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CDC-Authored Genomics and Precision Health Publications Database|Home|Public Health Genomics and Precision Health Knowledge Base (PHGKB)

CDC-Authored Genomics and Precision Health Publications Database


Last data update: Dec 02, 2024. (Total: 6432 publications)
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Records 1-28 (of 28 Records)
Query Trace: Klugman KP[original query]
Key features of pneumococcal isolates recovered in Central and Northwestern Russia in 2011-2018 determined through whole-genome sequencing.
Egorova E , Kumar N , Gladstone RA , Urban Y , Voropaeva E , Chaplin AV , Rumiantseva E , Svistunova TS , Hawkins PA , Klugman KP , Breiman RF , McGee L , Bentley SD , Lo SW .
Microb Genom 2022 8 (9)
Emergence of a multidrug-resistant and virulent Streptococcus pneumoniae lineage mediates serotype replacement after PCV13: an international whole-genome sequencing study.
Lo SW , Mellor K , Cohen R , Alonso AR , Belman S , Kumar N , Hawkins PA , Gladstone RA , von Gottberg A , Veeraraghavan B , Ravikumar KL , Kandasamy R , Pollard SAJ , Saha SK , Bigogo G , Antonio M , Kwambana-Adams B , Mirza S , Shakoor S , Nisar I , Cornick JE , Lehmann D , Ford RL , Sigauque B , Turner P , Moïsi J , Obaro SK , Dagan R , Diawara I , SkoczyÅ„ska A , Wang H , Carter PE , Klugman KP , Rodgers G , Breiman RF , McGee L , Bentley SD , Almagro CM , Varon E .
Lancet Microbe 2022 3 (10) e735-e743 type
Comparative genomics of disease and carriage serotype 1 pneumococci.
Chaguza C , Ebruke C , Senghore M , Lo SW , Tientcheu PE , Gladstone RA , Tonkin-Hill G , Cornick JE , Yang M , Worwui A , McGee L , Breiman RF , Klugman KP , Kadioglu A , Everett DB , Mackenzie G , Croucher NJ , Roca A , Kwambana-Adams BA , Antonio M , Bentley SD .
Genome Biol Evol 2022 14 (4) type
A Streptococcus pneumoniae lineage usually associated with pneumococcal conjugate vaccine (PCV) serotypes is the most common cause of serotype 35B invasive disease in South Africa, following routine use of PCV.
Ndlangisa KM , du Plessis M , Lo S , de Gouveia L , Chaguza C , Antonio M , Kwambana-Adams B , Cornick J , Everett DB , Dagan R , Hawkins PA , Beall B , Corso A , Grassi Almeida SC , Ochoa TJ , Obaro S , Shakoor S , Donkor ES , Gladstone RA , Ho PL , Paragi M , Doiphode S , Srifuengfung S , Ford R , Moïsi J , Saha SK , Bigogo G , Sigauque B , Eser Ö K , Elmdaghri N , Titov L , Turner P , Kumar KLR , Kandasamy R , Egorova E , Ip M , Breiman RF , Klugman KP , McGee L , Bentley SD , von Gottberg A , The Global Pneumococcal Sequencing Consortium .
Microb Genom 2022 8 (4) type
Widespread sharing of pneumococcal strains in a rural African setting: proximate villages are more likely to share similar strains that are carried at multiple timepoints.
Senghore M , Chaguza C , Bojang E , Tientcheu PE , Bancroft RE , Lo SW , Gladstone RA , McGee L , Worwui A , Foster-Nyarko E , Ceesay F , Okoi CB , Klugman KP , Breiman RF , Bentley SD , Adegbola R , Antonio M , Hanage WP , Kwambana-Adams BA .
Microb Genom 2022 8 (2) type
Genomic surveillance of invasive Streptococcus pneumoniae isolates in the period pre-PCV10 and post-PCV10 introduction in Brazil.
Almeida SCG , Lo SW , Hawkins PA , Gladstone RA , Cassiolato AP , Klugman KP , Breiman RF , Bentley SD , McGee L , Brandileone MC .
Microb Genom 2021 7 (10) type
Population genetic structure, serotype distribution and antibiotic resistance of Streptococcus pneumoniae causing invasive disease in children in Argentina.
Gagetti P , Lo SW , Hawkins PA , Gladstone RA , Regueira M , Faccone D , Sireva-Argentina Group , Klugman KP , Breiman RF , McGee L , Bentley SD , Corso A .
Microb Genom 2021 7 (9) type
Streptococcus pneumoniae genomic datasets from an Indian population describing pre-vaccine evolutionary epidemiology using a whole genome sequencing approach.
Nagaraj G , Govindan V , Ganaie F , Venkatesha VT , Hawkins PA , Gladstone RA , McGee L , Breiman RF , Bentley SD , Klugman KP , Lo SW , Ravikumar KL .
Microb Genom 2021 7 (9)
Phylogeography and resistome of pneumococcal meningitis in West Africa before and after vaccine introduction.
Senghore M , Tientcheu PE , Worwui AK , Jarju S , Okoi C , Suso SMS , Foster-Nyarko E , Ebruke C , Sonko M , Kourna MH , Agossou J , Tsolenyanu E , Renner LA , Ansong D , Sanneh B , Cisse CB , Boula A , Miwanda B , Lo SW , Gladstone RA , Schwartz S , Hawkins P , McGee L , Klugman KP , Breiman RF , Bentley SD , Mwenda JM , Kwambana-Adams BA , Antonio M .
Microb Genom 2021 7 (7) type
Carriage Dynamics of Pneumococcal Serotypes in Naturally Colonized Infants in a Rural African Setting During the First Year of Life.
Chaguza C , Senghore M , Bojang E , Lo SW , Ebruke C , Gladstone RA , Tientcheu PE , Bancroft RE , Worwui A , Foster-Nyarko E , Ceesay F , Okoi C , McGee L , Klugman KP , Breiman RF , Barer MR , Adegbola RA , Antonio M , Bentley SD , Kwambana-Adams BA .
Front Pediatr 2020 8 587730
Bacterial genome-wide association study of hyper-virulent pneumococcal serotype 1 identifies genetic variation associated with neurotropism.
Chaguza C , Yang M , Cornick JE , du Plessis M , Gladstone RA , Kwambana-Adams BA , Lo SW , Ebruke C , Tonkin-Hill G , Peno C , Senghore M , Obaro SK , Ousmane S , Pluschke G , Collard JM , Sigaùque B , French N , Klugman KP , Heyderman RS , McGee L , Antonio M , Breiman RF , von Gottberg A , Everett DB , Kadioglu A , Bentley SD .
Commun Biol 2020 3 (1) 559
Within-host microevolution of Streptococcus pneumoniae is rapid and adaptive during natural colonisation.
Chaguza C , Senghore M , Bojang E , Gladstone RA , Lo SW , Tientcheu PE , Bancroft RE , Worwui A , Foster-Nyarko E , Ceesay F , Okoi C , McGee L , Klugman KP , Breiman RF , Barer MR , Adegbola RA , Antonio M , Bentley SD , Kwambana-Adams BA .
Nat Commun 2020 11 (1) 3442 type
Visualizing variation within Global Pneumococcal Sequence Clusters (GPSCs) and country population snapshots to contextualize pneumococcal isolates.
Gladstone RA , Lo SW , Goater R , Yeats C , Taylor B , Hadfield J , Lees JA , Croucher NJ , van Tonder AJ , Bentley LJ , Quah FX , Blaschke AJ , Pershing NL , Byington CL , Balaji V , Hryniewicz W , Sigauque B , Ravikumar KL , Almeida SCG , Ochoa TJ , Ho PL , du Plessis M , Ndlangisa KM , Cornick JE , Kwambana-Adams B , Benisty R , Nzenze SA , Madhi SA , Hawkins PA , Pollard AJ , Everett DB , Antonio M , Dagan R , Klugman KP , von Gottberg A , Metcalf BJ , Li Y , Beall BW , McGee L , Breiman RF , Aanensen DM , Bentley SD .
Microb Genom 2020 6 (5) type
A mosaic tetracycline resistance gene tet(S/M) detected in an MDR pneumococcal CC230 lineage that underwent capsular switching in South Africa.
Lo SW , Gladstone RA , van Tonder AJ , Du Plessis M , Cornick JE , Hawkins PA , Madhi SA , Nzenze SA , Kandasamy R , Ravikumar KL , Elmdaghri N , Kwambana-Adams B , Almeida SCG , Skoczynska A , Egorova E , Titov L , Saha SK , Paragi M , Everett DB , Antonio M , Klugman KP , Li Y , Metcalf BJ , Beall B , McGee L , Breiman RF , Bentley SD , von Gottberg A .
J Antimicrob Chemother 2019 75 (3) 512-520
Putative novel cps loci in a large global collection of pneumococci.
van Tonder AJ , Gladstone RA , Lo SW , Nahm MH , du Plessis M , Cornick J , Kwambana-Adams B , Madhi SA , Hawkins PA , Benisty R , Dagan R , Everett D , Antonio M , Klugman KP , von Gottberg A , Breiman RF , McGee L , Bentley SD .
Microb Genom 2019 5 (7)
Pneumococcal lineages associated with serotype replacement and antibiotic resistance in childhood invasive pneumococcal disease in the post-PCV13 era: an international whole-genome sequencing study.
Lo SW , Gladstone RA , van Tonder AJ , Lees JA , du Plessis M , Benisty R , Givon-Lavi N , Hawkins PA , Cornick JE , Kwambana-Adams B , Law PY , Ho PL , Antonio M , Everett DB , Dagan R , von Gottberg A , Klugman KP , McGee L , Breiman RF , Bentley SD .
Lancet Infect Dis 2019 19 (7) 759-769
International genomic definition of pneumococcal lineages, to contextualise disease, antibiotic resistance and vaccine impact.
Gladstone RA , Lo SW , Lees JA , Croucher NJ , van Tonder AJ , Corander J , Page AJ , Marttinen P , Bentley LJ , Ochoa TJ , Ho PL , du Plessis M , Cornick JE , Kwambana-Adams B , Benisty R , Nzenze SA , Madhi SA , Hawkins PA , Everett DB , Antonio M , Dagan R , Klugman KP , von Gottberg A , McGee L , Breiman RF , Bentley SD .
EBioMedicine 2019 43 338-346 type
Global distribution of invasive serotype 35D Streptococcus pneumoniae post-PCV13 introduction.
Lo SW , Gladstone RA , van Tonder AJ , Hawkins PA , Kwambana-Adams B , Cornick JE , Madhi SA , Nzenze SA , du Plessis M , Kandasamy R , Carter PE , Koseoglu Eser O , Ho PL , Elmdaghri N , Shakoor S , Clarke SC , Antonio M , Everett DB , von Gottberg A , Klugman KP , McGee L , Breiman RF , Bentley SD .
J Clin Microbiol 2018 56 (7) type
The global distribution and diversity of protein vaccine candidate antigens in the highly virulent Streptococcus pnuemoniae serotype 1.
Cornick JE , Tastan Bishop O , Yalcin F , Kiran AM , Kumwenda B , Chaguza C , Govindpershad S , Ousmane S , Senghore M , du Plessis M , Pluschke G , Ebruke C , McGee L , Sigauque B , Collard JM , Bentley SD , Kadioglu A , Antonio M , von Gottberg A , French N , Klugman KP , Heyderman RS , Alderson M , Everett DB .
Vaccine 2017 35 (6) 972-980
Understanding pneumococcal serotype 1 biology through population genomic analysis.
Chaguza C , Cornick JE , Harris SR , Andam CP , Bricio-Moreno L , Yang M , Yalcin F , Ousmane S , Govindpersad S , Senghore M , Ebruke C , Du Plessis M , Kiran AM , Pluschke G , Sigauque B , McGee L , Klugman KP , Turner P , Corander J , Parkhill J , Collard JM , Antonio M , von Gottberg A , Heyderman RS , French N , Kadioglu A , Hanage WP , Everett DB , Bentley SD .
BMC Infect Dis 2016 16 (1) 649
Phylogenetic Analysis of Invasive Serotype 1 Pneumococcus in South Africa, 1989-2013.
du Plessis M , Allam M , Tempia S , Wolter N , de Gouveia L , Mollendorf CV , Jolley KA , Mbelle N , Wadula J , Cornick JE , Everett DB , McGee L , Breiman RF , Gladstone RA , Bentley SD , Klugman KP , von Gottberg A .
J Clin Microbiol 2016 54 (5) 1326-34
Evidence for clonal expansion after antibiotic selection pressure: pneumococcal multilocus sequence types before and after mass azithromycin treatments.
Keenan JD , Klugman KP , McGee L , Vidal JE , Chochua S , Hawkins P , Cevallos V , Gebre T , Tadesse Z , Emerson PM , Jorgensen JH , Gaynor BD , Lietman TM .
J Infect Dis 2014 211 (6) 988-94
Evidence for soft selective sweeps in the evolution of pneumococcal multidrug resistance and vaccine escape.
Croucher NJ , Chewapreecha C , Hanage WP , Harris SR , McGee L , van der Linden M , Song JH , Ko KS , de Lencastre H , Turner C , Yang F , Sa-Leao R , Beall B , Klugman KP , Parkhill J , Turner P , Bentley SD .
Genome Biol Evol 2014 6 (7) 1589-602
Mutations within the rplD Gene of Linezolid-Nonsusceptible Streptococcus pneumoniae Strains Isolated in the United States.
Dong W , Chochua S , McGee L , Jackson D , Klugman KP , Vidal JE .
Antimicrob Agents Chemother 2014 58 (4) 2459-62
Pneumococcal capsular switching: a historical perspective.
Wyres KL , Lambertsen LM , Croucher NJ , McGee L , von Gottberg A , Linares J , Jacobs MR , Kristinsson KG , Beall BW , Klugman KP , Parkhill J , Hakenbeck R , Bentley SD , Brueggemann AB .
J Infect Dis 2013 207 (3) 439-49
Rapid pneumococcal evolution in response to clinical interventions
Croucher NJ , Harris SR , Fraser C , Quail MA , Burton J , van der Linden M , McGee L , von Gottberg A , Song JH , Ko KS , Pichon B , Baker S , Parry CM , Lambertsen LM , Shahinas D , Pillai DR , Mitchell TJ , Dougan G , Tomasz A , Klugman KP , Parkhill J , Hanage WP , Bentley SD .
Science 2011 331 (6016) 430-4
Sequence diversity of the factor H binding protein vaccine candidate in epidemiologically relevant strains of serogroup B Neisseria meningitidis
Murphy E , Andrew L , Lee KL , Dilts DA , Nunez L , Fink PS , Ambrose K , Borrow R , Findlow J , Taha MK , Deghmane AE , Kriz P , Musilek M , Kalmusova J , Caugant DA , Alvestad T , Mayer LW , Sacchi CT , Wang X , Martin D , von Gottberg A , du Plessis M , Klugman KP , Anderson AS , Jansen KU , Zlotnick GW , Hoiseth SK .
J Infect Dis 2009 200 (3) 379-89
Genotypic comparison of invasive Neisseria meningitidis serogroup Y isolates from the United States, South Africa and Israel, 1999-2002
Whitney AM , Coulson GB , von Gottberg A , Block C , Keller N , Mayer LW , Messonnier NE , Klugman KP .
J Clin Microbiol 2009 47 (9) 2787-93
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