CDC-Authored Genomics and Precision Health Publications Database

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Last data update: Apr 14, 2025. (Total: 6636 publications)

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Records 1-29 (of 29 Records)

Query Trace: Lindsey RL[original query]
Attribution of Salmonella enterica to Food Sources by Using Whole-Genome Sequencing Data Rose EB , Steele MK , Tolar B , Pettengill J , Batz M , Bazaco M , Tameru B , Cui Z , Lindsey RL , Simmons M , Chen J , Posny D , Carleton H , Bruce BB . Emerg Infect Dis 2025 31 (4) 783-790
Kalamari: a representative set of genomes of public health concern Katz LS , Griswold T , Lindsey RL , Lauer AC , Im MS , Williams G , Halpin JL , Gómez GA , Kucerova Z , Morrison S , Page A , Den Bakker HC , Carleton HA . Microbiol Resour Announc 2025 e0096324
Conditional expression of flagellar motility, curli fimbriae, and biofilms in Shiga toxin- producing Escherichia albertii Carter MQ , Carychao D , Lindsey RL . Front Microbiol 2024 15 1456637
Genetic diversity in Salmonella enterica in outbreaks of foodborne and zoonotic origin in the USA in 2006-2017 Trees E , Carleton HA , Folster JP , Gieraltowski L , Hise K , Leeper M , Nguyen TA , Poates A , Sabol A , Tagg KA , Tolar B , Vasser M , Webb HE , Wise M , Lindsey RL . Microorganisms 2024 12 (8)
Rapid identification of enteric bacteria from whole genome sequences using average nucleotide identity metrics Lindsey RL , Gladney LM , Huang AD , Griswold T , Katz LS , Dinsmore BA , Im MS , Kucerova Z , Smith PA , Lane C , Carleton HA . Front Microbiol 2023 14 1225207
Genomic and phenotypic characterization of shiga toxin-producing Escherichia albertii strains isolated from wild birds in a major agricultural region in California Carter MQ , Quiñones B , He X , Pham A , Carychao D , Cooley MB , Lo CC , Chain PSG , Lindsey RL , Bono JL . Microorganisms 2023 11 (11)
Identification and characterization of ten Escherichia coli strains encoding novel shiga toxin 2 subtypes, Stx2n as well as Stx2j, Stx2m, and Stx2o, in the United States Lindsey RL , Prasad A , Feldgarden M , Gonzalez-Escalona N , Kapsak C , Klimke W , Melton-Celsa A , Smith P , Souvorov A , Truong J , Scheutz F . Microorganisms 2023 11 (10)
Longitudinal surveillance and comparative characterization of Escherichia albertii in wild raccoons in the United States. Hinenoya A , Wang H , Patrick EM , Zeng X , Cao L , Li XP , Lindsey RL , Gillespie B , He Q , Yamasaki S , Lin J . Microbiol Res 2022 262 127109
Use of Large-Scale Genomics to Identify the Role of Animals and Foods as Potential Sources of Extraintestinal Pathogenic Escherichia coli That Cause Human Illness. Harrison L , Tyson GH , Strain E , Lindsey RL , Strockbine N , Ceric O , Fortenberry GZ , Harris B , Shaw S , Tillman G , Zhao S , Dessai U . Foods 2022 11 (13)
The Use of Whole-Genome Sequencing by the Federal Interagency Collaboration for Genomics for Food and Feed Safety in the United States. Stevens EL , Carleton HA , Beal J , Tillman GE , Lindsey RL , Lauer AC , Pightling A , Jarvis KG , Ottesen A , Ramachandran P , Hintz L , Katz LS , Folster JP , Whichard JM , Trees E , Timme RE , McDermott P , Wolpert B , Bazaco M , Zhao S , Lindley S , Bruce BB , Griffin PM , Brown E , Allard M , Tallent S , Irvin K , Hoffmann M , Wise M , Tauxe R , Gerner-Smidt P , Simmons M , Kissler B , Defibaugh-Chavez S , Klimke W , Agarwala R , Lindsay J , Cook K , Austerman SR , Goldman D , McGarry S , Hale KR , Dessai U , Musser SM , Braden C . J Food Prot 2022 85 (5) 755-772
PacBio Genome Sequences of Eight Escherichia albertii Strains Isolated from Humans in the United States. Lindsey RL , Rowe LA , Batra D , Smith P , Strockbine NA . Microbiol Resour Announc 2019 8 (9)
Conjugal Transfer, Whole Genome Sequencing, and Plasmid Analysis of Four mcr-1 -bearing Isolates from U.S. Patients. Zhu W , Lawsin A , Lindsey RL , Batra D , Knipe K , Yoo BB , Perry KA , Rowe LA , Lonsway D , Waters MS , Rasheed JK , Halpin AL . Antimicrob Agents Chemother 2019 63 (4)
PacBio Genome Sequences of Escherichia coli Serotype O157:H7, Diffusely Adherent E. coli , and Salmonella enterica Strains, All Carrying Plasmids with an mcr-1 Resistance Gene. Lindsey RL , Batra D , Smith P , Patel PN , Tagg KA , Garcia-Toledo L , Loparev VN , Juieng P , Sheth M , Joung YJ , Rowe LA . Microbiol Resour Announc 2018 7 (14)
Interlaboratory Evaluation of the U.S. Food and Drug Administration Escherichia coli Identification Microarray for Profiling Shiga Toxin-Producing Escherichia coli. Patel IR , Gangiredla J , Lacher DW , Mammel MK , Bagi L , Baranzoni GM , Fratamico PM , Roberts EL , Deb Roy C , Lindsey RL , VStoneburg D , Martin H , Smith P , Strockbine NA , Elkins CA , Scheutz F , Feng PCH . J Food Prot 2018 81 (8) 1275-1282
High-Quality Whole-Genome Sequences for 77 Shiga Toxin-Producing Escherichia coli Strains Generated with PacBio Sequencing. Patel PN , Lindsey RL , Garcia-Toledo L , Rowe LA , Batra D , Whitley SW , Drapeau D , Stoneburg D , Martin H , Juieng P , Loparev VN , Strockbine N . Genome Announc 2018 6 (19)
High-Quality Whole-Genome Sequences for 59 Historical Shigella Strains Generated with PacBio Sequencing. Kim J , Lindsey RL , Garcia-Toledo L , Loparev VN , Rowe LA , Batra D , Juieng P , Stoneburg D , Martin H , Knipe K , Smith P , Strockbine N . Genome Announc 2018 6 (15)
High-Quality Complete and Draft Genome Sequences for Three Escherichia spp. and Three Shigella spp. Generated with Pacific Biosciences and Illumina Sequencing and Optical Mapping. Schroeder MR , Juieng P , Batra D , Knipe K , Rowe LA , Sheth M , Smith P , Garcia-Toledo L , Loparev VN , Lindsey RL . Genome Announc 2018 6 (1)
High-Quality Whole-Genome Sequences for 21 Enterotoxigenic Escherichia coli Strains Generated with PacBio Sequencing. Smith P , Lindsey RL , Rowe LA , Batra D , Stripling D , Garcia-Toledo L , Drapeau D , Knipe K , Strockbine N . Genome Announc 2018 6 (2)
Next-Generation Sequencing Technologies and their Application to the Study and Control of Bacterial Infections. Besser J , Carleton HA , Gerner-Smidt P , Lindsey RL , Trees E . Clin Microbiol Infect 2017 24 (4) 335-341
High-Quality Draft Genome Sequences for Four Drug-Resistant or Outbreak-Associated Shigella sonnei Strains Generated with PacBio Sequencing and Whole-Genome Maps. Lindsey RL , Batra D , Rowe L , Loparev V N , Juieng P , Garcia-Toledo L , Bicknese A , Stripling D , Martin H , Chen J , Strockbine N , Trees E . Genome Announc 2017 5 (35)
Multiplex polymerase chain reaction for identification of Escherichia coli, Escherichia albertii and Escherichia fergusonii. Lindsey RL , Garcia-Toledo L , Fasulo D , Gladney LM , Strockbine N . J Microbiol Methods 2017 140 1-4
High-Quality Genome Sequence of an Escherichia coli O157 Strain Carrying an mcr-1 Resistance Gene Isolated from a Patient in the United States. Lindsey RL , Batra D , Rowe L , Loparev VN , Stripling D , Garcia-Toledo L , Knipe K , Juieng P , Sheth M , Martin H , Laufer Halpin A . Genome Announc 2017 5 (11)
High-Quality Draft Genome Sequences for Five Non-O157 Shiga Toxin-Producing Escherichia coli Strains Generated with PacBio Sequencing and Optical Maps. Lindsey RL , Rowe L , Garcia-Toledo L , Loparev V , Knipe K , Stripling D , Martin H , Trees E , Juieng P , Batra D , Strockbine N . Genome Announc 2016 4 (3)
Implementation of Whole Genome Sequencing (WGS) for Identification and Characterization of Shiga Toxin-Producing Escherichia coli (STEC) in the United States. Lindsey RL , Pouseele H , Chen JC , Strockbine NA , Carleton HA . Front Microbiol 2016 7 766
Complete Genome Sequences of Two Shiga Toxin-Producing Escherichia coli Strains from Serotypes O119:H4 and O165:H25. Lindsey RL , Knipe K , Rowe L , Garcia-Toledo L , Loparev V , Juieng P , Trees E , Strockbine N , Stripling D , Gerner-Smidt P . Genome Announc 2015 3 (6)
Genome Sequence of a Urease-Positive Campylobacter lari Strain. Meinersmann RJ , Bono JL , Lindsey RL , Genzlinger LL , Loparev VN , Oakley BB . Genome Announc 2015 3 (5)
Evaluating the occurrence of Escherichia albertii in chicken carcass rinses by PCR, Vitek analysis, and sequencing of the rpoB gene. Lindsey RL , Fedorka-Cray PJ , Abley M , Turpin JB , Meinersmann RJ . Appl Environ Microbiol 2015 81 (5) 1727-34
Draft Whole-Genome Sequences of Nine Non-O157 Shiga Toxin-Producing Escherichia coli Strains. Lindsey RL , Trees E , Sammons S , Loparev V , Frace M , Strockbine N , Sabol AL , Sowers E , Stripling D , Martin H , Knipe K , Rowe L , Gerner-Smidt P . Genome Announc 2014 2 (4)
Antimicrobial resistance genes in multidrug-resistant Salmonella enterica isolated from animals, retail meats, and humans in the United States and Canada. Glenn LM , Lindsey RL , Folster JP , Pecic G , Boerlin P , Gilmour MW , Harbottle H , Zhao S , McDermott PF , Fedorka-Cray PJ , Frye JG . Microb Drug Resist 2013 19 (3) 175-84