CDC-Authored Genomics and Precision Health Publications Database

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Last data update: Sep 03, 2024. (Total: 6282 publications)

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Records 1-24 (of 24 Records)

Query Trace: Joseph SJ[original query]
Corrigendum: Patterns of within-host spread of Chlamydia trachomatis between vagina, endocervix and rectum revealed by comparative genomic analysis Joseph SJ , Bommana S , Ziklo N , Kama M , Dean D , Read TD . Front Microbiol 2024 15 1441327
Novel strain of multidrug non-susceptible Neisseria gonorrhoeae in the USA Reimche JL , Pham CD , Joseph SJ , Hutton S , Cartee JC , Ruan Y , Breaux M , Ivanof C , Joshi A , DeMartino M , Kirby JE , Barbee LA , Kersh EN , Roosevelt KA , Hsu KK . Lancet Infect Dis 2024
Molecular investigation of Treponema pallidum strains associated with ocular syphilis in the United States, 2016-2020 Pillay A , Vilfort K , Debra A , Katz SS , Thurlow CM , Joseph SJ , Lundy S , Ji A , Jaeyoung H , Workowski KA , Barrow RY , Danavall D , Pettus K , Chi KH , Kersh EN , Cao W , Chen CY . Microbiol Spectr 2024 e0058124
Genomic analysis of 1710 surveillance-based Neisseria gonorrhoeae isolates from the USA in 2019 identifies predominant strain types and chromosomal antimicrobial-resistance determinants Reimche JL , Clemons AA , Chivukula VL , Joseph SJ , Schmerer MW , Pham CD , Schlanger K , St Cyr SB , Kersh EN , Gernert KM . Microb Genom 2023 9 (5)
Naegleria genus pangenome reveals new structural and functional insights into the versatility of these free-living amoebae. Dereeper A , Allouch N , Guerlais V , Garnier M , Ma L , De Jonckheere JF , Joseph SJ , Ali IKM , Talarmin A , Marcelino I . Front Microbiol 2022 13 1056418
Patterns of within-host spread of Chlamydia trachomatis between vagina, endocervix and rectum revealed by comparative genomic analysis Joseph SJ , Bommana S , Ziklo N , Kama M , Dean D , Read TD . Front Microbiol 2023 14 1154664
Phylogenomic Comparison of Neisseria gonorrhoeae Causing Disseminated Gonococcal Infections and Uncomplicated Gonorrhea in Georgia, United States. Cartee JC , Joseph SJ , Weston E , Pham CD , Thomas JCth , Schlanger K , St Cyr SB , Farley MM , Moore AE , Tunali AK , Cloud C , Raphael BH . Open Forum Infect Dis 2022 9 (7) ofac247
Selective Whole-Genome Amplification as a Tool to Enrich Specimens with Low Treponema pallidum Genomic DNA Copies for Whole-Genome Sequencing. Thurlow CM , Joseph SJ , Ganova-Raeva L , Katz SS , Pereira L , Chen C , Debra A , Vilfort K , Workowski K , Cohen SE , Reno H , Sun Y , Burroughs M , Sheth M , Chi KH , Danavall D , Philip SS , Cao W , Kersh EN , Pillay A . mSphere 2022 7 (3) e0000922
Genomic Insights on Variation Underlying Capsule Expression in Meningococcal Carriage Isolates From University Students, United States, 2015-2016. Whaley MJ , Vuong JT , Topaz N , Chang HY , Thomas JD , Jenkins LT , Hu F , Schmink S , Steward-Clark E , Mathis M , Rodriguez-Rivera LD , Retchless AC , Joseph SJ , Chen A , Acosta AM , McNamara L , Soeters HM , Mbaeyi S , Marjuki H , Wang X . Front Microbiol 2022 13 815044
Global emergence and dissemination of Neisseria gonorrhoeae ST-9363 isolates with reduced susceptibility to azithromycin. Joseph SJ , Thomas Iv JC , Schmerer MW , Cartee J , St Cyr S , Schlanger K , Kersh EN , Raphael BH , Gernert KM . Genome Biol Evol 2021 14 (1)
Evaluation of urethrotropic clade meningococcal infection by urine metagenomic shotgun sequencing. Retchless AC , Itsko M , Bazan JA , Norris Turner A , Hu F , Joseph SJ , Carter A , Brown M , Snyder B , Wang X . J Clin Microbiol 2021 60 (2) Jcm0173221
Comparative Genomic and Transcriptomic Analysis of Naegleria fowleri Clinical and Environmental Isolates. Joseph SJ , Park S , Kelley A , Roy S , Cope JR , Ali IKM . mSphere 2021 6 (4) e0063721
Phylogenomic analysis reveals persistence of gonococcal strains with reduced-susceptibility to extended-spectrum cephalosporins and mosaic penA-34. Thomas 4th JC , Joseph SJ , Cartee JC , Pham CD , Schmerer MW , Schlanger K , St Cyr SB , Kersh EN , Raphael BH . Nat Commun 2021 12 (1) 3801
Genomic analysis of the predominant strains and antimicrobial resistance determinants within 1479 Neisseria gonorrhoeae isolates from the U.S. Gonococcal Isolate Surveillance Project in 2018. Reimche JL , Chivukula VL , Schmerer MW , Joseph SJ , Pham CD , Schlanger K , St Cyr SB , Weinstock HS , Raphael BH , Kersh EN , Gernert KM . Sex Transm Dis 2021 48 S78-S87
Draft Chromosome Sequences of a Clinical Isolate of the Free-Living Ameba Naegleria fowleri. Ali IKM , Kelley A , Joseph SJ , Park S , Roy S , Jackson J , Cope JR , Rowe LA , Burroughs M , Sheth M , Batra D , Loparev V . Microbiol Resour Announc 2021 10 (15)
Whole-Genome Enrichment and Sequencing of Chlamydia trachomatis Directly from Patient Clinical Vaginal and Rectal Swabs. Bowden KE , Joseph SJ , Cartee JC , Ziklo N , Danavall D , Raphael BH , Read TD , Dean D . mSphere 2021 6 (2)
Full Molecular Typing of Neisseria meningitidis Directly from Clinical Specimens for Outbreak Investigation. Itsko M , Retchless AC , Joseph SJ , Turner AN , Bazan JA , Sadji AY , Ouédraogo-Traoré R , Wang X . J Clin Microbiol 2020 58 (12)
Insights on Population Structure and Within-Host Genetic Changes among Meningococcal Carriage Isolates from U.S. Universities. Joseph SJ , Topaz N , Chang HY , Whaley MJ , Vuong JT , Chen A , Hu F , Schmink SE , Jenkins LT , Rodriguez-Rivera LD , Thomas JD , Acosta AM , McNamara L , Soeters HM , Mbaeyi S , Wang X . mSphere 2020 5 (2)
Genetic Similarity of Gonococcal Homologs to Meningococcal Outer Membrane Proteins of Serogroup B Vaccine. Marjuki H , Topaz N , Joseph SJ , Gernert KM , Kersh EN , Wang X . mBio 2019 10 (5)
Meningococcal Disease Among College-Aged Young Adults: 2014-2016. Mbaeyi SA , Joseph SJ , Blain A , Wang X , Hariri S , MacNeil JR . Pediatrics 2019 143 (1)
Whole genome sequencing for investigations of meningococcal outbreaks in the United States: a retrospective analysis. Whaley MJ , Joseph SJ , Retchless AC , Kretz CB , Blain A , Hu F , Chang HY , Mbaeyi SA , MacNeil JR , Read TD , Wang X . Sci Rep 2018 8 (1) 15803
Emergence of Localized Serogroup W Meningococcal Disease in the United States - Georgia, 2006-2016. Moore AE , MacNeil JR , Wang X , Joseph SJ , Lorentzson L , Thomas S , Tunali A , Parrott T , Farley MM , Tobin-D'Angelo M . MMWR Morb Mortal Wkly Rep 2018 67 (32) 894-897
Population structure of invasive Neisseria meningitidis in the United States, 2011-15. Potts CC , Joseph SJ , Chang HY , Chen A , Vuong J , Hu F , Jenkins LT , Schmink S , Blain A , MacNeil JR , Harrison LH , Wang X . J Infect 2018 77 (5) 427-434
Dynamics of genome change among Legionella species. Joseph SJ , Cox D , Wolff B , Morrison SS , Kozak-Muiznieks NA , Frace M , Didelot X , Castillo-Ramirez S , Winchell J , Read TD , Dean D . Sci Rep 2016 6 33442