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CDC-Authored Genomics and Precision Health Publications Database|Home|Public Health Genomics and Precision Health Knowledge Base (PHGKB)

CDC-Authored Genomics and Precision Health Publications Database


Last data update: Sep 09, 2024. (Total: 6293 publications)
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Records 1-20 (of 20 Records)
Query Trace: Ochieng JB[original query]
Clinical severity of enteric viruses detected using a quantitative molecular assay compared to conventional assays in the Global Enteric Multicenter Study
Cates J , Powell H , Platts-Mills J , Nasrin D , Panchalingam S , Sow SO , Traore A , Sur D , Ramamurthy T , Zaidi AKM , Kabir F , Faruque ASG , Ahmed D , Breiman RF , Omore R , Ochieng JB , Hossain MJ , Antonio M , Mandomando I , Vubil D , Nataro JP , Levine MM , Parashar UD , Kotloff KL , Tate JE .
J Infect Dis 2024 type
Diarrhea in young children from low-income countries leads to large-scale alterations in intestinal microbiota composition.
Pop M , Walker AW , Paulson J , Lindsay B , Antonio M , Hossain MA , Oundo J , Tamboura B , Mai V , Astrovskaya I , Corrada Bravo H , Rance R , Stares M , Levine MM , Panchalingam S , Kotloff K , Ikumapayi UN , Ebruke C , Adeyemi M , Ahmed D , Ahmed F , Alam MT , Amin R , Siddiqui S , Ochieng JB , Ouma E , Juma J , Mailu E , Omore R , Morris JG , Breiman RF , Saha D , Parkhill J , Nataro JP , Stine OC .
Genome Biol 2014 15 (6) R76
Histo-Blood Group Antigen Null Phenotypes Associated With a Decreased Risk of Clinical Rotavirus Vaccine Failure Among Children <2 Years of Age Participating in the Vaccine Impact on Diarrhea in Africa (VIDA) Study in Kenya, Mali, and the Gambia
Schwartz LM , Oshinsky J , Reymann M , Esona MD , Bowen MD , Jahangir Hossain M , Zaman SMA , Jones JCM , Antonio M , Badji H , Sarwar G , Sow SO , Sanogo D , Keita AM , Tamboura B , Traoré A , Onwuchekwa U , Omore R , Verani JR , Awuor AO , Ochieng JB , Juma J , Ogwel B , Parashar UD , Tate JE , Kasumba IN , Tennant SM , Neuzil KM , Rowhani-Rahbar A , Elizabeth Halloran M , Atmar RL , Pasetti MF , Kotloff KL .
Clin Infect Dis 2023 76 S153-s161 type
Clinical and epidemiologic features of cryptosporidium-associated diarrheal disease among young children living in Sub-Saharan Africa: The Vaccine Impact on Diarrhea in Africa (VIDA) Study
Hossain MJ , Powell H , Sow SO , Omore R , Roose A , Jones JCM , Zaman SMA , Badji H , Sarwar G , Kasumba IN , Onwuchekwa U , Doh S , Awuor AO , Ochieng JB , Verani JR , Liu J , Tennant SM , Nasrin D , Jamka LP , Liang Y , Howie SRC , Antonio M , Houpt ER , Kotloff KL .
Clin Infect Dis 2023 76 S97-s105
Prevalence, clinical severity, and seasonality of adenovirus 40/41, astrovirus, sapovirus, and rotavirus among young children with moderate-to-severe diarrhea: Results from the Vaccine Impact on Diarrhea in Africa (VIDA) Study
Keita AM , Doh S , Sow SO , Powell H , Omore R , Jahangir Hossain M , Ogwel B , Ochieng JB , Jones JCM , Zaman SMA , Awuor AO , Juma J , Nasrin D , Liu J , Traoré A , Onwuchekwa U , Badji H , Sarwar G , Antonio M , Houpt ER , Tennant SM , Kasumba IN , Jamka LP , Roose A , Platts-Mills JA , Verani JR , Tate JE , Parashar UD , Neuzil KM , Kotloff KL .
Clin Infect Dis 2023 76 S123-s131
Epidemiology of enteroaggregative, enteropathogenic, and shiga toxin-producing escherichia coli among children aged <5 years in 3 countries in Africa, 2015-2018: Vaccine Impact on Diarrhea in Africa (VIDA) Study
Ochieng JB , Powell H , Sugerman CE , Omore R , Ogwel B , Juma J , Awuor AO , Sow SO , Sanogo D , Onwuchekwa U , Keita AM , Traoré A , Badji H , Hossain MJ , Jones JCM , Kasumba IN , Nasrin D , Roose A , Liang Y , Jamka LP , Antonio M , Platts-Mills JA , Liu J , Houpt ER , Mintz ED , Hunsperger E , Onyango CO , Strockbine N , Widdowson MA , Verani JR , Tennant SM , Kotloff KL .
Clin Infect Dis 2023 76 S77-s86
Norovirus disease among children <5 years in 3 Sub-Saharan African countries: Findings from the Vaccine Impact on Diarrhea in Africa (VIDA) Study, 2015-2018
Omore R , Powell H , Sow SO , Jahangir Hossain M , Ogwel B , Doh S , Ochieng JB , Jones JCM , Zaman SMA , Awuor AO , Juma J , Kasumba IN , Roose A , Jamka LP , Nasrin D , Liu J , Keita AM , Traoré A , Onwuchekwa U , Badji H , Sarwar G , Antonio M , Sugerman CE , Mintz ED , Houpt ER , Verani JR , Widdowson MA , Tennant SM , Platts-Mills JA , Tate JE , Parashar UD , Kotloff KL .
Clin Infect Dis 2023 76 S114-s122
Characteristics of Salmonella recovered from stools of children enrolled in the Global Enteric Multicenter Study.
Kasumba IN , Pulford CV , Perez-Sepulveda BM , Sen S , Sayed N , Permala-Booth J , Livio S , Heavens D , Low R , Hall N , Roose A , Powell H , Farag T , Panchalingham S , Berkeley L , Nasrin D , Blackwelder WC , Wu Y , Tamboura B , Sanogo D , Onwuchekwa U , Sow SO , Ochieng JB , Omore R , Oundo JO , Breiman RF , Mintz ED , O'Reilly CE , Antonio M , Saha D , Hossain MJ , Mandomando I , Bassat Q , Alonso PL , Ramamurthy T , Sur D , Qureshi S , Zaidi AKM , Hossain A , Faruque ASG , Nataro JP , Kotloff KL , Levine MM , Hinton JCD , Tennant SM .
Clin Infect Dis 2021 73 (4) 631-641 type
Factors associated with typical enteropathogenic Escherichia coli infection among children <5 years old with moderate-to-severe diarrhoea in rural western Kenya, 2008-2012.
Fagerli K , Omore R , Kim S , Ochieng JB , Ayers TL , Juma J , Farag TH , Nasrin D , Panchalingam S , Robins-Browne RM , Nataro JP , Kotloff KL , Levine MM , Oundo J , Parsons MB , Laserson KF , Mintz ED , Breiman RF , O'Reilly CE .
Epidemiol Infect 2020 148 1-37
The Clinical Presentation of Culture-positive and Culture-negative, Quantitative Polymerase Chain Reaction (qPCR)-Attributable Shigellosis in the Global Enteric Multicenter Study and Derivation of a Shigella Severity Score: Implications for Pediatric Shigella Vaccine Trials.
Pavlinac PB , Platts-Mills JA , Tickell KD , Liu J , Juma J , Kabir F , Nkeze J , Okoi C , Operario DJ , Uddin MJ , Ahmed S , Alonso PL , Antonio M , Becker SM , Breiman RF , Faruque ASG , Fields B , Gratz J , Haque R , Hossain A , Hossain MJ , Jarju S , Qamar F , Iqbal NT , Kwambana B , Mandomando I , McMurry TL , Ochieng C , Ochieng JB , Ochieng M , Onyango C , Panchalingam S , Kalam A , Aziz F , Qureshi S , Ramamurthy T , Roberts JH , Saha D , Sow SO , Stroup SE , Sur D , Tamboura B , Taniuchi M , Tennant SM , Roose A , Toema D , Wu Y , Zaidi A , Nataro JP , Levine MM , Houpt ER , Kotloff KL .
Clin Infect Dis 2020 73 (3) e569-e579
Investigating the meat pathway as a source of human nontyphoidal Salmonella bloodstream infections and diarrhea in East Africa.
Crump JA , Thomas KM , Benschop J , Knox MA , Wilkinson DA , Midwinter AC , Munyua P , Ochieng JB , Bigogo GM , Verani JR , Widdowson MA , Prinsen G , Cleaveland S , Karimuribo ED , Kazwala RR , Mmbaga BT , Swai ES , French NP , Zadoks RN .
Clin Infect Dis 2020 73 (7) e1570-e1578
Rotavirus group A genotype circulation patterns across Kenya before and after nationwide vaccine introduction, 2010-2018.
Mwanga MJ , Owor BE , Ochieng JB , Ngama MH , Ogwel B , Onyango C , Juma J , Njeru R , Gicheru E , Otieno GP , Khagayi S , Agoti CN , Bigogo GM , Omore R , Addo OY , Mapaseka S , Tate JE , Parashar UD , Hunsperger E , Verani JR , Breiman RF , Nokes DJ .
BMC Infect Dis 2020 20 (1) 504 type
Colonization factors among enterotoxigenic Escherichia coli isolates from children with moderate-to-severe diarrhea and from matched controls in the Global Enteric Multicenter Study (GEMS).
Vidal RM , Muhsen K , Tennant SM , Svennerholm AM , Sow SO , Sur D , Zaidi AKM , Faruque ASG , Saha D , Adegbola R , Hossain MJ , Alonso PL , Breiman RF , Bassat Q , Tamboura B , Sanogo D , Onwuchekwa U , Manna B , Ramamurthy T , Kanungo S , Ahmed S , Qureshi S , Quadri F , Hossain A , Das SK , Antonio M , Mandomando I , Nhampossa T , Acacio S , Omore R , Ochieng JB , Oundo JO , Mintz ED , O'Reilly CE , Berkeley LY , Livio S , Panchalingam S , Nasrin D , Farag TH , Wu Y , Sommerfelt H , Robins-Browne RM , Del Canto F , Hazen TH , Rasko DA , Kotloff KL , Nataro JP , Levine MM .
PLoS Negl Trop Dis 2019 13 (1) e0007037
Multi-drug resistant non-typhoidal Salmonella associated with invasive disease in western Kenya.
Akullian A , Montgomery JM , John-Stewart G , Miller SI , Hayden HS , Radey MC , Hager KR , Verani JR , Ochieng JB , Juma J , Katieno J , Fields B , Bigogo G , Audi A , Walson J .
PLoS Negl Trop Dis 2018 12 (1) e0006156 type
Use of quantitative molecular diagnostic methods to identify causes of diarrhoea in children: a reanalysis of the GEMS case-control study.
Liu J , Platts-Mills JA , Juma J , Kabir F , Nkeze J , Okoi C , Operario DJ , Uddin J , Ahmed S , Alonso PL , Antonio M , Becker SM , Blackwelder WC , Breiman RF , Faruque AS , Fields B , Gratz J , Haque R , Hossain A , Hossain MJ , Jarju S , Qamar F , Iqbal NT , Kwambana B , Mandomando I , McMurry TL , Ochieng C , Ochieng JB , Ochieng M , Onyango C , Panchalingam S , Kalam A , Aziz F , Qureshi S , Ramamurthy T , Roberts JH , Saha D , Sow SO , Stroup SE , Sur D , Tamboura B , Taniuchi M , Tennant SM , Toema D , Wu Y , Zaidi A , Nataro JP , Kotloff KL , Levine MM , Houpt ER .
Lancet 2016 388 (10051) 1291-301
Bacterial factors associated with lethal outcome of enteropathogenic Escherichia coli infection: genomic case-control studies
Donnenberg MS , Hazen TH , Farag TH , Panchalingam S , Antonio M , Hossain A , Mandomando I , Ochieng JB , Ramamurthy T , Tamboura B , Zaidi A , Levine MM , Kotloff K , Rasko DA , Nataro JP .
PLoS Negl Trop Dis 2015 9 (5) e0003791
Defining the phylogenomics of Shigella species: a pathway to diagnostics.
Sahl JW , Morris CR , Emberger J , Fraser CM , Ochieng JB , Juma J , Fields B , Breiman RF , Gilmour M , Nataro JP , Rasko DA .
J Clin Microbiol 2015 53 (3) 951-60
Draft Genome Sequences of Nine Enteropathogenic Escherichia coli Strains from Kenya.
Hazen TH , Humphrys MS , Ochieng JB , Parsons M , Bopp CA , O'Reilly CE , Mintz E , Rasko DA .
Genome Announc 2014 2 (3)
Survey of culture, golden gate assay, universal biosensor assay, and 16S rRNA gene sequencing as alternative methods of bacterial pathogen detection
Lindsay B , Pop M , Antonio M , Walker AW , Mai V , Ahmed D , Oundo J , Tamboura B , Panchalingam S , Levine MM , Kotloff K , Li S , Magder LS , Paulson JN , Liu B , Ikumapayi U , Ebruke C , Dione M , Adeyemi M , Rance R , Stares MD , Ukhanova M , Barnes B , Lewis I , Ahmed F , Alam MT , Amin R , Siddiqui S , Ochieng JB , Ouma E , Juma J , Mailu E , Omore R , O'Reilly CE , Hannis J , Manalili S , Deleon J , Yasuda I , Blyn L , Ranken R , Li F , Housley R , Ecker DJ , Hossain MA , Breiman RF , Morris JG , McDaniel TK , Parkhill J , Saha D , Sampath R , Stine OC , Nataro JP .
J Clin Microbiol 2013 51 (10) 3263-9
Quantitative PCR for detection of Shigella improves ascertainment of Shigella burden in children with moderate-to-severe diarrhea in low-income countries
Lindsay B , Ochieng JB , Ikumapayi UN , Toure A , Ahmed D , Li S , Panchalingam S , Levine MM , Kotloff K , Rasko DA , Morris CR , Juma J , Fields BS , Dione M , Malle D , Becker SM , Houpt ER , Nataro JP , Sommerfelt H , Pop M , Oundo J , Antonio M , Hossain A , Tamboura B , Stine OC .
J Clin Microbiol 2013 51 (6) 1740-6
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