CDC-Authored Genomics and Precision Health Publications Database

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Last data update: Dec 09, 2024. (Total: 6442 publications)

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Records 1-30 (of 36 Records)

Query Trace: Karlsson M[original query]
Spatiotemporal evolution and transmission dynamics of Alpha and Delta SARS-CoV-2 variants contributing to sequential outbreaks in Cambodia during 2021 Su YCF , Zeller MA , Ou TP , Ma J , Pum L , Zhang R , Rath S , Heang V , Kol S , Lim R , Chea KL , Khun L , Heng L , Krang S , Raftery P , Kinzer MH , Ieng V , Kab V , Patel S , Sar B , Horm VS , Yann S , Auerswald H , Siegers JY , Troupin C , Boukli N , Vandelannoote K , Wong FY , Ng GGK , Chan M , Sorn S , Sengdoeurn Y , Heng S , Darapheak C , Savuth C , Khalakdina A , Ly S , Baril L , Spiegel A , Duong V , Ly S , Smith GJD , Karlsson EA . Commun Med (Lond) 2024 4 (1) 252
Characterization of carbapenem-resistant Enterobacterales and Pseudomonas aeruginosa carrying multiple carbapenemase genes-Antimicrobial Resistance Laboratory Network, 2018-2022 Sabour S , Harrington KRV , Martinson E , Bhatnagar AS , Huang JY , Duffy D , Bantle K , Lutgring JD , Karlsson M , Baca S . J Clin Microbiol 2024 e0122024
Sentinel Surveillance reveals phylogenetic diversity and detection of linear plasmids harboring vanA and optrA among enterococci collected in the United States Kent AG , Spicer LM , Campbell D , Breaker E , McAllister GA , Ewing TO , Longo C , Balbuena R , Burroughs M , Burgin A , Padilla J , Johnson JK , Halpin AL , McKay SL , Rasheed JK , Elkins CA , Karlsson M , Lutgring JD , Gargis AS . Antimicrob Agents Chemother 2024 e0059124
Complete genome sequences of Clostridioides difficile surveillance isolates representing the top 10 ribotypes from the Emerging Infections Program, United States, 2016 Adamczyk M , Vlachos N , Breaker E , Orazi G , Paulick AL , Rowe LA , McAllister G , Machado MJ , Korhonen L , Guh AY , Rasheed JK , Karlsson M , McKay SL , Lutgring JD , Gargis AS . Microbiol Resour Announc 2024 e0112823
Comparison of carbapenem-susceptible and carbapenem-resistant Enterobacterales at nine sites in the USA, 2013-2016: a resource for antimicrobial resistance investigators Lutgring JD , Kent AG , Bowers JR , Jasso-Selles DE , Albrecht V , Stevens VA , Pfeiffer A , Barnes R , Engelthaler DM , Johnson JK , Gargis AS , Rasheed JK , Limbago BM , Elkins CA , Karlsson M , Halpin AL . Microb Genom 2023 9 (11)
Performance evaluation of the Streck ARM-D® β-Lactamase Kit for molecular detection of acquired β-lactamase genes Yoo BB , Yamamoto N , Quintero JI , Machado MJ , Sabour S , Blosser S , Karlsson M , Rasheed JK , Brown AC . J Glob Antimicrob Resist 2024
Genomic epidemiology of SARS-CoV-2 in Cambodia, January 2020 to February 2021. Su YCF , Ma JZJ , Ou TP , Pum L , Krang S , Raftery P , Kinzer MH , Bohl J , Ieng V , Kab V , Patel S , Sar B , Ying WF , Jayakumar J , Horm VS , Boukli N , Yann S , Troupin C , Heang V , Garcia-Rivera JA , Sengdoeurn Y , Heng S , Lay S , Chea S , Darapheak C , Savuth C , Khalakdina A , Ly S , Baril L , Manning JE , Simone-Loriere E , Duong V , Dussart P , Sovann L , Smith GJD , Karlsson EA . Virus Evol 2023 9 (1) veac121
Reference Susceptibility Testing and Genomic Surveillance of Clostridioides difficile, United States, 2012-17. Gargis AS , Karlsson M , Paulick AL , Anderson KF , Adamczyk M , Vlachos N , Kent AG , McAllister GA , McKay SL , Halpin AL , Albrecht V , Campbell D , Korhonen L , Elkins CA , Rasheed JK , Guh AY , McDonald LC , Lutgring JD . Clin Infect Dis 2022 76 (5) 890-896
Whole-Genome Sequencing Reveals Diversity of Carbapenem-Resistant Pseudomonas aeruginosa Collected through CDC's Emerging Infections Program, United States, 2016-2018. Stanton RA , Campbell D , McAllister GA , Breaker E , Adamczyk M , Daniels JB , Lutgring JD , Karlsson M , Schutz K , Jacob JT , Wilson LE , Vaeth E , Li L , Lynfield R , Snippes Vagnone PM , Phipps EC , Hancock EB , Dumyati G , Tsay R , Cassidy PM , Mounsey J , Grass JE , Bulens SN , Walters MS , Halpin AL . Antimicrob Agents Chemother 2022 66 (9) e0049622
Evaluation of MALDI Biotyper Mycobacteria Library for Identification of Nontuberculous Mycobacteria. Toney NC , Zhu W , Jensen B , Gartin J , Anderson K , Lonsway D , Karlsson M , Rasheed JK . J Clin Microbiol 2022 60 (9) e0021722
Carbapenem-Resistant enterobacterales in individuals with and without health care risk factors -Emerging infections program, United States, 2012-2015. Bulens SN , Reses HE , Ansari UA , Grass JE , Carmon C , Albrecht V , Lawsin A , McAllister G , Daniels J , Lee YK , Yi S , See I , Jacob JT , Bower CW , Wilson L , Vaeth E , Lynfield R , Vagnone PS , Shaw KM , Dumyati G , Tsay R , Phipps EC , Bamberg W , Janelle SJ , Beldavs ZG , Cassidy PM , Kainer M , Muleta D , Mounsey JT , Laufer-Halpin A , Karlsson M , Lutgring JD , Walters MS . Am J Infect Control 2022 51 (1) 70-77
Molecular Epidemiology of Carbapenem-Resistant Acinetobacter baumannii in the United States, 2013-2017. McKay SL , Vlachos N , Daniels JB , Albrecht VS , Stevens VA , Rasheed JK , Johnson JK , Lutgring JD , Sjölund-Karlsson M , Halpin AL . Microb Drug Resist 2022 28 (6) 645-653
Sentinel Surveillance Reveals Emerging Daptomycin-Resistant ST736 Enterococcus faecium and Multiple Mechanisms of Linezolid Resistance in Enterococci in the United States. Gargis AS , Spicer LM , Kent AG , Zhu W , Campbell D , McAllister G , Ewing TO , Albrecht V , Stevens VA , Sheth M , Padilla J , Batra D , Johnson JK , Halpin AL , Rasheed JK , Elkins CA , Karlsson M , Lutgring JD . Front Microbiol 2021 12 807398
Epidemiology of extended-spectrum β-lactamase-producing Enterobacterales in five US sites participating in the Emerging Infections Program, 2017. Duffy N , Karlsson M , Reses HE , Campbell D , Daniels J , Stanton RA , Janelle SJ , Schutz K , Bamberg W , Rebolledo PA , Bower C , Blakney R , Jacob JT , Phipps EC , Flores KG , Dumyati G , Kopin H , Tsay R , Kainer MA , Muleta D , Byrd-Warner B , Grass JE , Lutgring JD , Rasheed JK , Elkins CA , Magill SS , See I . Infect Control Hosp Epidemiol 2022 43 (11) 1-9
Molecular Characterization of Carbapenem-Resistant Enterobacterales Collected in the United States. Karlsson M , Lutgring JD , Ansari U , Lawsin A , Albrecht V , McAllister G , Daniels J , Lonsway D , McKay S , Beldavs Z , Bower C , Dumyati G , Gross A , Jacob J , Janelle S , Kainer MA , Lynfield R , Phipps EC , Schutz K , Wilson L , Witwer ML , Bulens SN , Walters MS , Duffy N , Kallen AJ , Elkins CA , Rasheed JK . Microb Drug Resist 2022 28 (4) 389-397
Genetic and Antigenic Characterization of an Influenza A(H3N2) Outbreak in Cambodia and the Greater Mekong Subregion during the COVID-19 Pandemic, 2020. Siegers JY , Dhanasekaran V , Xie R , Deng YM , Patel S , Ieng V , Moselen J , Peck H , Aziz A , Sarr B , Chin S , Heng S , Khalakdina A , Kinzer M , Chau D , Raftery P , Duong V , Sovann L , Barr IG , Karlsson EA . J Virol 2021 95 (24) e0126721
Detection and Characterization of Targeted Carbapenem-Resistant Healthcare-Associated Threats: Findings from The Antibiotic Resistance Laboratory Network, 2017-2019. Sabour S , Huang JY , Bhatnagar A , Gilbert SE , Karlsson M , Lonsway D , Lutgring JD , Rasheed JK , Halpin AL , Stanton RA , Gumbis S , Elkins CA , Brown AC . Antimicrob Agents Chemother 2021 65 (12) Aac0110521
Carbapenemase production among less-common Enterobacterales genera: 10 US sites, 2018. Shugart A , Mahon G , Huang JY , Karlsson M , Valley A , Lasure M , Gross A , Pattee B , Vaeth E , Brooks R , Maruca T , Dominguez CE , Torpey D , Francis D , Bhattarai R , Kainer MA , Chan A , Dubendris H , Greene SR , Blosser SJ , Shannon DJ , Jones K , Brennan B , Hun S , D'Angeli M , Murphy CN , Tierney M , Reese N , Bhatnagar A , Kallen A , Brown AC , Spalding Walters M . JAC Antimicrob Resist 2021 3 (3) dlab137
Aztreonam-Avibactam Susceptibility Testing Program for Metallo-Beta-Lactamase-Producing Enterobacterales in the Antibiotic Resistance Laboratory Network, March 2019 to December 2020. Bhatnagar A , Boyd S , Sabour S , Bodnar J , Nazarian E , Peinovich N , Wagner C , Craft B , Vagnone PS , Simpson J , Stone VN , Therrien M , Bateman A , Lower D , Huang JY , Gumbis S , Lonsway D , Lutgring JD , Karlsson M , Brown AC . Antimicrob Agents Chemother 2021 65 (8) Aac0048621
Acquisition of ciprofloxacin resistance among an expanding clade of β-lactamase positive, serogroup Y Neisseria meningitidis in the United States. Potts CC , Retchless AC , McNamara LA , Marasini D , Reese N , Swint S , Hu F , Sharma S , Blain AE , Lonsway D , Karlsson M , Hariri S , Fox LM , Wang X . Clin Infect Dis 2021 73 (7) 1185-1193
Antimicrobial Susceptibility Profiles to Predict the Presence of Carbapenemase Genes among Carbapenem-Resistant Vallabhaneni S , Huang JY , Grass JE , Bhatnagar A , Sabour S , Lutgring JD , Campbell D , Karlsson M , Kallen AJ , Nazarian E , Snavely EA , Morris S , Wang C , Lee R , Koag M , Lewis R , Garcia B , Brown AC , Walters MS . J Clin Microbiol 2021 59 (6)
Characterization of Clostridioides difficile Isolates Available through the CDC & FDA Antibiotic Resistance Isolate Bank. Paulick A , Adamczyk M , Anderson K , Vlachos N , Machado MJ , McAllister G , Korhonen L , Guh AY , Halpin AL , Rasheed JK , Karlsson M , Lutgring JD , Gargis AS . Microbiol Resour Announc 2021 10 (1)
Complete Genome Sequence of Francisella sp. Strain LA11-2445 (FDC406), a Novel Francisella Species Isolated from a Human Skin Lesion. Öhrman C , Uneklint I , Karlsson L , Respicio-Kingry L , Forsman M , Petersen JM , Sjödin A . Microbiol Resour Announc 2021 10 (2)
Assessing the in vitro impact of ceftazidime on aztreonam/avibactam susceptibility testing for highly resistant MBL-producing Enterobacterales. Bhatnagar A , Ransom EM , Machado MJ , Boyd S , Reese N , Anderson K , Lonsway D , Elkins CA , Rasheed JK , Patel JB , Karlsson M , Brown AC , Lutgring JD . J Antimicrob Chemother 2020 76 (4) 979-983
An influenza A(H3N2) virus outbreak during the COVID-19 pandemic, Kingdom of Cambodia, 2020. Sovann L , Sar B , Kab V , Yann S , Kinzer M , Raftery P , Albalak R , Patel S , Long Hay P , Seng H , Um S , Chin S , Chau D , Khalakdina A , Karlsson E , Olsen SJ , Mott JA . Int J Infect Dis 2020 103 352-357
Detection of Ciprofloxacin-Resistant, β-Lactamase-Producing Neisseria meningitidis Serogroup Y Isolates - United States, 2019-2020. McNamara LA , Potts C , Blain AE , Retchless AC , Reese N , Swint S , Lonsway D , Karlsson M , Lunquest K , Sweitzer JJ , Wang X , Hariri S , Fox LM . MMWR Morb Mortal Wkly Rep 2020 69 (24) 735-739
Vagococcus bubulae sp. nov., isolated from ground beef, and Vagococcus vulneris sp. nov., isolated from a human foot wound. Shewmaker PL , Whitney AM , Gulvik CA , Humrighouse BW , Gartin J , Moura H , Barr JR , Moore ERB , Karlsson R , Pinto TCA , Teixeira LM . Int J Syst Evol Microbiol 2019 69 (8) 2268-2276
Development and Validation of a Clinical Laboratory Improvement Amendments-Compliant Multiplex Real-Time PCR Assay for Detection of mcr Genes. Daniels JB , Campbell D , Boyd S , Ansari U , Lutgring J , Rasheed JK , Halpin AL , Sjolund-Karlsson M . Microb Drug Resist 2019 25 (7) 991-996
Evaluation of the MicroScan Colistin Well and Gradient Diffusion Strips for Colistin Susceptibility Testing in Enterobacteriaceae . Lutgring JD , Kim A , Campbell D , Karlsson M , Brown AC , Burd EM . J Clin Microbiol 2019 57 (5)
Genomic Analysis of a Pan-Resistant Isolate of Klebsiella pneumoniae , United States 2016. de Man TJB , Lutgring JD , Lonsway DR , Anderson KF , Kiehlbauch JA , Chen L , Walters MS , Sjolund-Karlsson M , Rasheed JK , Kallen A , Halpin AL . mBio 2018 9 (2)