investigation of <i>Salmonella enterica</i> serovar Poona Outbreak in California: Comparison of Pulsed-Field Gel Electrophoresis (PFGE) and Whole Genome Sequencing (WGS) Results.
Kozyreva Varvara K, Crandall John, Sabol Ashley, Poe Alyssa, Zhang Peng, Concepción-Acevedo Jeniffer, Schroeder Morgan N, Wagner Darlene, Higa Jeffrey, Trees Eija, Chaturvedi Vishnu.PLoS currents 2016 Nov .
PLoS currents 2016 Nov
Complete Genome Sequences of Four Bordetella pertussis Vaccine Reference Strains from Serum Institute of India.
Weigand Michael R, Peng Yanhui, Loparev Vladimir, Johnson Taccara, Juieng Phalasy, Gairola Sunil, Kumar Rakesh, Shaligram Umesh, Gowrishankar Ramnath, Moura Hercules, Rees Jon, Schieltz David M, Williamson Yulanda, Woolfitt Adrian, Barr John, Tondella M Lucia, Williams Margaret M.Genome announcements 2016 Dec (6) .
Genome announcements 2016 Dec (6)
Complete Genome Sequences of Four Different Bordetella sp. Isolates Causing Human Respiratory Infections.
Weigand Michael R, Peng Yanhui, Loparev Vladimir, Batra Dhwani, Bowden Katherine E, Cassiday Pamela K, Davis Jamie K, Johnson Taccara, Juieng Phalasy, Miner Christine E, Rowe Lori, Sheth Mili, Tondella M Lucia, Williams Margaret M.Genome announcements 2016 Oct (5) .
Genome announcements 2016 Oct (5)
Complete Genome Sequences of Bordetella pertussis Vaccine Reference Strains 134 and 10536.
Weigand Michael R, Peng Yanhui, Loparev Vladimir, Batra Dhwani, Burroughs Mark, Johnson Taccara, Juieng Phalasy, Rowe Lori, Tondella M Lucia, Williams Margaret M. Genome announcements 2016 4(5) .
Genome announcements 2016 4(5)
Genome Structural Diversity among 31 Bordetella pertussis Isolates from Two Recent U.S. Whooping Cough Statewide Epidemics.
Bowden Katherine E, Weigand Michael R, Peng Yanhui, Cassiday Pamela K, Sammons Scott, Knipe Kristen, Rowe Lori A, Loparev Vladimir, Sheth Mili, Weening Keeley, Tondella M Lucia, Williams Margaret M. mSphere 1(3) .
mSphere 1(3)
Construction of Recombinant HVT Expressing PmpD, and Immunological Evaluation against Chlamydia psittaci and Marek's Disease Virus.
Liu Shanshan, Sun Wei, Chu Jun, Huang Xiufen, Wu Zongxue, Yan Minxin, Zhang Qiang, Zhao Peng, Igietseme Joseph U, Black Carolyn M, He Cheng, Li Yongqing. PloS one 2015 10(4) e0124992 .
PloS one 2015 10(4) e0124992
Geographic and temporal trends in the molecular epidemiology and genetic mechanisms of transmitted HIV-1 drug resistance: an individual-patient- and sequence-level meta-analysis.
Rhee Soo-Yon, Blanco Jose Luis, Jordan Michael R, Taylor Jonathan, Lemey Philippe, Varghese Vici, Hamers Raph L, Bertagnolio Silvia, Rinke de Wit Tobias F, Aghokeng Avelin F, Albert Jan, Avi Radko, Avila-Rios Santiago, Bessong Pascal O, Brooks James I, Boucher Charles A B, Brumme Zabrina L, Busch Michael P, Bussmann Hermann, Chaix Marie-Laure, Chin Bum Sik, D'Aquin Toni T, De Gascun Cillian F, Derache Anne, Descamps Diane, Deshpande Alaka K, Djoko Cyrille F, Eshleman Susan H, Fleury Herve, Frange Pierre, Fujisaki Seiichiro, Harrigan P Richard, Hattori Junko, Holguin Africa, Hunt Gillian M, Ichimura Hiroshi, Kaleebu Pontiano, Katzenstein David, Kiertiburanakul Sasisopin, Kim Jerome H, Kim Sung Soon, Li Yanpeng, Lutsar Irja, Morris Lynn, Ndembi Nicaise, Ng Kee Peng, Paranjape Ramesh S, Peeters Martine, Poljak Mario, Price Matt A, Ragonnet-Cronin Manon L, Reyes-Terán Gustavo, Rolland Morgane, Sirivichayakul Sunee, Smith Davey M, Soares Marcelo A, Soriano Vincent V, Ssemwanga Deogratius, Stanojevic Maja, Stefani Mariane A, Sugiura Wataru, Sungkanuparph Somnuek, Tanuri Amilcar, Tee Kok Keng, Truong Hong-Ha M, van de Vijver David A M C, Vidal Nicole, Yang Chunfu, Yang Rongge, Yebra Gonzalo, Ioannidis John P A, Vandamme Anne-Mieke, Shafer Robert W. PLoS Med. 2015 Apr 12(4) e1001810 .
PLoS Med. 2015 Apr 12(4) e1001810
The draft genome sequence of the ferret (Mustela putorius furo) facilitates study of human respiratory disease.
Peng Xinxia, Alföldi Jessica, Gori Kevin, Eisfeld Amie J, Tyler Scott R, Tisoncik-Go Jennifer, Brawand David, Law G Lynn, Skunca Nives, Hatta Masato, Gasper David J, Kelly Sara M, Chang Jean, Thomas Matthew J, Johnson Jeremy, Berlin Aaron M, Lara Marcia, Russell Pamela, Swofford Ross, Turner-Maier Jason, Young Sarah, Hourlier Thibaut, Aken Bronwen, Searle Steve, Sun Xingshen, Yi Yaling, Suresh M, Tumpey Terrence M, Siepel Adam, Wisely Samantha M, Dessimoz Christophe, Kawaoka Yoshihiro, Birren Bruce W, Lindblad-Toh Kerstin, Di Palma Federica, Engelhardt John F, Palermo Robert E, Katze Michael G. Nat. Biotechnol. 2014 Dec 32(12) 1250-5 .
Nat. Biotechnol. 2014 Dec 32(12) 1250-5
Imputation and subset-based association analysis across different cancer types identifies multiple independent risk loci in the TERT-CLPTM1L region on chromosome 5p15.33.
Wang Zhaoming, Zhu Bin, Zhang Mingfeng, Parikh Hemang, Jia Jinping, Chung Charles C, Sampson Joshua N, Hoskins Jason W, Hutchinson Amy, Burdette Laurie, Ibrahim Abdisamad, Hautman Christopher, Raj Preethi S, Abnet Christian C, Adjei Andrew A, Ahlbom Anders, Albanes Demetrius, Allen Naomi E, Ambrosone Christine B, Aldrich Melinda, Amiano Pilar, Amos Christopher, Andersson Ulrika, Andriole Gerald, Andrulis Irene L, Arici Cecilia, Arslan Alan A, Austin Melissa A, Baris Dalsu, Barkauskas Donald A, Bassig Bryan A, Beane Freeman Laura E, Berg Christine D, Berndt Sonja I, Bertazzi Pier Alberto, Biritwum Richard B, Black Amanda, Blot William, Boeing Heiner, Boffetta Paolo, Bolton Kelly, Boutron-Ruault Marie-Christine, Bracci Paige M, Brennan Paul, Brinton Louise A, Brotzman Michelle, Bueno-de-Mesquita H Bas, Buring Julie E, Butler Mary Ann, Cai Qiuyin, Cancel-Tassin Geraldine, Canzian Federico, Cao Guangwen, Caporaso Neil E, Carrato Alfredo, Carreon Tania, Carta Angela, Chang Gee-Chen, Chang I-Shou, Chang-Claude Jenny, Che Xu, Chen Chien-Jen, Chen Chih-Yi, Chen Chung-Hsing, Chen Constance, Chen Kuan-Yu, Chen Yuh-Min, Chokkalingam Anand P, Chu Lisa W, Clavel-Chapelon Francoise, Colditz Graham A, Colt Joanne S, Conti David, Cook Michael B, Cortessis Victoria K, Crawford E David, Cussenot Olivier, Davis Faith G, De Vivo Immaculata, Deng Xiang, Ding Ti, Dinney Colin P, Di Stefano Anna Luisa, Diver W Ryan, Duell Eric J, Elena Joanne W, Fan Jin-Hu, Feigelson Heather Spencer, Feychting Maria, Figueroa Jonine D, Flanagan Adrienne M, Fraumeni Joseph F, Freedman Neal D, Fridley Brooke L, Fuchs Charles S, Gago-Dominguez Manuela, Gallinger Steven, Gao Yu-Tang, Gapstur Susan M, Garcia-Closas Montserrat, Garcia-Closas Reina, Gastier-Foster Julie M, Gaziano J Michael, Gerhard Daniela S, Giffen Carol A, Giles Graham G, Gillanders Elizabeth M, Giovannucci Edward L, Goggins Michael, Gokgoz Nalan, Goldstein Alisa M, Gonzalez Carlos, Gorlick Richard, Greene Mark H, Gross Myron, Grossman H Barton, Grubb Robert, Gu Jian, Guan Peng, Haiman Christopher A, Hallmans Goran, Hankinson Susan E, Harris Curtis C, Hartge Patricia, Hattinger Claudia, Hayes Richard B, He Qincheng, Helman Lee, Henderson Brian E, Henriksson Roger, Hoffman-Bolton Judith, Hohensee Chancellor, Holly Elizabeth A, Hong Yun-Chul, Hoover Robert N, Hosgood H Dean, Hsiao Chin-Fu, Hsing Ann W, Hsiung Chao Agnes, Hu Nan, Hu Wei, Hu Zhibin, Huang Ming-Shyan, Hunter David J, Inskip Peter D, Ito Hidemi, Jacobs Eric J, Jacobs Kevin B, Jenab Mazda, Ji Bu-Tian, Johansen Christoffer, Johansson Mattias, Johnson Alison, Kaaks Rudolf, Kamat Ashish M, Kamineni Aruna, Karagas Margaret, Khanna Chand, Khaw Kay-Tee, Kim Christopher, Kim In-Sam, Kim Jin Hee, Kim Yeul Hong, Kim Young-Chul, Kim Young Tae, Kang Chang Hyun, Jung Yoo Jin, Kitahara Cari M, Klein Alison P, Klein Robert, Kogevinas Manolis, Koh Woon-Puay, Kohno Takashi, Kolonel Laurence N, Kooperberg Charles, Kratz Christian P, Krogh Vittorio, Kunitoh Hideo, Kurtz Robert C, Kurucu Nilgun, Lan Qing, Lathrop Mark, Lau Ching C, Lecanda Fernando, Lee Kyoung-Mu, Lee Maxwell P, Le Marchand Loic, Lerner Seth P, Li Donghui, Liao Linda M, Lim Wei-Yen, Lin Dongxin, Lin Jie, Lindstrom Sara, Linet Martha S, Lissowska Jolanta, Liu Jianjun, Ljungberg Börje, Lloreta Josep, Lu Daru, Ma Jing, Malats Nuria, Mannisto Satu, Marina Neyssa, Mastrangelo Giuseppe, Matsuo Keitaro, McGlynn Katherine A, McKean-Cowdin Roberta, McNeill Lorna H, McWilliams Robert R, Melin Beatrice S, Meltzer Paul S, Mensah James E, Miao Xiaoping, Michaud Dominique S, Mondul Alison M, Moore Lee E, Muir Kenneth, Niwa Shelley, Olson Sara H, Orr Nick, Panico Salvatore, Park Jae Yong, Patel Alpa V, Patino-Garcia Ana, Pavanello Sofia, Peeters Petra H M, Peplonska Beata, Peters Ulrike, Petersen Gloria M, Picci Piero, Pike Malcolm C, Porru Stefano, Prescott Jennifer, Pu Xia, Purdue Mark P, Qiao You-Lin, Rajaraman Preetha, Riboli Elio, Risch Harvey A, Rodabough Rebecca J, Rothman Nathaniel, Ruder Avima M, Ryu Jeong-Seon, Sanson Marc, Schned Alan, Schumacher Fredrick R, Schwartz Ann G, Schwartz Kendra L, Schwenn Molly, Scotlandi Katia, Seow Adeline, Serra Consol, Serra Massimo, Sesso Howard D, Severi Gianluca, Shen Hongbing, Shen Min, Shete Sanjay, Shiraishi Kouya, Shu Xiao-Ou, Siddiq Afshan, Sierrasesumaga Luis, Sierri Sabina, Loon Sihoe Alan Dart, Silverman Debra T, Simon Matthias, Southey Melissa C, Spector Logan, Spitz Margaret, Stampfer Meir, Stattin Par, Stern Mariana C, Stevens Victoria L, Stolzenberg-Solomon Rachael Z, Stram Daniel O, Strom Sara S, Su Wu-Chou, Sund Malin, Sung Sook Whan, Swerdlow Anthony, Tan Wen, Tanaka Hideo, Tang Wei, Tang Ze-Zhang, Tardon Adonina, Tay Evelyn, Taylor Philip R, Tettey Yao, Thomas David M, Tirabosco Roberto, Tjonneland Anne, Tobias Geoffrey S, Toro Jorge R, Travis Ruth C, Trichopoulos Dimitrios, Troisi Rebecca, Truelove Ann, Tsai Ying-Huang, Tucker Margaret A, Tumino Rosario, Van Den Berg David, Van Den Eeden Stephen K, Vermeulen Roel, Vineis Paolo, Visvanathan Kala, Vogel Ulla, Wang Chaoyu, Wang Chengfeng, Wang Junwen, Wang Sophia S, Weiderpass Elisabete, Weinstein Stephanie J, Wentzensen Nicolas, Wheeler William, White Emily, Wiencke John K, Wolk Alicja, Wolpin Brian M, Wong Maria Pik, Wrensch Margaret, Wu Chen, Wu Tangchun, Wu Xifeng, Wu Yi-Long, Wunder Jay S, Xiang Yong-Bing, Xu Jun, Yang Hannah P, Yang Pan-Chyr, Yatabe Yasushi, Ye Yuanqing, Yeboah Edward D, Yin Zhihua, Ying Chen, Yu Chong-Jen, Yu Kai, Yuan Jian-Min, Zanetti Krista A, Zeleniuch-Jacquotte Anne, Zheng Wei, Zhou Baosen, Mirabello Lisa, Savage Sharon A, Kraft Peter, Chanock Stephen J, Yeager Meredith, Landi Maria Terese, Shi Jianxin, Chatterjee Nilanjan, Amundadottir Laufey T. Hum. Mol. Genet. 2014 Dec 15. 23(24) 6616-33 .
Hum. Mol. Genet. 2014 Dec 15. 23(24) 6616-33
Integrative deep sequencing of the mouse lung transcriptome reveals differential expression of diverse classes of small RNAs in response to respiratory virus infection.
Peng Xinxia, Gralinski Lisa, Ferris Martin T, Frieman Matthew B, Thomas Matthew J, Proll Sean, Korth Marcus J, Tisoncik Jennifer R, Heise Mark, Luo Shujun, Schroth Gary P, Tumpey Terrence M, Li Chengjun, Kawaoka Yoshihiro, Baric Ralph S, Katze Michael G. MBio 2011 2(6) .
MBio 2011 2(6)
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