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Public Health Genomics and Precision Health Knowledge Base (v10.0)
PHGKB
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CDC-Authored Genomics and Precision Health Publications Database|Home|Public Health Genomics and Precision Health Knowledge Base (PHGKB)
CDC-Authored Genomics and Precision Health Publications Database
Last data update: Apr 14, 2025
. (Total: 6636 publications)
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Year
Journal
Records 1-29 (of 29 Records)
Query Trace:
Lindsey RL[original query]
Attribution of Salmonella enterica to Food Sources by Using Whole-Genome Sequencing Data
Rose EB
,
Steele MK
,
Tolar B
,
Pettengill J , Batz M , Bazaco M , Tameru B ,
Cui Z
,
Lindsey RL
,
Simmons M ,
Chen J
,
Posny D ,
Carleton H
,
Bruce BB
.
Emerg Infect Dis 2025 31 (4) 783-790
Kalamari: a representative set of genomes of public health concern
Katz LS
,
Griswold T
,
Lindsey RL
,
Lauer AC
,
Im MS
,
Williams G
,
Halpin JL
,
Gómez GA
,
Kucerova Z
,
Morrison S
,
Page A , Den Bakker HC ,
Carleton HA
.
Microbiol Resour Announc 2025 e0096324
Conditional expression of flagellar motility, curli fimbriae, and biofilms in Shiga toxin- producing Escherichia albertii
Carter MQ , Carychao D ,
Lindsey RL
.
Front Microbiol 2024 15 1456637
Genetic diversity in Salmonella enterica in outbreaks of foodborne and zoonotic origin in the USA in 2006-2017
Trees E ,
Carleton HA
,
Folster JP
,
Gieraltowski L
,
Hise K
,
Leeper M
,
Nguyen TA
,
Poates A ,
Sabol A
,
Tagg KA
,
Tolar B
,
Vasser M
,
Webb HE
,
Wise M
,
Lindsey RL
.
Microorganisms 2024 12 (8)
Rapid identification of enteric bacteria from whole genome sequences using average nucleotide identity metrics
Lindsey RL
,
Gladney LM
,
Huang AD
,
Griswold T
,
Katz LS
,
Dinsmore BA
,
Im MS
,
Kucerova Z
,
Smith PA
,
Lane C
,
Carleton HA
.
Front Microbiol 2023 14 1225207
Genomic and phenotypic characterization of shiga toxin-producing Escherichia albertii strains isolated from wild birds in a major agricultural region in California
Carter MQ , Quiñones B , He X , Pham A , Carychao D , Cooley MB , Lo CC , Chain PSG ,
Lindsey RL
,
Bono JL .
Microorganisms 2023 11 (11)
Identification and characterization of ten Escherichia coli strains encoding novel shiga toxin 2 subtypes, Stx2n as well as Stx2j, Stx2m, and Stx2o, in the United States
Lindsey RL
,
Prasad A , Feldgarden M , Gonzalez-Escalona N ,
Kapsak C
,
Klimke W , Melton-Celsa A ,
Smith P
,
Souvorov A , Truong J , Scheutz F .
Microorganisms 2023 11 (10)
Longitudinal surveillance and comparative characterization of Escherichia albertii in wild raccoons in the United States.
Hinenoya A , Wang H , Patrick EM , Zeng X , Cao L , Li XP ,
Lindsey RL
,
Gillespie B , He Q , Yamasaki S , Lin J .
Microbiol Res 2022 262 127109
Use of Large-Scale Genomics to Identify the Role of Animals and Foods as Potential Sources of Extraintestinal Pathogenic Escherichia coli That Cause Human Illness.
Harrison L , Tyson GH , Strain E ,
Lindsey RL
,
Strockbine N
,
Ceric O , Fortenberry GZ , Harris B , Shaw S , Tillman G , Zhao S , Dessai U .
Foods 2022 11 (13)
The Use of Whole-Genome Sequencing by the Federal Interagency Collaboration for Genomics for Food and Feed Safety in the United States.
Stevens EL ,
Carleton HA
,
Beal J , Tillman GE ,
Lindsey RL
,
Lauer AC
,
Pightling A , Jarvis KG , Ottesen A , Ramachandran P , Hintz L ,
Katz LS
,
Folster JP
,
Whichard JM
,
Trees E
,
Timme RE , McDermott P , Wolpert B , Bazaco M , Zhao S , Lindley S ,
Bruce BB
,
Griffin PM
,
Brown E , Allard M , Tallent S , Irvin K , Hoffmann M ,
Wise M
,
Tauxe R
,
Gerner-Smidt P
,
Simmons M , Kissler B , Defibaugh-Chavez S , Klimke W , Agarwala R , Lindsay J , Cook K , Austerman SR , Goldman D ,
McGarry S
,
Hale KR , Dessai U , Musser SM ,
Braden C
.
J Food Prot 2022 85 (5) 755-772
PacBio Genome Sequences of Eight Escherichia albertii Strains Isolated from Humans in the United States.
Lindsey RL
,
Rowe LA
,
Batra D
,
Smith P
,
Strockbine NA
.
Microbiol Resour Announc 2019 8 (9)
Conjugal Transfer, Whole Genome Sequencing, and Plasmid Analysis of Four mcr-1 -bearing Isolates from U.S. Patients.
Zhu W
,
Lawsin A
,
Lindsey RL
,
Batra D
,
Knipe K
,
Yoo BB
,
Perry KA
,
Rowe LA
,
Lonsway D
,
Waters MS
,
Rasheed JK
,
Halpin AL
.
Antimicrob Agents Chemother 2019 63 (4)
PacBio Genome Sequences of Escherichia coli Serotype O157:H7, Diffusely Adherent E. coli , and Salmonella enterica Strains, All Carrying Plasmids with an mcr-1 Resistance Gene.
Lindsey RL
,
Batra D
,
Smith P
,
Patel PN
,
Tagg KA ,
Garcia-Toledo L
,
Loparev VN
,
Juieng P
,
Sheth M
,
Joung YJ
,
Rowe LA
.
Microbiol Resour Announc 2018 7 (14)
Interlaboratory Evaluation of the U.S. Food and Drug Administration Escherichia coli Identification Microarray for Profiling Shiga Toxin-Producing Escherichia coli.
Patel IR , Gangiredla J , Lacher DW , Mammel MK , Bagi L , Baranzoni GM , Fratamico PM , Roberts EL , Deb Roy C ,
Lindsey RL
,
VStoneburg D
,
Martin H
,
Smith P
,
Strockbine NA
,
Elkins CA
,
Scheutz F , Feng PCH .
J Food Prot 2018 81 (8) 1275-1282
High-Quality Whole-Genome Sequences for 77 Shiga Toxin-Producing Escherichia coli Strains Generated with PacBio Sequencing.
Patel PN
,
Lindsey RL
,
Garcia-Toledo L
,
Rowe LA
,
Batra D
,
Whitley SW
,
Drapeau D
,
Stoneburg D
,
Martin H
,
Juieng P
,
Loparev VN
,
Strockbine N
.
Genome Announc 2018 6 (19)
High-Quality Whole-Genome Sequences for 59 Historical Shigella Strains Generated with PacBio Sequencing.
Kim J
,
Lindsey RL
,
Garcia-Toledo L
,
Loparev VN
,
Rowe LA
,
Batra D
,
Juieng P
,
Stoneburg D
,
Martin H
,
Knipe K
,
Smith P
,
Strockbine N
.
Genome Announc 2018 6 (15)
High-Quality Complete and Draft Genome Sequences for Three Escherichia spp. and Three Shigella spp. Generated with Pacific Biosciences and Illumina Sequencing and Optical Mapping.
Schroeder MR
,
Juieng P
,
Batra D
,
Knipe K
,
Rowe LA
,
Sheth M
,
Smith P
,
Garcia-Toledo L
,
Loparev VN
,
Lindsey RL
.
Genome Announc 2018 6 (1)
High-Quality Whole-Genome Sequences for 21 Enterotoxigenic Escherichia coli Strains Generated with PacBio Sequencing.
Smith P
,
Lindsey RL
,
Rowe LA
,
Batra D
,
Stripling D
,
Garcia-Toledo L
,
Drapeau D
,
Knipe K
,
Strockbine N
.
Genome Announc 2018 6 (2)
Next-Generation Sequencing Technologies and their Application to the Study and Control of Bacterial Infections.
Besser J
,
Carleton HA
,
Gerner-Smidt P
,
Lindsey RL
,
Trees E
.
Clin Microbiol Infect 2017 24 (4) 335-341
High-Quality Draft Genome Sequences for Four Drug-Resistant or Outbreak-Associated Shigella sonnei Strains Generated with PacBio Sequencing and Whole-Genome Maps.
Lindsey RL
,
Batra D
,
Rowe L
,
Loparev V N
,
Juieng P
,
Garcia-Toledo L
,
Bicknese A
,
Stripling D
,
Martin H
,
Chen J
,
Strockbine N
,
Trees E
.
Genome Announc 2017 5 (35)
Multiplex polymerase chain reaction for identification of Escherichia coli, Escherichia albertii and Escherichia fergusonii.
Lindsey RL
,
Garcia-Toledo L
,
Fasulo D ,
Gladney LM
,
Strockbine N
.
J Microbiol Methods 2017 140 1-4
High-Quality Genome Sequence of an Escherichia coli O157 Strain Carrying an mcr-1 Resistance Gene Isolated from a Patient in the United States.
Lindsey RL
,
Batra D
,
Rowe L
,
Loparev VN
,
Stripling D
,
Garcia-Toledo L
,
Knipe K
,
Juieng P
,
Sheth M
,
Martin H
,
Laufer Halpin A
.
Genome Announc 2017 5 (11)
High-Quality Draft Genome Sequences for Five Non-O157 Shiga Toxin-Producing Escherichia coli Strains Generated with PacBio Sequencing and Optical Maps.
Lindsey RL
,
Rowe L
,
Garcia-Toledo L
,
Loparev V
,
Knipe K
,
Stripling D
,
Martin H
,
Trees E
,
Juieng P
,
Batra D
,
Strockbine N
.
Genome Announc 2016 4 (3)
Implementation of Whole Genome Sequencing (WGS) for Identification and Characterization of Shiga Toxin-Producing Escherichia coli (STEC) in the United States.
Lindsey RL
,
Pouseele H , Chen JC ,
Strockbine NA
,
Carleton HA
.
Front Microbiol 2016 7 766
Complete Genome Sequences of Two Shiga Toxin-Producing Escherichia coli Strains from Serotypes O119:H4 and O165:H25.
Lindsey RL
,
Knipe K
,
Rowe L
,
Garcia-Toledo L
,
Loparev V
,
Juieng P
,
Trees E
,
Strockbine N
,
Stripling D
,
Gerner-Smidt P
.
Genome Announc 2015 3 (6)
Genome Sequence of a Urease-Positive Campylobacter lari Strain.
Meinersmann RJ , Bono JL , Lindsey RL , Genzlinger LL ,
Loparev VN
,
Oakley BB .
Genome Announc 2015 3 (5)
Evaluating the occurrence of Escherichia albertii in chicken carcass rinses by PCR, Vitek analysis, and sequencing of the rpoB gene.
Lindsey RL
,
Fedorka-Cray PJ , Abley M , Turpin JB , Meinersmann RJ .
Appl Environ Microbiol 2015 81 (5) 1727-34
Draft Whole-Genome Sequences of Nine Non-O157 Shiga Toxin-Producing Escherichia coli Strains.
Lindsey RL
,
Trees E
,
Sammons S
,
Loparev V
,
Frace M
,
Strockbine N
,
Sabol AL
,
Sowers E
,
Stripling D
,
Martin H
,
Knipe K
,
Rowe L
,
Gerner-Smidt P
.
Genome Announc 2014 2 (4)
Antimicrobial resistance genes in multidrug-resistant Salmonella enterica isolated from animals, retail meats, and humans in the United States and Canada.
Glenn LM , Lindsey RL ,
Folster JP
,
Pecic G
,
Boerlin P , Gilmour MW , Harbottle H , Zhao S , McDermott PF , Fedorka-Cray PJ , Frye JG .
Microb Drug Resist 2013 19 (3) 175-84
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Page last reviewed:
Feb 1, 2024
Content source:
Public Health Genomics Branch in the Division of Blood Disorders and Public Health Genomics
,
National Center on Birth Defects and Developmental Disabilities
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