CDC-Authored Genomics and Precision Health Publications Database

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Last data update: Oct 07, 2024. (Total: 6342 publications)

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Records 1-30 (of 82 Records)

Query Trace: Khudyakov Y[original query]
Widespread hepatitis C virus transmission network among people who inject drugs in Kenya Akiyama MJ , Khudyakov Y , Ramachandran S , Riback L , Ackerman M , Nyakowa M , Arthur L , Lizcano J , Walker J , Cherutich P , Kurth A . Int J Infect Dis 2024 107215
Coordinated evolution among hepatitis C virus genomic sites is coupled to host factors and resistance to interferon. Lara J , Tavis JE , Donlin MJ , Lee WM , Yuan HJ , Pearlman BL , Vaughan G , Forbi JC , Xia GL , Khudyakov YE . In Silico Biol 2011 11 213-24
Association of antigenic properties to structure of the hepatitis C virus NS3 protein. Lara J , Khudyakov Y . In Silico Biol 2011 11 203-12
Evaluation of viral heterogeneity using next-generation sequencing, end-point limiting-dilution and mass spectrometry. Dimitrova Z , Campo DS , Ramachandran S , Vaughan G , Ganova-Raeva L , Lin Y , Forbi JC , Xia G , Skums P , Pearlman B , Khudyakov Y . In Silico Biol 2011 11 183-92
Hepatitis C virus antigenic convergence. Campo DS , Dimitrova Z , Yokosawa J , Hoang D , Perez NO , Ramachandran S , Khudyakov Y . Sci Rep 2012 2 267
Polyvalent immunization elicits a synergistic broadly neutralizing immune response to hypervariable region 1 variants of hepatitis C virus Mosa AI , Campo DS , Khudyakov Y , AbouHaidar MG , Gehring AJ , Zahoor A , Ball JK , Urbanowicz RA , Feld JJ . Proc Natl Acad Sci U S A 2023 120 (24) e2220294120
A Novel Information-Theory-Based Genetic Distance That Approximates Phenotypic Differences. Campo DS , Mosa A , Khudyakov Y . J Comput Biol 2023 30 (4) 420-431
SOPHIE: Viral outbreak investigation and transmission history reconstruction in a joint phylogenetic and network theory framework. Skums P , Mohebbi F , Tsyvina V , Baykal PI , Nemira A , Ramachandran S , Khudyakov Y . Cell Syst 2022 13 (10) 844-856.e4
Primary case inference in viral outbreaks through analysis of intra-host variant population. Gussler JW , Campo DS , Dimitrova Z , Skums P , Khudyakov Y . BMC Bioinformatics 2022 23 (1) 62
Changing Molecular Epidemiology of Hepatitis A Virus Infection, United States, 1996-2019. Ramachandran S , Xia GL , Dimitrova Z , Lin Y , Montgomery M , Augustine R , Kamili S , Khudyakov Y . Emerg Infect Dis 2021 27 (6) 1742-1745
Quantitative differences between intra-host HCV populations from persons with recently established and persistent infections. Icer Baykal PB , Lara J , Khudyakov Y , Zelikovsky A , Skums P . Virus Evol 2021 7 (1) veaa103
Convex hulls in hamming space enable efficient search for similarity and clustering of genomic sequences. Campo DS , Khudyakov Y . BMC Bioinformatics 2020 21 482
Accurate spatiotemporal mapping of drug overdose deaths by machine learning of drug-related web-searches. Campo DS , Gussler JW , Sue A , Skums P , Khudyakov Y . PLoS One 2020 15 (12) e0243622
Complex genetic encoding of the hepatitis B virus on-drug persistence. Thai H , Lara J , Xu X , Kitrinos K , Gaggar A , Chan HLY , Xia GL , Ganova-Raeva L , Khudyakov Y . Sci Rep 2020 10 (1) 15574
Machine learning can accelerate discovery and application of cyber-molecular cancer diagnostics. Campo DS , Khudyakov Y . J Med Artif Intell 2020 3 (7)
A Phylogenetic Analysis of HCV Transmission, Relapse, and Reinfection Among People Who Inject Drugs Receiving Opioid Agonist Therapy. Akiyama MJ , Lipsey D , Ganova-Raeva L , Punkova L , Agyemang L , Sue A , Ramachandran S , Khudyakov Y , Litwin AH . J Infect Dis 2020 222 (3) 488-498
Entropy of mitochondrial DNA circulating in blood is associated with hepatocellular carcinoma. Campo DS , Nayak V , Srinivasamoorthy G , Khudyakov Y . BMC Med Genomics 2019 12 74
HCV transmission in high-risk communities in Bulgaria. Ganova-Raeva L , Dimitrova Z , Alexiev I , Punkova L , Sue A , Xia GL , Gancheva A , Dimitrova R , Kostadinova A , Golkocheva-Markova E , Khudyakov Y . PLoS One 2019 14 (3) e0212350
A large HCV transmission network enabled a fast-growing HIV outbreak in rural Indiana, 2015. Ramachandran S , Thai H , Forbi JC , Galang RR , Dimitrova Z , Xia GL , Lin Y , Punkova LT , Pontones PR , Gentry J , Blosser SJ , Lovchik J , Switzer WM , Teshale E , Peters P , Ward J , Khudyakov Y . EBioMedicine 2018 37 374-381
Fast estimation of genetic relatedness between members of heterogeneous populations of closely related genomic variants. Tsyvina V , Campo DS , Sims S , Zelikovsky A , Khudyakov Y , Skums P . BMC Bioinformatics 2018 19 360
Automated quality control for a molecular surveillance system. Sims S , Longmire AG , Campo DS , Ramachandran S , Medrzycki M , Ganova-Raeva L , Lin Y , Sue A , Thai H , Zelikovsky A , Khudyakov Y . BMC Bioinformatics 2018 19 358
HCV adaptation to HIV coinfection. Lara J , Teka MA , Sims S , Xia GL , Ramachandran S , Khudyakov Y . Infect Genet Evol 2018 65 216-225
Reactivation of a Vaccine Escape Hepatitis B Virus Mutant in a Cambodian Patient During Anti-Hepatitis C Virus Therapy. Fusco DN , Ganova-Raeva L , Khudyakov Y , Punkova L , Mohamed A , Cheon SSY , Koirala P , Andersson KL , Jourdain G , Sureau C , Chung RT , Lauer G . Front Med (Lausanne) 2018 5 97
QUENTIN: reconstruction of disease transmissions from viral quasispecies genomic data. Skums P , Zelikovsky A , Singh R , Gussler W , Dimitrova Z , Knyazev S , Mandric I , Ramachandran S , Campo D , Jha D , Bunimovich L , Costenbader E , Sexton C , O'Connor S , Xia GL , Khudyakov Y . Bioinformatics 2018 34 (1) 163-170
Transmissibility of intra-host hepatitis C virus variants. Campo DS , Zhang J , Ramachandran S , Khudyakov Y . BMC Genomics 2017 18 881
Identification of recent cases of hepatitis C virus infection using physical-chemical properties of hypervariable region 1 and a radial basis function neural network classifier. Lara J , Teka M , Khudyakov Y . BMC Genomics 2017 18 880
Inference of genetic relatedness between viral quasispecies from sequencing data. Glebova O , Knyazev S , Melnyk A , Artyomenko A , Khudyakov Y , Zelikovsky A , Skums P . BMC Genomics 2017 18 918
GHOST: global hepatitis outbreak and surveillance technology. Longmire AG , Sims S , Rytsareva I , Campo DS , Skums P , Dimitrova Z , Ramachandran S , Medrzycki M , Thai H , Ganova-Raeva L , Lin Y , Punkova LT , Sue A , Mirabito M , Wang S , Tracy R , Bolet V , Sukalac T , Lynberg C , Khudyakov Y . BMC Genomics 2017 18 916
Efficient detection of viral transmissions with Next-Generation Sequencing data. Rytsareva I , Campo DS , Zheng Y , Sims S , Thankachan SV , Tetik C , Chirag J , Chockalingam SP , Sue A , Aluru S , Khudyakov Y . BMC Genomics 2017 18 372
Molecular epidemiology of hepatitis B virus infection in Tanzania. Forbi JC , Dillon M , Purdy MA , Drammeh BS , Tejada-Strop A , McGovern D , Xia GL , Lin Y , Ganova-Raeva LM , Campo DS , Thai H , Vaughan G , Haule D , Kutaga RP , Basavaraju SV , Kamili S , Khudyakov YE . J Gen Virol 2017 98 (5) 1048-1057