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CDC-Authored Genomics and Precision Health Publications Database|Home|Public Health Genomics and Precision Health Knowledge Base (PHGKB)

CDC-Authored Genomics and Precision Health Publications Database


Last data update: Oct 07, 2024. (Total: 6342 publications)
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Records 1-30 (of 34 Records)
Query Trace: Metagenomics[original query]
Metagenomic detection of bacterial zoonotic pathogens among febrile patients, Tanzania, 2007-2009
Rolfe RJ , Sheldon SW , Kingry LC , Petersen JM , Maro VP , Kinabo GD , Saganda W , Maze MJ , Halliday JEB , Nicholson WL , Galloway RL , Rubach MP , Crump JA .
Emerg Infect Dis 2024 30 (8) 1599-1608 type
Surveillance for emerging and reemerging pathogens using pathogen agnostic metagenomic sequencing in the United States: A critical role for federal government agencies
Downie DL , Rao P , David-Ferdon C , Courtney S , Lee JS , Quiner C , MacDonald PDM , Barnes K , Fisher S , Andreadis JL , Chaitram J , Mauldin MR , Salerno RM , Schiffer J , Gundlapalli AV .
Health Secur 2024 type
A diverse group of small circular ssDNA viral genomes in human and non-human primate stools.
Ng TF , Zhang W , Sachsenröder J , Kondov NO , da Costa AC , Vega E , Holtz LR , Wu G , Wang D , Stine CO , Antonio M , Mulvaney US , Muench MO , Deng X , Ambert-Balay K , Pothier P , Vinjé J , Delwart E .
Virus Evol 2015 1 (1) vev017
Simultaneous targeted amplicon deep sequencing and library preparation for a time and cost-effective universal parasite diagnostic sequencing approach
Gondard M , Lane M , Barratt J , Talundzic E , Qvarnstrom Y .
Parasitol Res 2023 122 (12) 3243-3256 type
Detecting national human enteric disease outbreaks linked to animal contact in the United States of America.
Nichols M , Stevenson L , Koski L , Basler C , Wise M , Whitlock L , Francois Watkins L , Friedman CR , Chen J , Tagg K , Joseph L , Caidi H , Patel K , Tolar B , Hise K , Classon A , Ceric O , Reimschuessel R , Williams IT .
Rev Sci Tech 2020 39 (2) 471-480 type
Four principles to establish a universal virus taxonomy.
Simmonds P , Adriaenssens EM , Zerbini FM , Abrescia NGA , Aiewsakun P , Alfenas-Zerbini P , Bao Y , Barylski J , Drosten C , Duffy S , Duprex WP , Dutilh BE , Elena SF , García ML , Junglen S , Katzourakis A , Koonin EV , Krupovic M , Kuhn JH , Lambert AJ , Lefkowitz EJ , Łobocka M , Lood C , Mahony J , Meier-Kolthoff JP , Mushegian AR , Oksanen HM , Poranen MM , Reyes-Muñoz A , Robertson DL , Roux S , Rubino L , Sabanadzovic S , Siddell S , Skern T , Smith DB , Sullivan MB , Suzuki N , Turner D , Van Doorslaer K , Vandamme AM , Varsani A , Vasilakis N .
PLoS Biol 2023 21 (2) e3001922 type
An improved workflow for accurate and robust healthcare environmental surveillance using metagenomics.
Shen J , McFarland AG , Blaustein RA , Rose LJ , Perry-Dow KA , Moghadam AA , Hayden MK , Young VB , Hartmann EM .
Microbiome 2022 10 (1) 206 type
What Can We Learn about the Bias of Microbiome Studies from Analyzing Data from Mock Communities?
Li M , Tyx RE , Rivera AJ , Zhao N , Satten GA .
Genes (Basel) 2022 13 (10)
ROCker Models for Reliable Detection and Typing of Short-Read Sequences Carrying β-Lactamase Genes.
Zhang SY , Suttner B , Rodriguez RLm , Orellana LH , Conrad RE , Liu F , Rowell JL , Webb HE , Williams-Newkirk AJ , Huang A , Konstantinidis KT .
mSystems 2022 7 (3) e0128121 type
Litter Commensal Bacteria Can Limit the Horizontal Gene Transfer of Antimicrobial Resistance to Salmonella in Chickens.
Oladeinde A , Abdo Z , Zwirzitz B , Woyda R , Lakin SM , Press MO , Cox NA , Thomas JCth , Looft T , Rothrock MJJr , Zock G , Plumblee Lawrence J , Cudnik D , Ritz C , Aggrey SE , Liachko I , Grove JR , Wiersma C .
Appl Environ Microbiol 2022 88 (9) e0251721 type
Clinical and Molecular Epidemiology of Crimean-Congo Hemorrhagic Fever in Humans in Uganda, 2013-2019.
Balinandi S , Whitmer S , Mulei S , Nyakarahuka L , Tumusiime A , Kyondo J , Baluku J , Mutyaba J , Mugisha L , Malmberg M , Lutwama J , Shoemaker T , Klena J .
Am J Trop Med Hyg 2021 106 (1) 88-98 type
Microbial signatures in the lower airways of mechanically ventilated COVID-19 patients associated with poor clinical outcome.
Sulaiman I , Chung M , Angel L , Tsay JJ , Wu BG , Yeung ST , Krolikowski K , Li Y , Duerr R , Schluger R , Thannickal SA , Koide A , Rafeq S , Barnett C , Postelnicu R , Wang C , Banakis S , Pérez-Pérez L , Shen G , Jour G , Meyn P , Carpenito J , Liu X , Ji K , Collazo D , Labarbiera A , Amoroso N , Brosnahan S , Mukherjee V , Kaufman D , Bakker J , Lubinsky A , Pradhan D , Sterman DH , Weiden M , Heguy A , Evans L , Uyeki TM , Clemente JC , de Wit E , Schmidt AM , Shopsin B , Desvignes L , Wang C , Li H , Zhang B , Forst CV , Koide S , Stapleford KA , Khanna KM , Ghedin E , Segal LN .
Nat Microbiol 2021 6 (10) 1245-1258
Horizontal Gene Transfer Is the Main Driver of Antimicrobial Resistance in Broiler Chicks Infected with Salmonella enterica Serovar Heidelberg.
Oladeinde A , Abdo Z , Press MO , Cook K , Cox NA , Zwirzitz B , Woyda R , Lakin SM , Thomas JC4th , Looft T , Cosby DE , Hinton AJr , Guard J , Line E , Rothrock MJ , Berrang ME , Herrington K , Zock G , Plumblee Lawrence J , Cudnik D , House S , Ingram K , Lariscy L , Wagner M , Aggrey SE , Chai L , Ritz C .
mSystems 2021 6 (4) e0072921 type
Comparative Genomic and Transcriptomic Analysis of Naegleria fowleri Clinical and Environmental Isolates.
Joseph SJ , Park S , Kelley A , Roy S , Cope JR , Ali IKM .
mSphere 2021 6 (4) e0063721 type
Microbiology of the American Smokeless Tobacco.
Rivera AJ , Tyx RE .
Appl Microbiol Biotechnol 2021 105 (12) 4843-4853 type
Detection of Tick-borne Bacteria from Whole Blood Using 16S Ribosomal RNA Gene PCR Followed by Next-Generation Sequencing.
Rodino KG , Wolf MJ , Sheldon S , Kingry LC , Petersen JM , Patel R , Pritt BS .
J Clin Microbiol 2021 59 (5) type
Metagenomic sequencing generates the whole genomes of porcine rotavirus A, C, and H from the United States.
Hull JJA , Qi M , Montmayeur AM , Kumar D , Velasquez DE , Moon SS , Magaña LC , Betrapally N , Ng TFF , Jiang B , Marthaler D .
PLoS One 2020 15 (12) e0244498
Targeted metagenomics for clinical detection and discovery of bacterial tickborne pathogens
Kingry L , Sheldon S , Oatman S , Pritt B , Anacker M , Bjork J , Neitzel D , Strain A , Berry J , Sloan L , Respicio-Kingry L , Dietrich E , Bloch K , Moncayo A , Srinivasamoorthy G , Hu B , Hinckley A , Mead P , Kugeler K , Petersen J .
J Clin Microbiol 2020 58 (11) type
STROBE-metagenomics: a STROBE extension statement to guide the reporting of metagenomics studies.
Bharucha T , Oeser C , Balloux F , Brown JR , Carbo EC , Charlett A , Chiu CY , Claas ECJ , de Goffau MC , de Vries JJC , Eloit M , Hopkins S , Huggett JF , MacCannell D , Morfopoulou S , Nath A , O'Sullivan DM , Reoma LB , Shaw LP , Sidorov I , Simner PJ , Van Tan L , Thomson EC , van Dorp L , Wilson MR , Breuer J , Field N .
Lancet Infect Dis 2020 20 (10) e251-e260 type
Viruses in the Built Environment (VIBE) meeting report.
Prussin AJ 2nd , Belser JA , Bischoff W , Kelley ST , Lin K , Lindsley WG , Nshimyimana JP , Schuit M , Wu Z , Bibby K , Marr LC .
Microbiome 2020 8 (1) 1
Pathogen surveillance in the informal settlement, Kibera, Kenya, using a metagenomics approach.
Hendriksen RS , Lukjancenko O , Munk P , Hjelmso MH , Verani JR , Ng'eno E , Bigogo G , Kiplangat S , Oumar T , Bergmark L , Roder T , Neatherlin JC , Clayton O , Hald T , Karlsmose S , Pamp SJ , Fields B , Montgomery JM , Aarestrup FM .
PLoS One 2019 14 (10) e0222531 type
Molecular Analysis of the Complete Genome of a Simian Foamy Virus Infecting Hylobates pileatus (pileated gibbon) Reveals Ancient Co-Evolution with Lesser Apes.
Shankar A , Sibley SD , Goldberg TL , Switzer WM .
Viruses 2019 11 (7) type
The use of next generation sequencing for improving food safety: Translation into practice.
Jagadeesan B , Gerner-Smidt P , Allard MW , Leuillet S , Winkler A , Xiao Y , Chaffron S , Van Der Vossen J , Tang S , Katase M , McClure P , Kimura B , Ching Chai L , Chapman J , Grant K .
Food Microbiol 2019 79 96-115 type
Fast estimation of genetic relatedness between members of heterogeneous populations of closely related genomic variants.
Tsyvina V , Campo DS , Sims S , Zelikovsky A , Khudyakov Y , Skums P .
BMC Bioinformatics 2018 19 360 type
Genetic diversity of human sapovirus across the Americas.
Diez-Valcarce M , Castro CJ , Marine RL , Halasa N , Mayta H , Saito M , Tsaknaridis L , Pan CY , Bucardo F , Becker-Dreps S , Lopez MR , Magana LC , Ng TFF , Vinje J .
J Clin Virol 2018 104 65-72 type
Genome Sequence of Coxiella-Like Endosymbiont Strain CLE-RmD, a Bacterial Agent in the Cattle Tick (Rhipicephalus microplus) Deutsch Strain.
Ramaiah A , Dasch GA .
Genome Announc 2018 6 (13)
Next-Generation Sequencing Technologies and their Application to the Study and Control of Bacterial Infections.
Besser J , Carleton HA , Gerner-Smidt P , Lindsey RL , Trees E .
Clin Microbiol Infect 2017 24 (4) 335-341 type
Salmonella epidemiology: A whirlwind of change.
Besser JM .
Food Microbiol 2017 71 55-59 type
Viral Pathogen Detection by Metagenomics and Pan Viral Group PCR in Children with Pneumonia Lacking Identifiable Etiology.
Schlaberg R , Queen K , Simmon K , Tardif K , Stockmann C , Flygare S , Kennedy B , Voelkerding K , Bramley A , Zhang J , Eilbeck K , Yandell M , Jain S , Pavia AT , Tong S , Ampofo K .
J Infect Dis 2017 215 (9) 1407-1415
Genomic Characterization of Three Melon Necrotic Spot Viruses Detected in Human Stool Specimens.
Marine R , Castro C , Magana L , Ng TF , Aswath K , Collins N , Park GW , Vinje J , Oberste MS .
Genome Announc 2017 5 (11)
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