CDC-Authored Genomics and Precision Health Publications Database

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Last data update: Sep 16, 2024. (Total: 6309 publications)

All Cancer Diabetes Economic Equity Environmental FHH HLBS ID Implementation ND PGx PI Rare RCH dataset

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Records 1-21 (of 21 Records)

Query Trace: Paden CR[original query]
Effectiveness of updated 2023-2024 (monovalent XBB.1.5) COVID-19 vaccination against SARS-CoV-2 Omicron XBB and BA.2.86/JN.1 lineage hospitalization and a comparison of clinical severity-IVY Network, 26 hospitals, October 18, 2023-March 9, 2024 Ma KC , Surie D , Lauring AS , Martin ET , Leis AM , Papalambros L , Gaglani M , Columbus C , Gottlieb RL , Ghamande S , Peltan ID , Brown SM , Ginde AA , Mohr NM , Gibbs KW , Hager DN , Saeed S , Prekker ME , Gong MN , Mohamed A , Johnson NJ , Srinivasan V , Steingrub JS , Khan A , Hough CL , Duggal A , Wilson JG , Qadir N , Chang SY , Mallow C , Kwon JH , Parikh B , Exline MC , Vaughn IA , Ramesh M , Safdar B , Mosier J , Harris ES , Shapiro NI , Felzer J , Zhu Y , Grijalva CG , Halasa N , Chappell JD , Womack KN , Rhoads JP , Baughman A , Swan SA , Johnson CA , Rice TW , Casey JD , Blair PW , Han JH , Ellington S , Lewis NM , Thornburg N , Paden CR , Atherton LJ , Self WH , Dawood FS , DeCuir J . Clin Infect Dis 2024
Antigenic characterization of circulating and emerging SARS-CoV-2 variants in the U.S. Throughout the Delta to Omicron waves Di H , Pusch EA , Jones J , Kovacs NA , Hassell N , Sheth M , Lynn KS , Keller MW , Wilson MM , Keong LM , Cui D , Park SH , Chau R , Lacek KA , Liddell JD , Kirby MK , Yang G , Johnson M , Thor S , Zanders N , Feng C , Surie D , DeCuir J , Lester SN , Atherton L , Hicks H , Tamin A , Harcourt JL , Coughlin MM , Self WH , Rhoads JP , Gibbs KW , Hager DN , Shapiro NI , Exline MC , Lauring AS , Rambo-Martin B , Paden CR , Kondor RJ , Lee JS , Barnes JR , Thornburg NJ , Zhou B , Wentworth DE , Davis CT . Vaccines (Basel) 2024 12 (5)
Early estimates of updated 2023-2024 (monovalent XBB.1.5) COVID-19 vaccine effectiveness against symptomatic SARS-CoV-2 infection attributable to co-circulating Omicron variants among immunocompetent adults - increasing community access to testing program, United States, September 2023-January 2024 Link-Gelles R , Ciesla AA , Mak J , Miller JD , Silk BJ , Lambrou AS , Paden CR , Shirk P , Britton A , Smith ZR , Fleming-Dutra KE . MMWR Morb Mortal Wkly Rep 2024 73 (4) 77-83
Early detection and surveillance of the SARS-CoV-2 variant BA.2.86 - Worldwide, July-October 2023 Lambrou AS , South E , Ballou ES , Paden CR , Fuller JA , Bart SM , Butryn DM , Novak RT , Browning SD , Kirby AE , Welsh RM , Cornforth DM , MacCannell DR , Friedman CR , Thornburg NJ , Hall AJ , Hughes LJ , Mahon BE , Daskalakis DC , Shah ND , Jackson BR , Kirking HL . MMWR Morb Mortal Wkly Rep 2023 72 (43) 1162-1167
Genomic surveillance for SARS-CoV-2 variants: Circulation of Omicron lineages - United States, January 2022-May 2023 Ma KC , Shirk P , Lambrou AS , Hassell N , Zheng XY , Payne AB , Ali AR , Batra D , Caravas J , Chau R , Cook PW , Howard D , Kovacs NA , Lacek KA , Lee JS , MacCannell DR , Malapati L , Mathew S , Mittal N , Nagilla RR , Parikh R , Paul P , Rambo-Martin BL , Shepard SS , Sheth M , Wentworth DE , Winn A , Hall AJ , Silk BJ , Thornburg N , Kondor R , Scobie HM , Paden CR . MMWR Morb Mortal Wkly Rep 2023 72 (24) 651-656
Spike Gene Target Amplification in a Diagnostic Assay as a Marker for Public Health Monitoring of Emerging SARS-CoV-2 Variants - United States, November 2021-January 2023. Scobie HM , Ali AR , Shirk P , Smith ZR , Paul P , Paden CR , Hassell N , Zheng XY , Lambrou AS , Kondor R , MacCannell D , Thornburg NJ , Miller J , Wentworth D , Silk BJ . MMWR Morb Mortal Wkly Rep 2023 72 (5) 125-127
COVID-19 on the Nile: a cross-sectional investigation of COVID-19 among Nile River cruise travellers returning to the United States, February-march 2020. Guagliardo SAJ , Quilter LAS , Uehara A , White SB , Talarico S , Tong S , Paden CR , Zhang J , Li Y , Pray I , Novak RT , Fukunaga R , Rodriguez A , Medley AM , Wagner R , Weinberg M , Brown CM , Friedman CR . J Travel Med 2022
Benchmark datasets for SARS-CoV-2 surveillance bioinformatics. Xiaoli L , Hagey JV , Park DJ , Gulvik CA , Young EL , Alikhan NF , Lawsin A , Hassell N , Knipe K , Oakeson KF , Retchless AC , Shakya M , Lo CC , Chain P , Page AJ , Metcalf BJ , Su M , Rowell J , Vidyaprakash E , Paden CR , Huang AD , Roellig D , Patel K , Winglee K , Weigand MR , Katz LS . PeerJ 2022 10 e13821
SARS-CoV-2 Delta-Omicron Recombinant Viruses, United States. Lacek KA , Rambo-Martin BL , Batra D , Zheng XY , Hassell N , Sakaguchi H , Peacock T , Groves N , Keller M , Wilson MM , Sheth M , Davis ML , Borroughs M , Gerhart J , Shepard SS , Cook PW , Lee J , Wentworth DE , Barnes JR , Kondor R , Paden CR . Emerg Infect Dis 2022 28 (7) 1442-1445
Unrecognized introductions of SARS-CoV-2 into the US state of Georgia shaped the early epidemic. Babiker A , Martin MA , Marvil C , Bellman S , Petit Iii RA , Bradley HL , Stittleburg VD , Ingersoll J , Kraft CS , Li Y , Zhang J , Paden CR , Read TD , Waggoner JJ , Koelle K , Piantadosi A . Virus Evol 2022 8 (1) veac011
Genomic Surveillance for SARS-CoV-2 Variants: Predominance of the Delta (B.1.617.2) and Omicron (B.1.1.529) Variants - United States, June 2021-January 2022. Lambrou AS , Shirk P , Steele MK , Paul P , Paden CR , Cadwell B , Reese HE , Aoki Y , Hassell N , Caravas J , Kovacs NA , Gerhart JG , Ng HJ , Zheng XY , Beck A , Chau R , Cintron R , Cook PW , Gulvik CA , Howard D , Jang Y , Knipe K , Lacek KA , Moser KA , Paskey AC , Rambo-Martin BL , Nagilla RR , Rethchless AC , Schmerer MW , Seby S , Shephard SS , Stanton RA , Stark TJ , Uehara A , Unoarumhi Y , Bentz ML , Burhgin A , Burroughs M , Davis ML , Keller MW , Keong LM , Le SS , Lee JS , Madden Jr JC , Nobles S , Owouor DC , Padilla J , Sheth M , Wilson MM , Talarico S , Chen JC , Oberste MS , Batra D , McMullan LK , Halpin AL , Galloway SE , MacCannell DR , Kondor R , Barnes J , MacNeil A , Silk BJ , Dugan VG , Scobie HM , Wentworth DE . MMWR Morb Mortal Wkly Rep 2022 71 (6) 206-211
Isolation and characterization of novel reassortant mammalian orthoreovirus from pigs in the United States. Wang L , Li Y , Walsh T , Shen Z , Li Y , Nath ND , Lee J , Zheng B , Tao Y , Paden CR , Queen K , Zhang S , Tong S , Ma W . Emerg Microbes Infect 2021 10 (1) 1-43
Introduction, Transmission Dynamics, and Fate of Early SARS-CoV-2 Lineages in Santa Clara County, California. Villarino E , Deng X , Kemper CA , Jorden MA , Bonin B , Rudman SL , Han GS , Yu G , Wang C , Federman S , Bushnell B , Wadford DA , Lin W , Tao Y , Paden CR , Bhatnagar J , MacCannell T , Tong S , Batson J , Chiu CY . J Infect Dis 2021 224 (2) 207-217
Evidence of SARS-CoV-2 Replication and Tropism in the Lungs, Airways and Vascular Endothelium of Patients with Fatal COVID-19: An Autopsy Case-Series. Bhatnagar J , Gary J , Reagan-Steiner S , Estetter LB , Tong S , Tao Y , Denison AM , Lee E , DeLeon-Carnes M , Li Y , Uehara A , Paden CR , Leitgeb B , Uyeki TM , Martines RB , Ritter JM , Paddock CD , Shieh WJ , Zaki SR . J Infect Dis 2021 223 (5) 752-764
Genomic surveillance reveals multiple introductions of SARS-CoV-2 into Northern California. Deng X , Gu W , Federman S , du Plessis L , Pybus OG , Faria N , Wang C , Yu G , Bushnell B , Pan CY , Guevara H , Sotomayor-Gonzalez A , Zorn K , Gopez A , Servellita V , Hsu E , Miller S , Bedford T , Greninger AL , Roychoudhury P , Starita LM , Famulare M , Chu HY , Shendure J , Jerome KR , Anderson C , Gangavarapu K , Zeller M , Spencer E , Andersen KG , MacCannell D , Paden CR , Li Y , Zhang J , Tong S , Armstrong G , Morrow S , Willis M , Matyas BT , Mase S , Kasirye O , Park M , Masinde G , Chan C , Yu AT , Chai SJ , Villarino E , Bonin B , Wadford DA , Chiu CY . Science 2020 369 (6503) 582-587
Isolation and growth characterization of novel full length and deletion mutant human MERS-CoV strains from clinical specimens collected during 2015. Tamin A , Queen K , Paden CR , Lu X , Andres E , Sakthivel SK , Li Y , Tao Y , Zhang J , Kamili S , Assiri AM , Alshareef A , Alaifan TA , Altamimi AM , Jokhdar H , Watson JT , Gerber SI , Tong S , Thornburg NJ . J Gen Virol 2019 100 (11) 1523-1529
Scope and extent of healthcare-associated Middle East respiratory syndrome coronavirus transmission during two contemporaneous outbreaks in Riyadh, Saudi Arabia, 2017. Alanazi KH , Killerby ME , Biggs HM , Abedi GR , Jokhdar H , Alsharef AA , Mohammed M , Abdalla O , Almari A , Bereagesh S , Tawfik S , Alresheedi H , Alhakeem RF , Hakawi A , Alfalah H , Amer H , Thornburg NJ , Tamin A , Trivedi S , Tong S , Lu X , Queen K , Li Y , Sakthivel SK , Tao Y , Zhang J , Paden CR , Al-Abdely HM , Assiri AM , Gerber SI , Watson JT . Infect Control Hosp Epidemiol 2019 40 (1) 79-88
Comprehensive viral enrichment enables sensitive respiratory virus genomic identification and analysis by next generation sequencing. O'Flaherty BM , Li Y , Tao Y , Paden CR , Queen K , Zhang J , Dinwiddie DL , Gross SM , Schroth GP , Tong S . Genome Res 2018 28 (6) 869-877
Zoonotic origin and transmission of Middle East respiratory syndrome coronavirus in the UAE. Paden CR , Yusof MFBM , Al Hammadi ZM , Queen K , Tao Y , Eltahir YM , Elsayed EA , Marzoug BA , Bensalah OKA , Khalafalla AI , Al Mulla M , Elkheir KA , Issa ZB , Pradeep K , Elsaleh FN , Imambaccus H , Sasse J , Weber S , Shi M , Zhang J , Li Y , Pham H , Kim L , Hall AJ , Gerber SI , Al Hosani FI , Tong S , Al Muhairi SSM . Zoonoses Public Health 2017 65 (3) 322-333
Diversity of Middle East respiratory syndrome coronaviruses in 109 dromedary camels based on full-genome sequencing, Abu Dhabi, United Arab Emirates. Yusof MF , Queen K , Eltahir YM , Paden CR , Al Hammadi Zmah , Tao Y , Li Y , Khalafalla AI , Shi M , Zhang J , Mohamed Msae , Abd Elaal Ahmed MH , Azeez IA , Bensalah OK , Eldahab ZS , Al Hosani FI , Gerber SI , Hall AJ , Tong S , Al Muhairi SS . Emerg Microbes Infect 2017 6 (11) e101
Identification of diverse viruses in upper respiratory samples in dromedary camels from United Arab Emirates. Li Y , Khalafalla AI , Paden CR , Yusof MF , Eltahir YM , Al Hammadi ZM , Tao Y , Queen K , Hosani FA , Gerber SI , Hall AJ , Al Muhairi S , Tong S . PLoS One 2017 12 (9) e0184718