CDC-Authored Genomics and Precision Health Publications Database
Last data update: Sep 25, 2023. (Total: 4416 publications since 2011)
| Query Trace: Khudyakov Y[original query] |
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| Polyvalent immunization elicits a synergistic broadly neutralizing immune response to hypervariable region 1 variants of hepatitis C virus
Mosa AI , Campo DS , Khudyakov Y , AbouHaidar MG , Gehring AJ , Zahoor A , Ball JK , Urbanowicz RA , Feld JJ . Proc Natl Acad Sci U S A 2023 120 (24) e2220294120 |
| A Novel Information-Theory-Based Genetic Distance That Approximates Phenotypic Differences.
Campo DS , Mosa A , Khudyakov Y . J Comput Biol 2023 |
| SOPHIE: Viral outbreak investigation and transmission history reconstruction in a joint phylogenetic and network theory framework.
Skums P , Mohebbi F , Tsyvina V , Baykal PI , Nemira A , Ramachandran S , Khudyakov Y . Cell Syst 2022 13 (10) 844-856.e4 |
| Primary case inference in viral outbreaks through analysis of intra-host variant population.
Gussler JW , Campo DS , Dimitrova Z , Skums P , Khudyakov Y . BMC Bioinformatics 2022 23 (1) 62 |
| Changing Molecular Epidemiology of Hepatitis A Virus Infection, United States, 1996-2019.
Ramachandran S , Xia GL , Dimitrova Z , Lin Y , Montgomery M , Augustine R , Kamili S , Khudyakov Y . Emerg Infect Dis 2021 27 (6) 1742-1745 |
| Quantitative differences between intra-host HCV populations from persons with recently established and persistent infections.
IcerBaykal PB , Lara J , Khudyakov Y , Zelikovsky A , Skums P . Virus Evol 2021 7 (1) veaa103 |
| Convex hulls in hamming space enable efficient search for similarity and clustering of genomic sequences.
Campo DS , Khudyakov Y . BMC Bioinformatics 2020 21 482 |
| Accurate spatiotemporal mapping of drug overdose deaths by machine learning of drug-related web-searches.
Campo DS , Gussler JW , Sue A , Skums P , Khudyakov Y . PLoS One 2020 15 (12) e0243622 |
| Complex genetic encoding of the hepatitis B virus on-drug persistence.
Thai H , Lara J , Xu X , Kitrinos K , Gaggar A , Chan HLY , Xia GL , Ganova-Raeva L , Khudyakov Y . Sci Rep 2020 10 (1) 15574 |
| Machine learning can accelerate discovery and application of cyber-molecular cancer diagnostics.
Campo DS , Khudyakov Y . J Med Artif Intell 2020 3 (7) |
| A Phylogenetic Analysis of HCV Transmission, Relapse, and Reinfection Among People Who Inject Drugs Receiving Opioid Agonist Therapy.
Akiyama MJ , Lipsey D , Ganova-Raeva L , Punkova L , Agyemang L , Sue A , Ramachandran S , Khudyakov Y , Litwin AH . J Infect Dis 2020 222 (3) 488-498 |
| Entropy of mitochondrial DNA circulating in blood is associated with hepatocellular carcinoma.
Campo DS , Nayak V , Srinivasamoorthy G , Khudyakov Y . BMC Med Genomics 2019 12 74 |
| HCV transmission in high-risk communities in Bulgaria.
Ganova-Raeva L , Dimitrova Z , Alexiev I , Punkova L , Sue A , Xia GL , Gancheva A , Dimitrova R , Kostadinova A , Golkocheva-Markova E , Khudyakov Y . PLoS One 2019 14 (3) e0212350 |
| A large HCV transmission network enabled a fast-growing HIV outbreak in rural Indiana, 2015.
Ramachandran S , Thai H , Forbi JC , Galang RR , Dimitrova Z , Xia GL , Lin Y , Punkova LT , Pontones PR , Gentry J , Blosser SJ , Lovchik J , Switzer WM , Teshale E , Peters P , Ward J , Khudyakov Y . EBioMedicine 2018 37 374-381 |
| Fast estimation of genetic relatedness between members of heterogeneous populations of closely related genomic variants.
Tsyvina V , Campo DS , Sims S , Zelikovsky A , Khudyakov Y , Skums P . BMC Bioinformatics 2018 19 360 |
| Automated quality control for a molecular surveillance system.
Sims S , Longmire AG , Campo DS , Ramachandran S , Medrzycki M , Ganova-Raeva L , Lin Y , Sue A , Thai H , Zelikovsky A , Khudyakov Y . BMC Bioinformatics 2018 19 358 |
| HCV adaptation to HIV coinfection.
Lara J , Teka MA , Sims S , Xia GL , Ramachandran S , Khudyakov Y . Infect Genet Evol 2018 65 216-225 |
| Reactivation of a Vaccine Escape Hepatitis B Virus Mutant in a Cambodian Patient During Anti-Hepatitis C Virus Therapy.
Fusco DN , Ganova-Raeva L , Khudyakov Y , Punkova L , Mohamed A , Cheon SSY , Koirala P , Andersson KL , Jourdain G , Sureau C , Chung RT , Lauer G . Front Med (Lausanne) 2018 5 97 |
| QUENTIN: reconstruction of disease transmissions from viral quasispecies genomic data.
Skums P , Zelikovsky A , Singh R , Gussler W , Dimitrova Z , Knyazev S , Mandric I , Ramachandran S , Campo D , Jha D , Bunimovich L , Costenbader E , Sexton C , O'Connor S , Xia GL , Khudyakov Y . Bioinformatics 2018 34 (1) 163-170 |
| Transmissibility of intra-host hepatitis C virus variants.
Campo DS , Zhang J , Ramachandran S , Khudyakov Y . BMC Genomics 2017 18 881 |
| Identification of recent cases of hepatitis C virus infection using physical-chemical properties of hypervariable region 1 and a radial basis function neural network classifier.
Lara J , Teka M , Khudyakov Y . BMC Genomics 2017 18 880 |
| Inference of genetic relatedness between viral quasispecies from sequencing data.
Glebova O , Knyazev S , Melnyk A , Artyomenko A , Khudyakov Y , Zelikovsky A , Skums P . BMC Genomics 2017 18 918 |
| GHOST: global hepatitis outbreak and surveillance technology.
Longmire AG , Sims S , Rytsareva I , Campo DS , Skums P , Dimitrova Z , Ramachandran S , Medrzycki M , Thai H , Ganova-Raeva L , Lin Y , Punkova LT , Sue A , Mirabito M , Wang S , Tracy R , Bolet V , Sukalac T , Lynberg C , Khudyakov Y . BMC Genomics 2017 18 916 |
| Efficient detection of viral transmissions with Next-Generation Sequencing data.
Rytsareva Inna, Campo David S, Zheng Yueli, Sims Seth, Thankachan Sharma V, Tetik Cansu, Chirag Jain, Chockalingam Sriram P, Sue Amanda, Aluru Srinivas, Khudyakov Yury.BMC genomics 2017 May (Suppl 4) 372 . BMC genomics 2017 May (Suppl 4) 372 |
| Molecular epidemiology of hepatitis B virus infection in Tanzania.
Forbi Joseph C, Dillon Michael, Purdy Michael A, Drammeh Bakary S, Tejada-Strop Alexandra, McGovern Daniel, Xia Guo-Liang, Lin Yulin, Ganova-Raeva Lilia M, Campo David S, Thai Hong, Vaughan Gilberto, Haule Dunstan, Kutaga Regina P, Basavaraju Sridhar V, Kamili Saleem, Khudyakov Yury E.The Journal of general virology 2017 May . The Journal of general virology 2017 May |
| Increased Mitochondrial Genetic Diversity in Persons Infected With Hepatitis C Virus.
Campo David S, Roh Ha-Jung, Pearlman Brian L, Fierer Daniel S, Ramachandran Sumathi, Vaughan Gilberto, Hinds Andrew, Dimitrova Zoya, Skums Pavel, Khudyakov Yury.Cellular and molecular gastroenterology and hepatology 2016 Sep (5) 676-684 . Cellular and molecular gastroenterology and hepatology 2016 Sep (5) 676-684 |
| Modeling the functional state of the reverse transcriptase of hepatitis B virus and its application to probing drug-protein interaction.
Xu Xiaojun, Thai Hong, Kitrinos Kathryn M, Xia Guoliang, Gaggar Anuj, Paulson Matthew, Ganova-Raeva Lilia, Khudyakov Yury, Lara James. BMC bioinformatics 2016 17 Suppl 8280 . BMC bioinformatics 2016 17 Suppl 8280 |
| HIV Infection Linked to Injection Use of Oxymorphone in Indiana, 2014-2015.
Peters Philip J, Pontones Pamela, Hoover Karen W, Patel Monita R, Galang Romeo R, Shields Jessica, Blosser Sara J, Spiller Michael W, Combs Brittany, Switzer William M, Conrad Caitlin, Gentry Jessica, Khudyakov Yury, Waterhouse Dorothy, Owen S Michele, Chapman Erika, Roseberry Jeremy C, McCants Veronica, Weidle Paul J, Broz Dita, Samandari Taraz, Mermin Jonathan, Walthall Jennifer, Brooks John T, Duwve Joan M, . The New England journal of medicine 2016 Jul 375(3) 229-39 . The New England journal of medicine 2016 Jul 375(3) 229-39 |
| The spread of hepatitis C virus genotype 1a in North America: a retrospective phylogenetic study.
Joy Jeffrey B, McCloskey Rosemary M, Nguyen Thuy, Liang Richard H, Khudyakov Yury, Olmstead Andrea, Krajden Mel, Ward John W, Harrigan P Richard, Montaner Julio S G, Poon Art F Y.The Lancet. Infectious diseases 2016 Mar . The Lancet. Infectious diseases 2016 Mar |
| Next-Generation Sequencing Reveals Frequent Opportunities for Exposure to Hepatitis C Virus in Ghana.
Forbi Joseph C, Layden Jennifer E, Phillips Richard O, Mora Nallely, Xia Guo-Liang, Campo David S, Purdy Michael A, Dimitrova Zoya E, Owusu Dorcas O, Punkova Lili T, Skums Pavel, Owusu-Ofori Shirley, Sarfo Fred Stephen, Vaughan Gilberto, Roh Hajung, Opare-Sem Ohene K, Cooper Richard S, Khudyakov Yury E. PloS one 2015 10(12) e0145530 . PloS one 2015 (12) e0145530 |
- Page last reviewed:Feb 1, 2023
- Page last updated:Sep 25, 2023
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