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CDC-Authored Genomics and Precision Health Publications Database|Home|Public Health Genomics and Precision Health Knowledge Base (PHGKB)

CDC-Authored Genomics and Precision Health Publications Database


Last data update: Dec 02, 2024. (Total: 6432 publications)
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Records 1-30 (of 33 Records)
Query Trace: Oliver S[original query]
Rapid outbreak sequencing of Ebola virus in Sierra Leone identifies transmission chains linked to sporadic cases.
Arias A , Watson SJ , Asogun D , Tobin EA , Lu J , Phan MVT , Jah U , Wadoum REG , Meredith L , Thorne L , Caddy S , Tarawalie A , Langat P , Dudas G , Faria NR , Dellicour S , Kamara A , Kargbo B , Kamara BO , Gevao S , Cooper D , Newport M , Horby P , Dunning J , Sahr F , Brooks T , Simpson AJH , Groppelli E , Liu G , Mulakken N , Rhodes K , Akpablie J , Yoti Z , Lamunu M , Vitto E , Otim P , Owilli C , Boateng I , Okoror L , Omomoh E , Oyakhilome J , Omiunu R , Yemisis I , Adomeh D , Ehikhiametalor S , Akhilomen P , Aire C , Kurth A , Cook N , Baumann J , Gabriel M , Wölfel R , Di Caro A , Carroll MW , Günther S , Redd J , Naidoo D , Pybus OG , Rambaut A , Kellam P , Goodfellow I , Cotten M .
Virus Evol 2016 2 (1) vew016
Development of COVID-19 vaccine policy - United States, 2020-2023
Oliver SE , Wallace M , Twentyman E , Moulia DL , Godfrey M , Link-Gelles R , Meyer S , Fleming-Dutra KE , Hall E , Wolicki J , MacNeil J , Bell BP , Lee GM , Daley MF , Cohn A , Wharton M .
Vaccine 2023 type
Gut microbiome perturbation, antibiotic resistance, and Escherichia coli strain dynamics associated with international travel: a metagenomic analysis
Worby CJ , Sridhar S , Turbett SE , Becker MV , Kogut L , Sanchez V , Bronson RA , Rao SR , Oliver E , Walker AT , Walters MS , Kelly P , Leung DT , Knouse MC , Hagmann SHF , Harris JB , Ryan ET , Earl AM , LaRocque RC .
Lancet Microbe 2023 4 (10) e790-e799 type
Interim recommendations for use of bivalent mRNA COVID-19 vaccines for persons aged 6 months - United States, April 2023
Moulia DL , Wallace M , Roper LE , Godfrey M , Rosenblum HG , Link-Gelles R , Britton A , Daley MF , Meyer S , Fleming-Dutra KE , Oliver SE , Twentyman E .
MMWR Morb Mortal Wkly Rep 2023 72 (24) 657-662
Epidemiology of invasive nontypeable Haemophilus influenzae disease-United States, 2008-2019.
Oliver SE , Rubis AB , Soeters HM , Reingold A , Barnes M , Petit S , Farley MM , Harrison LH , Como-Sabetti K , Khanlian SA , Wester R , Thomas A , Schaffner W , Marjuki H , Wang X , Hariri S .
Clin Infect Dis 2023 76 (11) 1889-1895 type
Towards comprehensive understanding of bacterial genetic diversity: large-scale amplifications in Bordetella pertussis and Mycobacterium tuberculosis.
Abrahams JS , Weigand MR , Ring N , MacArthur I , Etty J , Peng S , Williams MM , Bready B , Catalano AP , Davis JR , Kaiser MD , Oliver JS , Sage JM , Bagby S , Tondella ML , Gorringe AR , Preston A .
Microb Genom 2022 8 (2)
SARS-CoV-2 Variants of Interest and Concern naming scheme conducive for global discourse.
Konings F , Perkins MD , Kuhn JH , Pallen MJ , Alm EJ , Archer BN , Barakat A , Bedford T , Bhiman JN , Caly L , Carter LL , Cullinane A , de Oliveira T , Druce J , El Masry I , Evans R , Gao GF , Gorbalenya AE , Hamblion E , Herring BL , Hodcroft E , Holmes EC , Kakkar M , Khare S , Koopmans MPG , Korber B , Leite J , MacCannell D , Marklewitz M , Maurer-Stroh S , Rico JAM , Munster VJ , Neher R , Munnink BO , Pavlin BI , Peiris M , Poon L , Pybus O , Rambaut A , Resende P , Subissi L , Thiel V , Tong S , van der Werf S , von Gottberg A , Ziebuhr J , Van Kerkhove MD .
Nat Microbiol 2021 6 (7) 821-823
Impact of an Urban Sanitation Intervention on Enteric Pathogen Detection in Soils.
Capone D , Berendes D , Cumming O , Holcomb D , Knee J , Konstantinidis KT , Levy K , Nalá R , Risk BB , Stewart J , Brown J .
Environ Sci Technol 2021 55 (14) 9989-10000 type
American Academy of Optometry Microbial Keratitis Think Tank.
Szczotka-Flynn LB , Shovlin JP , Schnider CM , Caffery BE , Alfonso EC , Carnt NA , Chalmers RL , Collier S , Jacobs DS , Joslin CE , Kroken AR , Lakkis C , Pearlman E , Schein OD , Stapleton F , Tu E , Willcox MDP .
Optom Vis Sci 2021 98 (3) 182-198
Evaluation of health system readiness and coverage of intermittent preventive treatment of malaria in infants (IPTi) in Kambia district to inform national scale-up in Sierra Leone.
Lahuerta M , Sutton R , Mansaray A , Eleeza O , Gleason B , Akinjeji A , Jalloh MF , Toure M , Kassa G , Meshnick SR , Deutsch-Feldman M , Parmley L , Friedman M , Smith SJ , Rabkin M , Steinhardt L .
Malar J 2021 20 (1) 74
Evaluation of phylogenetic methods for inferring the direction of HIV transmission: HPTN 052.
Zhang Y , Wymant C , Laeyendecker O , Grabowski MK , Hall M , Hudelson S , Piwowar-Manning E , McCauley M , Gamble T , Hosseinipour MC , Kumarasamy N , Hakim JG , Kumwenda J , Mills LA , Santos BR , Grinsztejn B , Pilotto JH , Chariyalertsak S , Makhema J , Chen YQ , Cohen MS , Fraser C , Eshleman SH .
Clin Infect Dis 2021 72 (1) 30-37 type
The Advisory Committee on Immunization Practices' Ethical Principles for Allocating Initial Supplies of COVID-19 Vaccine - United States, 2020.
McClung N , Chamberland M , Kinlaw K , Bowen Matthew D , Wallace M , Bell BP , Lee GM , Talbot HK , Romero JR , Oliver SE , Dooling K .
MMWR Morb Mortal Wkly Rep 2020 69 (47) 1782-1786
Mitochondrial Genome Sequences of the Emerging Fungal Pathogen Candida auris .
Misas E , Chow NA , Gómez OM , Muñoz JF , McEwen JG , Litvintseva AP , Clay OK .
Front Microbiol 2020 11 560332 type
Genomic surveillance reveals multiple introductions of SARS-CoV-2 into Northern California.
Deng X , Gu W , Federman S , du Plessis L , Pybus OG , Faria N , Wang C , Yu G , Bushnell B , Pan CY , Guevara H , Sotomayor-Gonzalez A , Zorn K , Gopez A , Servellita V , Hsu E , Miller S , Bedford T , Greninger AL , Roychoudhury P , Starita LM , Famulare M , Chu HY , Shendure J , Jerome KR , Anderson C , Gangavarapu K , Zeller M , Spencer E , Andersen KG , MacCannell D , Paden CR , Li Y , Zhang J , Tong S , Armstrong G , Morrow S , Willis M , Matyas BT , Mase S , Kasirye O , Park M , Masinde G , Chan C , Yu AT , Chai SJ , Villarino E , Bonin B , Wadford DA , Chiu CY .
Science 2020 369 (6503) 582-587
Tracing the Evolutionary History and Global Expansion of Candida auris Using Population Genomic Analyses.
Chow NA , Munoz JF , Gade L , Berkow EL , Li X , Welsh RM , Forsberg K , Lockhart SR , Adam R , Alanio A , Alastruey-Izquierdo A , Althawadi S , Arauz AB , Ben-Ami R , Bharat A , Calvo B , Desnos-Ollivier M , Escandon P , Gardam D , Gunturu R , Heath CH , Kurzai O , Martin R , Litvintseva AP , Cuomo CA .
mBio 2020 11 (2) type
The impact of antimalarial resistance on the genetic structure of Plasmodium falciparum in the DRC.
Verity R , Aydemir O , Brazeau NF , Watson OJ , Hathaway NJ , Mwandagalirwa MK , Marsh PW , Thwai K , Fulton T , Denton M , Morgan AP , Parr JB , Tumwebaze PK , Conrad M , Rosenthal PJ , Ishengoma DS , Ngondi J , Gutman J , Mulenga M , Norris DE , Moss WJ , Mensah BA , Myers-Hansen JL , Ghansah A , Tshefu AK , Ghani AC , Meshnick SR , Bailey JA , Juliano JJ .
Nat Commun 2020 11 (1) 2107 type
Low levels of HIV-1 drug resistance mutations in patients who achieved viral re-suppression without regimen switch: a retrospective study.
Onwuamah CK , Okpokwu J , Audu R , Imade G , Meloni ST , Okwuraiwe A , Chebu P , Musa AZ , Chaplin B , Dalhatu I , Agbaji O , Samuels J , Ezechi O , Ahmed M , Odaibo G , Olaleye DO , Okonkwo P , Salako BL , Raizes E , Yang C , Kanki PJ , Idigbe EO .
BMC Microbiol 2020 20 (1) 17 type
Gut carriage of antimicrobial resistance genes among young children in urban Maputo, Mozambique: Associations with enteric pathogen carriage and environmental risk factors.
Berendes D , Knee J , Sumner T , Capone D , Lai A , Wood A , Patel S , Nala R , Cumming O , Brown J .
PLoS One 2019 14 (11) e0225464
What Is Going on With the Genus Dermacentor? Hybridizations, Introgressions, Oh My!
Goddard J , Allerdice M , Portugal JS , Moraru GM , Paddock CD , King J .
J Med Entomol 2019 57 (3) 653-656 type
Development of a World Health Organization International Reference Panel for different genotypes of hepatitis E virus for nucleic acid amplification testing.
Baylis SA , Hanschmann KO , Matsubayashi K , Sakata H , Roque-Afonso AM , Kaiser M , Corman VM , Kamili S , Aggarwal R , Trehanpati N , Gartner T , Thomson EC , Davis CA , da Silva Filipe A , Abdelrahman TT , Blumel J , Terao E .
J Clin Virol 2019 119 60-67
A computational method for the identification of Dengue, Zika and Chikungunya virus species and genotypes.
Fonseca V , Libin PJK , Theys K , Faria NR , Nunes MRT , Restovic MI , Freire M , Giovanetti M , Cuypers L , Nowe A , Abecasis A , Deforche K , Santiago GA , Siqueira IC , San EJ , Machado KCB , Azevedo V , Filippis AMB , Cunha RVD , Pybus OG , Vandamme AM , Alcantara LCJ , de Oliveira T .
PLoS Negl Trop Dis 2019 13 (5) e0007231
Phylogenetic methods inconsistently predict direction of HIV transmission among heterosexual pairs in the HPTN052 cohort.
Rose R , Hall M , Redd AD , Lamers S , Barbier AE , Porcella SF , Hudelson SE , Piwowar-Manning E , McCauley M , Gamble T , Wilson EA , Kumwenda J , Hosseinipour MC , Hakim JG , Kumarasamy N , Chariyalertsak S , Pilotto JH , Grinsztejn B , Mills LA , Makhema J , Santos BR , Chen YQ , Quinn TC , Fraser C , Cohen MS , Eshleman SH , Laeyendecker O .
J Infect Dis 2018 220 (9) 1406-1413 type
Outbreak of Tattoo-Associated Nontuberculous Mycobacterial Skin Infections.
Griffin I , Schmitz A , Oliver C , Pritchard S , Zhang G , Rico E , Davenport E , Llau A , Moore E , Fernandez D , Mejia-Echeverry A , Suarez J , Noya-Chaveco P , Elmir S , Jean R , Pettengill JB , Hollinger KA , Chou K , Williams-Hill D , Zaki S , Muehlenbachs A , Keating MK , Bhatnagar J , Rowlinson MC , Chiribau C , Rivera L .
Clin Infect Dis 2018 69 (6) 949-955 type
Cross-Sectional HIV Incidence Surveillance: A Benchmarking of Approaches for Estimating the 'Mean Duration of Recent Infection'.
Kassanjee R , De Angelis D , Farah M , Hanson D , Labuschagne JPL , Laeyendecker O , Le Vu S , Tom B , Wang R , Welte A .
Stat Commun Infect Dis 2017 9 (1)
Standardization and validation of real time PCR assays for the diagnosis of histoplasmosis using three molecular targets in an animal model.
Lopez LF , Munoz CO , Caceres DH , Tobon AM , Loparev V , Clay O , Chiller T , Litvintseva A , Gade L , Gonzalez A , Gomez BL .
PLoS One 2017 12 (12) e0190311
Virus genomes reveal factors that spread and sustained the Ebola epidemic.
Dudas G , Carvalho LM , Bedford T , Tatem AJ , Baele G , Faria NR , Park DJ , Ladner JT , Arias A , Asogun D , Bielejec F , Caddy SL , Cotten M , D'Ambrozio J , Dellicour S , Caro AD , Diclaro JW , Duraffour S , Elmore MJ , Fakoli LS , Faye O , Gilbert ML , Gevao SM , Gire S , Gladden-Young A , Gnirke A , Goba A , Grant DS , Haagmans BL , Hiscox JA , Jah U , Kugelman JR , Liu D , Lu J , Malboeuf CM , Mate S , Matthews DA , Matranga CB , Meredith LW , Qu J , Quick J , Pas SD , Phan MV , Pollakis G , Reusken CB , Sanchez-Lockhart M , Schaffner SF , Schieffelin JS , Sealfon RS , Simon-Loriere E , Smits SL , Stoecker K , Thorne L , Tobin EA , Vandi MA , Watson SJ , West K , Whitmer S , Wiley MR , Winnicki SM , Wohl S , Wolfel R , Yozwiak NL , Andersen KG , Blyden SO , Bolay F , Carroll MW , Dahn B , Diallo B , Formenty P , Fraser C , Gao GF , Garry RF , Goodfellow I , Gunther S , Happi CT , Holmes EC , Kargbo B , Keita S , Kellam P , Koopmans MP , Kuhn JH , Loman NJ , Magassouba N , Naidoo D , Nichol ST , Nyenswah T , Palacios G , Pybus OG , Sabeti PC , Sall A , Stroher U , Wurie I , Suchard MA , Lemey P , Rambaut A .
Nature 2017 544 (7650) 309-315
Molecular Typing of Treponema pallidum in Ocular Syphilis.
Oliver S , Sahi SK , Tantalo LC , Godornes C , Neblett Fanfair R , Markowitz LE , Lukehart SA , Marra CM .
Sex Transm Dis 2016 43 (8) 524-7
De novo transcriptome reconstruction and annotation of the Egyptian rousette bat.
Lee AK , Kulcsar KA , Elliott O , Khiabanian H , Nagle ER , Jones ME , Amman BR , Sanchez-Lockhart M , Towner JS , Palacios G , Rabadan R .
BMC Genomics 2015 16 1033
Preconception folic acid supplementation and risk for chromosome 21 nondisjunction: a report from the National Down Syndrome Project.
Hollis ND , Allen EG , Oliver TR , Tinker SW , Druschel C , Hobbs CA , O'Leary LA , Romitti PA , Royle MH , Torfs CP , Freeman SB , Sherman SL , Bean LJ .
Am J Med Genet A 2013 161 (3) 438-44
The group A streptococcal collagen-like protein-1, Scl1, mediates biofilm formation by targeting the extra domain A-containing variant of cellular fibronectin expressed in wounded tissue
Oliver-Kozup H , Martin KH , Schwegler-Berry D , Green BJ , Betts C , Shinde AV , Van De Water L , Lukomski S .
Mol Microbiol 2013 87 (3) 672-89
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