CDC-Authored Genomics and Precision Health Publications Database

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Last data update: Jan 21, 2025. (Total: 6495 publications)

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Records 1-20 (of 20 Records)

Query Trace: Mathis A[original query]
Genomic cluster formation among invasive group A streptococcal infections in the USA: a whole-genome sequencing and population-based surveillance study Li Y , Rivers J , Mathis S , Li Z , Chochua S , Metcalf BJ , Beall B , McGee L . Lancet Microbe 2024 100927
Genomic epidemiology of extrapulmonary nontuberculous mycobacteria isolates at emerging infections program sites - United States, 2019-2020 Masters TL , Toney NC , Ewing TO , McAllister G , Mathis MH , Grigg C , Magill SS , Jackson KA , Byram R , See I , Salfinger M , Barter D , Johnston H , Lynfield R , Vagnone PS , Tourdot L , Anderson BJ , Dumyati G , Pierce R , Lutgring JD , Gargis A , McKay S . J Infect Dis 2024
Implications of measles inclusion by commercial syndromic polymerase chain reaction panels - United States, May 2022-April 2023 Thomas CM , Hartley A , Schmitz A , Reid HD , Sullivan S , Huebner E , Robinson M , Mathis A , Fill MA , Levinson KJ , Jones TF , Schaffner W , Newhouse CN , Dunn JR . MMWR Morb Mortal Wkly Rep 2024 73 (12) 260-264
A novel invasive Streptococcus pyogenes variant sublineage derived through recombinational replacement of the emm12 genomic region Unoarumhi Y , Davis ML , Rowe LA , Mathis S , Li Z , Chochua S , Li Y , McGee L , Metcalf BJ , Lee JS , Beall B . Sci Rep 2023 13 (1) 21510
Expansion of invasive group A streptococcus M1(uk) lineage in active bacterial core surveillance, United States, 2019‒2021 Li Y , Rivers J , Mathis S , Li Z , Chochua S , Metcalf BJ , Beall B , Onukwube J , Gregory CJ , McGee L . Emerg Infect Dis 2023 29 (10) 2116-2120
Measles virus transmission patterns and public health responses during Operation Allies Welcome: a descriptive epidemiological study Masters NB , Beck AS , Mathis AD , Leung J , Raines K , Paul P , Stanley SE , Weg AL , Pieracci EG , Gearhart S , Jumabaeva M , Bankamp B , Rota PA , Sugerman DE , Gastañaduy PA . Lancet Public Health 2023 8 (8) e618-e628
Evaluation of an open forecasting challenge to assess skill of West Nile virus neuroinvasive disease prediction. Holcomb KM , Mathis S , Staples JE , Fischer M , Barker CM , Beard CB , Nett RJ , Keyel AC , Marcantonio M , Childs ML , Gorris ME , Rochlin I , Hamins-Puértolas M , Ray EL , Uelmen JA , DeFelice N , Freedman AS , Hollingsworth BD , Das P , Osthus D , Humphreys JM , Nova N , Mordecai EA , Cohnstaedt LW , Kirk D , Kramer LD , Harris MJ , Kain MP , Reed EMX , Johansson MA . Parasit Vectors 2023 16 (1) 11
Fecal shedding of two novel live attenuated oral poliovirus type 2 vaccines candidates by healthy bOPV/IPV-vaccinated infants: two randomized clinical trials. Gast C , Bandyopadhyay AS , Sáez-Llorens X , De Leon T , DeAntonio R , Jimeno J , Aguirre G , McDuffie LM , Coffee E , Mathis DL , Oberste MS , Weldon WC , Konopka-Anstadt JL , Modlin J , Bachtiar NS , Fix A , Konz J , Clemens R , Costa Clemens SA , Rüttimann R . J Infect Dis 2022 226 (5) 852-861
Invasive Group A Streptococcal Penicillin Binding Protein 2× Variants Associated with Reduced Susceptibility to β-Lactam Antibiotics in the United States, 2015-2021. Chochua S , Metcalf B , Li Z , Mathis S , Tran T , Rivers J , Fleming-Dutra KE , Li Y , McGee L , Beall B . Antimicrob Agents Chemother 2022 66 (9) e0080222
Continued Increase of Erythromycin- and Clindamycin-Nonsusceptibility among Invasive Group A Streptococci Driven by Genomic Clusters, USA, 2018-2019. Li Y , Rivers J , Mathis S , Li Z , McGee L , Chochua S , Metcalf BJ , Fleming-Dutra KE , Nanduri SA , Beall B . Clin Infect Dis 2022 76 (3) e1266-e1269
Genomic Insights on Variation Underlying Capsule Expression in Meningococcal Carriage Isolates From University Students, United States, 2015-2016. Whaley MJ , Vuong JT , Topaz N , Chang HY , Thomas JD , Jenkins LT , Hu F , Schmink S , Steward-Clark E , Mathis M , Rodriguez-Rivera LD , Retchless AC , Joseph SJ , Chen A , Acosta AM , McNamara L , Soeters HM , Mbaeyi S , Marjuki H , Wang X . Front Microbiol 2022 13 815044
Genomic Characterization of Group A Streptococci Causing Pharyngitis and Invasive Disease in Colorado, USA, June 2016 - April 2017. Li Y , Dominguez S , Nanduri SA , Rivers J , Mathis S , Li Z , McGee L , Chochua S , Metcalf BJ , Van Beneden CA , Beall B , Miller L . J Infect Dis 2021 225 (10) 1841-1851
Genomic Surveillance of Streptococcus pyogenes Strains Causing Invasive Disease, United States, 2016-2017. Li Y , Rivers J , Mathis S , Li Z , Velusamy S , Nanduri SA , Van Beneden CA , Snippes-Vagnone P , Lynfield R , McGee L , Chochua S , Metcalf BJ , Beall B . Front Microbiol 2020 11 1547
Multistate, population-based distributions of candidate vaccine targets, clonal complexes, and resistance features of invasive Group B Streptococci within the US: 2015-2017. McGee L , Chochua S , Li Z , Mathis S , Rivers J , Metcalf B , Ryan A , Alden N , Farley MM , Harrison LH , Snippes Vagnone P , Lynfield R , Smelser C , Muse A , Thomas AR , Schrag S , Beall BW . Clin Infect Dis 2020 72 (6) 1004-1013
Pathogen surveillance in the informal settlement, Kibera, Kenya, using a metagenomics approach. Hendriksen RS , Lukjancenko O , Munk P , Hjelmso MH , Verani JR , Ng'eno E , Bigogo G , Kiplangat S , Oumar T , Bergmark L , Roder T , Neatherlin JC , Clayton O , Hald T , Karlsmose S , Pamp SJ , Fields B , Montgomery JM , Aarestrup FM . PLoS One 2019 14 (10) e0222531
Emergent Invasive Group A Streptococcus dysgalactiae subsp. Equisimilis, United States, 2015-2018. Chochua S , Rivers J , Mathis S , Li Z , Velusamy S , McGee L , Van Beneden C , Li Y , Metcalf BJ , Beall B . Emerg Infect Dis 2019 25 (8) 1543-1547
Screening and genomic characterization of filamentous hemagglutinin-deficient Bordetella pertussis. Weigand MR , Pawloski LC , Peng Y , Ju H , Burroughs M , Cassiday PK , Davis JK , DuVall M , Johnson T , Juieng P , Knipe K , Loparev VN , Mathis MH , Rowe LA , Sheth M , Williams MM , Tondella ML . Infect Immun 2018 86 (4)
Population and Whole Genome Sequence Based Characterization of Invasive Group A Streptococci Recovered in the United States during 2015. Chochua S , Metcalf BJ , Li Z , Rivers J , Mathis S , Jackson D , Gertz RE Jr , Srinivasan V , Lynfield R , Van Beneden C , McGee L , Beall B . mBio 2017 8 (5)
Short-read whole genome sequencing for determination of antimicrobial resistance mechanisms and capsular serotypes of current invasive Streptococcus agalactiae recovered in the United States. Metcalf BJ , Chochua S , Gertz RE Jr , Hawkins PA , Ricaldi J , Li Z , Walker H , Tran T , Rivers J , Mathis S , Jackson D , Glennen A , Lynfield R , McGee L , Beall B . Clin Microbiol Infect 2017 23 (8) 574 e7-574 e14
The History of Bordetella pertussis Genome Evolution Includes Structural Rearrangement. Weigand MR , Peng Y , Loparev V , Batra D , Bowden KE , Burroughs M , Cassiday PK , Davis JK , Johnson T , Juieng P , Knipe K , Mathis MH , Pruitt AM , Rowe L , Sheth M , Tondella ML , Williams MM . J Bacteriol 2017 199 (8)