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CDC-Authored Genomics and Precision Health Publications Database|Home|PHGKB

CDC-Authored Genomics and Precision Health Publications Database


Last data update: Nov 28, 2023. (Total: 4484 publications since 2011)
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Records 1-29 (of 29 Records)
Query Trace: Jain S[original query]
Development of reverse genetic tools to study Chapare and Machupo viruses
Jain S , Shrivastava-Ranjan P , Flint M , Montgomery JM , Spiropoulou CF , Albariño CG .
Virology 2023 588 109888
Urinary paraben concentrations and associations with the periconceptional urinary metabolome: Untargeted and targeted metabolomics analyses of participants from the Early Pregnancy Study
Rosen Vollmar AK , Rattray NJW , Cai Y , Jain A , Yan H , Deziel NC , Calafat AM , Wilcox AJ , Jukic AMZ , Johnson CH .
Environ Health Perspect 2023 131 (9) 97006
Travel history among persons infected with SARS-CoV-2 variants of concern in the United States, December 2020-February 2021.
Dunajcik A , Haire K , Thomas JD , Moriarty LF , Springer Y , Villanueva JM , MacNeil A , Silk B , Nemhauser JB , Byrkit R , Taylor M , Queen K , Tong S , Lee J , Batra D , Paden C , Henderson T , Kunkes A , Ojo M , Firestone M , MartinWebb L , Freeland M , Brown CM , Williams T , Allen K , Kauerauf J , Wilson E , Jain S , McDonald E , Silver E , Stous S , Wadford D , Radcliffe R , Marriott C , Owes JP , Bart SM , Sosa LE , Oakeson K , Wodniak N , Shaffner J , Brown Q , Westergaard R , Salinas A , Hallyburton S , Ogale Y , Offutt-Powell T , Bonner K , Tubach S , VanHouten C , Hughes V , Reeb V , Galeazzi C , Khuntia S , McGee S , Hicks JT , DineshPatel D , Krueger A , Hughes S , Jeanty F , Wang JC , Lee EH , Assanah-Deane T , Tompkins M , Dougherty K , Naqvi O , Donahue M , Frederick J , Abdalhamid B , Powers AM , Anderson M .
PLOS Glob Public Health 2023 3 (3) e0001252 type
Evaluation of individual and ensemble probabilistic forecasts of COVID-19 mortality in the United States.
Cramer EY , Ray EL , Lopez VK , Bracher J , Brennen A , CastroRivadeneira AJ , Gerding A , Gneiting T , House KH , Huang Y , Jayawardena D , Kanji AH , Khandelwal A , Le K , Mhlemann A , Niemi J , Shah A , Stark A , Wang Y , Wattanachit N , Zorn MW , Gu Y , Jain S , Bannur N , Deva A , Kulkarni M , Merugu S , Raval A , Shingi S , Tiwari A , White J , Abernethy NF , Woody S , Dahan M , Fox S , Gaither K , Lachmann M , Meyers LA , Scott JG , Tec M , Srivastava A , George GE , Cegan JC , Dettwiller ID , England WP , Farthing MW , Hunter RH , Lafferty B , Linkov I , Mayo ML , Parno MD , Rowland MA , Trump BD , Zhang-James Y , Chen S , Faraone SV , Hess J , Morley CP , Salekin A , Wang D , Corsetti SM , Baer TM , Eisenberg MC , Falb K , Huang Y , Martin ET , McCauley E , Myers RL , Schwarz T , Sheldon D , Gibson GC , Yu R , Gao L , Ma Y , Wu D , Yan X , Jin X , Wang YX , Chen Y , Guo L , Zhao Y , Gu Q , Chen J , Wang L , Xu P , Zhang W , Zou D , Biegel H , Lega J , McConnell S , Nagraj VP , Guertin SL , Hulme-Lowe C , Turner SD , Shi Y , Ban X , Walraven R , Hong QJ , Kong S , vandeWalle A , Turtle JA , Ben-Nun M , Riley S , Riley P , Koyluoglu U , DesRoches D , Forli P , Hamory B , Kyriakides C , Leis H , Milliken J , Moloney M , Morgan J , Nirgudkar N , Ozcan G , Piwonka N , Ravi M , Schrader C , Shakhnovich E , Siegel D , Spatz R , Stiefeling C , Wilkinson B , Wong A , Cavany S , Espaa G , Moore S , Oidtman R , Perkins A , Kraus D , Kraus A , Gao Z , Bian J , Cao W , LavistaFerres J , Li C , Liu TY , Xie X , Zhang S , Zheng S , Vespignani A , Chinazzi M , Davis JT , Mu K , Pastore YPionttiA , Xiong X , Zheng A , Baek J , Farias V , Georgescu A , Levi R , Sinha D , Wilde J , Perakis G , Bennouna MA , Nze-Ndong D , Singhvi D , Spantidakis I , Thayaparan L , Tsiourvas A , Sarker A , Jadbabaie A , Shah D , DellaPenna N , Celi LA , Sundar S , Wolfinger R , Osthus D , Castro L , Fairchild G , Michaud I , Karlen D , Kinsey M , Mullany LC , Rainwater-Lovett K , Shin L , Tallaksen K , Wilson S , Lee EC , Dent J , Grantz KH , Hill AL , Kaminsky J , Kaminsky K , Keegan LT , Lauer SA , Lemaitre JC , Lessler J , Meredith HR , Perez-Saez J , Shah S , Smith CP , Truelove SA , Wills J , Marshall M , Gardner L , Nixon K , Burant JC , Wang L , Gao L , Gu Z , Kim M , Li X , Wang G , Wang Y , Yu S , Reiner RC , Barber R , Gakidou E , Hay SI , Lim S , Murray C , Pigott D , Gurung HL , Baccam P , Stage SA , Suchoski BT , Prakash BA , Adhikari B , Cui J , Rodrguez A , Tabassum A , Xie J , Keskinocak P , Asplund J , Baxter A , Oruc BE , Serban N , Arik SO , Dusenberry M , Epshteyn A , Kanal E , Le LT , Li CL , Pfister T , Sava D , Sinha R , Tsai T , Yoder N , Yoon J , Zhang L , Abbott S , Bosse NI , Funk S , Hellewell J , Meakin SR , Sherratt K , Zhou M , Kalantari R , Yamana TK , Pei S , Shaman J , Li ML , Bertsimas D , SkaliLami O , Soni S , TaziBouardi H , Ayer T , Adee M , Chhatwal J , Dalgic OO , Ladd MA , Linas BP , Mueller P , Xiao J , Wang Y , Wang Q , Xie S , Zeng D , Green A , Bien J , Brooks L , Hu AJ , Jahja M , McDonald D , Narasimhan B , Politsch C , Rajanala S , Rumack A , Simon N , Tibshirani RJ , Tibshirani R , Ventura V , Wasserman L , O'Dea EB , Drake JM , Pagano R , Tran QT , Ho LST , Huynh H , Walker JW , Slayton RB , Johansson MA , Biggerstaff M , Reich NG .
Proc Natl Acad Sci U S A 2022 119 (15) e2113561119 type
VPipe: an Automated Bioinformatics Platform for Assembly and Management of Viral Next-Generation Sequencing Data.
Wagner DD , Marine RL , Ramos E , Ng TFF , Castro CJ , Okomo-Adhiambo M , Harvey K , Doho G , Kelly R , Jain Y , Tatusov RL , Silva H , Rota PA , Khan AN , Oberste MS .
Microbiol Spectr 2022 10 (2) e0256421 type
Household transmission of SARS-CoV-2 Alpha variant - United States, 2021.
Donnelly MAP , Chuey MR , Soto R , Schwartz NG , Chu VT , Konkle SL , Sleweon S , Ruffin J , Haberling DL , Guagliardo SAJ , Stoddard RA , Anderson RD , Morgan CN , Rossetti R , McCormick DW , Magleby R , Sheldon SW , Dietrich EA , Uehara A , Retchless AC , Tong S , Folster JM , Drobeniuc J , Petway ME , Austin B , Stous S , McDonald E , Jain S , Hudziec MM , Stringer G , Albanese BA , Totten SE , Staples JE , Killerby ME , Hughes L , Matanock A , Beatty M , Tate JE , Kirking HL , Hsu CH .
Clin Infect Dis 2022 75 (1) e122-e132 type
Rapid Assessment and Containment of Candida auris Transmission in Postacute Care Settings-Orange County, California, 2019.
Karmarkar EN , O'Donnell K , Prestel C , Forsberg K , Gade L , Jain S , Schan D , Chow N , McDermott D , Rossow J , Toda M , Ruiz R , Hun S , Dale JL , Gross A , Maruca T , Glowicz J , Brooks R , Bagheri H , Nelson T , Gualandi N , Khwaja Z , Horwich-Scholefield S , Jacobs J , Cheung M , Walters M , Jacobs-Slifka K , Stone ND , Mikhail L , Chaturvedi S , Klein L , Vagnone PS , Schneider E , Berkow EL , Jackson BR , Vallabhaneni S , Zahn M , Epson E .
Ann Intern Med 2021 174 (11) 1554-1562
Death From Primary Amebic Meningoencephalitis After Recreational Water Exposure During Recent Travel to India-Santa Clara County, California, 2020.
Harris GR , Karmarkar EN , Quenelle R , Chaille L , Madhok J , Tien V , Gupta J , Jain S , Liu M , Roy S , Narasimhan S , Kimura A , Cope JR , Ali IKM .
Open Forum Infect Dis 2021 8 (8) ofab322
Epidemiologic, immunologic, and virus characteristics in patients with paired SARS-CoV-2 serology and reverse transcription polymerase chain reaction testing.
Shragai T , Smith-Jeffcoat SE , Koh M , Schechter MC , Rebolledo PA , Kasinathan V , Wang Y , Hoffman A , Miller H , Tejada-Strop A , Jain S , Tamin A , Harcourt JL , Thornburg NJ , Wong P , Medrzycki M , Folster JM , Semenova V , Steward-Clark E , Drobenuic J , Biedron C , Stewart RJ , daSilva J , Kirking HL , Tate JE .
J Infect Dis 2021 225 (2) 229-237 type
Timely Intervention and Control of a Novel Coronavirus (COVID-19) Outbreak at a Large Skilled Nursing Facility - San Francisco, California, 2020.
Karmarkar E , Blanco I , Amornkul P , DuBois A , Deng X , Moonan PK , Rubenstein BL , Miller DA , Kennedy I , Yu J , Dauterman J , Ongpin M , Hathaway W , Hoo L , Trammell S , Ememu E , Yu G , Khwaja Z , Lu W , Talai N , Jain S , Louie J , Philip S , Federman S , Masinde G , Wadford DA , Bobba N , Stoltey J , Smith A , Epson E , Chiu C , Bennett A , Vasquez AM , Williams T .
Infect Control Hosp Epidemiol 2020 42 (10) 1-20 type
Whole Genome Sequencing to Identify Drivers of Carbapenem-Resistant Klebsiella pneumoniae Transmission Within and Between Regional Long-Term Acute Care Hospitals.
Han JH , Lapp Z , Bushman F , Lautenbach E , Goldstein EJC , Mattei L , Hofstaedter CE , Kim D , Nachamkin I , Garrigan C , Jain T , Bilker W , Wolford HM , Slayton RB , Wise J , Tolomeo P , Snitkin ES .
Antimicrob Agents Chemother 2019 63 (11)
Use of TaqMan Array card for the detection of respiratory viral pathogens in children under 5 years old hospitalised with acute medical illness in Ballabgarh, Haryana, India.
Gaur B , Saha S , Iuliano AD , Rai SK , Krishnan A , Jain S , Whitaker B , Winchell J , Lal RB , Broor S .
Indian J Med Microbiol 2019 37 (1) 105-108
Antibodies to Enteroviruses in Cerebrospinal Fluid of Patients with Acute Flaccid Myelitis.
Mishra N , Ng TFF , Marine RL , Jain K , Ng J , Thakkar R , Caciula A , Price A , Garcia JA , Burns JC , Thakur KT , Hetzler KL , Routh JA , Konopka-Anstadt JL , Nix WA , Tokarz R , Briese T , Oberste MS , Lipkin WI .
mBio 2019 10 (4)
Multidrug-Resistant Aspergillus fumigatus Carrying Mutations Linked to Environmental Fungicide Exposure - Three States, 2010-2017.
Beer KD , Farnon EC , Jain S , Jamerson C , Lineberger S , Miller J , Berkow EL , Lockhart SR , Chiller T , Jackson BR .
MMWR Morb Mortal Wkly Rep 2018 67 (38) 1064-1067
Identification and characterization of novel mosquito-borne (Kammavanpettai virus) and tick-borne (Wad Medani) reoviruses isolated in India.
Yadav PD , Shete AM , Nyayanit DA , Albarino CG , Jain S , Guerrero LW , Kumar S , Patil DY , Nichol ST , Mourya DT .
J Gen Virol 2018 99 (8) 991-1000
Taxonomy of the family Arenaviridae and the order Bunyavirales: update 2018.
Maes P , Alkhovsky SV , Bao Y , Beer M , Birkhead M , Briese T , Buchmeier MJ , Calisher CH , Charrel RN , Choi IR , Clegg CS , delaTorre JC , Delwart E , DeRisi JL , DiBello PL , DiSerio F , Digiaro M , Dolja VV , Drosten C , Druciarek TZ , Du J , Ebihara H , Elbeaino T , Gergerich RC , Gillis AN , Gonzalez JJ , Haenni AL , Hepojoki J , Hetzel U , Ho T , Hong N , Jain RK , JansenvanVuren P , Jin Q , Jonson MG , Junglen S , Keller KE , Kemp A , Kipar A , Kondov NO , Koonin EV , Kormelink R , Korzyukov Y , Krupovic M , Lambert AJ , Laney AG , LeBreton M , Lukashevich IS , Marklewitz M , Markotter W , Martelli GP , Martin RR , Mielke-Ehret N , Muhlbach HP , Navarro B , Ng TFF , Nunes MRT , Palacios G , Paweska JT , Peters CJ , Plyusnin A , Radoshitzky SR , Romanowski V , Salmenpera P , Salvato MS , Sanfacon H , Sasaya T , Schmaljohn C , Schneider BS , Shirako Y , Siddell S , Sironen TA , Stenglein MD , Storm N , Sudini H , Tesh RB , Tzanetakis IE , Uppala M , Vapalahti O , Vasilakis N , Walker PJ , Wang G , Wang L , Wang Y , Wei T , Wiley MR , Wolf YI , Wolfe ND , Wu Z , Xu W , Yang L , Yang Z , Yeh SD , Zhang YZ , Zheng Y , Zhou X , Zhu C , Zirkel F , Kuhn JH .
Arch Virol 2018 163 (8) 2295-2310
Viral Diversity of House Mice in New York City.
Williams SH , Che X , Garcia JA , Klena JD , Lee B , Muller D , Ulrich W , Corrigan RM , Nichol S , Jain K , Lipkin WI .
mBio 2018 9 (2)
Rhinovirus Viremia in Patients Hospitalized with Community Acquired Pneumonia.
Lu Xiaoyan, Schneider Eileen, Jain Seema, Bramley Anna M, Hymas Weston, Stockmann Chris, Ampofo Krow, Arnold Sandra R, Williams Derek J, Self Wesley H, Patel Anami, Chappell James D, Grijalva Carlos G, Anderson Evan J, Wunderink Richard G, McCullers Jonathan A, Edwards Kathryn M, Pavia Andrew T, Erdman Dean D. The Journal of infectious diseases 2017 Aug .
The Journal of infectious diseases 2017 Aug
Human Bocavirus Capsid Messenger RNA Detection in Children With Pneumonia.
Schlaberg Robert, Ampofo Krow, Tardif Keith D, Stockmann Chris, Simmon Keith E, Hymas Weston, Flygare Steven, Kennedy Brett, Blaschke Anne, Eilbeck Karen, Yandell Mark, McCullers Jon A, Williams Derek J, Edwards Kathryn, Arnold Sandra R, Bramley Anna, Jain Seema, Pavia Andrew T. The Journal of infectious diseases 2017 Sep 216(6) 688-696 .
The Journal of infectious diseases 2017 Sep 216(6) 688-696
Efficient detection of viral transmissions with Next-Generation Sequencing data.
Rytsareva Inna, Campo David S, Zheng Yueli, Sims Seth, Thankachan Sharma V, Tetik Cansu, Chirag Jain, Chockalingam Sriram P, Sue Amanda, Aluru Srinivas, Khudyakov Yury.BMC genomics 2017 May (Suppl 4) 372 .
BMC genomics 2017 May (Suppl 4) 372
Viral Pathogen Detection by Metagenomics and Pan Viral Group PCR in Children with Pneumonia Lacking Identifiable Etiology.
Schlaberg Robert, Queen Krista, Simmon Keith, Tardif Keith, Stockmann Chris, Flygare Steven, Kennedy Brett, Voelkerding Karl, Bramley Anna, Zhang Jing, Eilbeck Karen, Yandell Mark, Jain Seema, Pavia Andrew T, Tong Suxiang, Ampofo Krow.The Journal of infectious diseases 2017 Mar .
The Journal of infectious diseases 2017 Mar
Serology Enhances Molecular Diagnosis of Respiratory Virus Infections Other than Influenza in Children and Adults Hospitalized with Community-Acquired Pneumonia.
Zhang Yange, Sakthivel Senthilkumar K, Bramley Anna, Jain Seema, Haynes Amber, Chappell James D, Hymas Weston, Lenny Noel, Patel Anami, Qi Chao, Ampofo Krow, Arnold Sandra R, Self Wesley H, Williams Derek J, Hillyard David, Anderson Evan J, Grijalva Carlos G, Zhu Yuwei, Wunderink Richard G, Edwards Kathryn M, Pavia Andrew T, McCullers Jonathan A, Erdman Dean D. Journal of clinical microbiology 2016 Oct .
Journal of clinical microbiology 2016 Oct
Association of sputum microbiota profiles with severity of community-acquired pneumonia in children.
Pettigrew Melinda M, Gent Janneane F, Kong Yong, Wade Martina, Gansebom Shane, Bramley Anna M, Jain Seema, Arnold Sandra L R, McCullers Jonathan A.BMC infectious diseases 0 (1) 317 .
BMC infectious diseases (1) 317
Taxonomer: an interactive metagenomics analysis portal for universal pathogen detection and host mRNA expression profiling.
Flygare Steven, Simmon Keith, Miller Chase, Qiao Yi, Kennedy Brett, Di Sera Tonya, Graf Erin H, Tardif Keith D, Kapusta Aurélie, Rynearson Shawn, Stockmann Chris, Queen Krista, Tong Suxiang, Voelkerding Karl V, Blaschke Anne, Byington Carrie L, Jain Seema, Pavia Andrew, Ampofo Krow, Eilbeck Karen, Marth Gabor, Yandell Mark, Schlaberg Robert. Genome biology 2016 17(1) 111 .
Genome biology 2016 17(1) 111
Identification of Bacterial and Viral Codetections With Mycoplasma pneumoniae Using the TaqMan Array Card in Patients Hospitalized With Community-Acquired Pneumonia.
Diaz Maureen H, Cross Kristen E, Benitez Alvaro J, Hicks Lauri A, Kutty Preeta, Bramley Anna M, Chappell James D, Hymas Weston, Patel Anami, Qi Chao, Williams Derek J, Arnold Sandra R, Ampofo Krow, Self Wesley H, Grijalva Carlos G, Anderson Evan J, McCullers Jonathan A, Pavia Andrew T, Wunderink Richard G, Edwards Kathryn M, Jain Seema, Winchell Jonas M.Open forum infectious diseases 2016 Mar (2) ofw071 .
Open forum infectious diseases 2016 Mar (2) ofw071
Multistate Outbreak of Respiratory Infections among Unaccompanied Children, June-July 2014.
Tomczyk Sara, Arriola Carmen S, Beall Bernard, Benitez Alvaro, Benoit Stephen R, Berman LaShondra, Bresee Joseph, da Gloria Carvalho Maria, Cohn Amanda, Cross Kristen, Diaz Maureen H, Francois Watkins Louise K, Gierke Ryan, Hagan Jose E, Harris Aaron, Jain Seema, Kim Lindsay, Kobayashi Miwako, Lindstrom Stephen, McGee Lesley, McMorrow Meredith, Metcalf Benjamin L, Moore Matthew R, Moura Iaci, Nix W Allan, Nyangoma Edith, Oberste M Steven, Olsen Sonja J, Pimenta Fabiana, Socias Christina, Thurman Kathleen, Waller Jessica, Waterman Stephen H, Westercamp Matthew, Wharton Melinda, Whitney Cynthia G, Winchell Jonas M, Wolff Bernard, Kim Curi.Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2016 Mar .
Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2016 Mar
Molecular Detection and Characterization of Mycoplasma pneumoniae Among Patients Hospitalized With Community-Acquired Pneumonia in the United States.
Diaz Maureen H, Benitez Alvaro J, Cross Kristen E, Hicks Lauri A, Kutty Preeta, Bramley Anna M, Chappell James D, Hymas Weston, Patel Anami, Qi Chao, Williams Derek J, Arnold Sandra R, Ampofo Krow, Self Wesley H, Grijalva Carlos G, Anderson Evan J, McCullers Jonathan A, Pavia Andrew T, Wunderink Richard G, Edwards Kathryn M, Jain Seema, Winchell Jonas M. Open forum infectious diseases 2015 Sep 2(3) ofv106 .
Open forum infectious diseases 2015 Sep 2(3) ofv106
Genetic variation in the Plasmodium falciparum circumsporozoite protein in India and its relevance to RTS,S malaria vaccine.
Zeeshan Mohammad, Alam Mohammad Tauqeer, Vinayak Sumiti, Bora Hema, Tyagi Rupesh Kumar, Alam Mohd Shoeb, Choudhary Vandana, Mittra Pooja, Lumb Vanshika, Bharti Praveen Kumar, Udhayakumar Venkatachalam, Singh Neeru, Jain Vidhan, Singh Pushpendra Pal, Sharma Yagya Dutta. PLoS ONE 2012 7(8) e43430 .
PLoS ONE 2012 7(8) e43430
sodC-based real-time PCR for detection of Neisseria meningitidis.
Dolan Thomas Jennifer, Hatcher Cynthia P, Satterfield Dara A, Theodore M Jordan, Bach Michelle C, Linscott Kristin B, Zhao Xin, Wang Xin, Mair Raydel, Schmink Susanna, Arnold Kathryn E, Stephens David S, Harrison Lee H, Hollick Rosemary A, Andrade Ana Lucia, Lamaro-Cardoso Juliana, de Lemos Ana Paula S, Gritzfeld Jenna, Gordon Stephen, Soysal Ahmet, Bakir Mustafa, Sharma Dolly, Jain Shabnam, Satola Sarah W, Messonnier Nancy E, Mayer Leonard W. PLoS ONE 2011 6(5) e19361 .
PLoS ONE 2011 6(5) e19361
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