CDC-Authored Genomics and Precision Health Publications Database
Last data update: Sep 09, 2024. (Total: 6293 publications)
| Query Trace: Holmes D[original query] |
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| Outbreak of multidrug-resistant Salmonella infections in people linked to pig ear pet treats, United States, 2015–2019: results of a multistate investigation
Nichols M , Stapleton GS , Rotstein DS , Gollarza L , Adams J , Caidi H , Chen J , Hodges A , Glover M , Peloquin S , Payne L , Norris A , DeLancey S , Donovan D , Dietrich S , Glaspie S , McWilliams K , Burgess E , Holben B , Pietrzen K , Benko S , Feldpausch E , Orel S , Neises D , Kline KE , Tobin B , Caron G , Viveiros B , Miller A , Turner C , Holmes-Talbot K , Mank L , Nishimura C , Nguyen TN , Hale S , Francois Watkins LK . Lancet Reg Health - Am 2024 34 
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| Understanding the divergent evolution andepidemiology of H3N8 influenza viruses indogs andhorses
Wasik BR , Rothschild E , Voorhees IEH , Reedy SE , Murcia PR , Pusterla N , Chambers TM , Goodman LB , Holmes EC , Kile JC , Parrish CR . Virus Evol 2023 9 (2) vead052 |
| Reply to 'Reconciling disparate estimates of viral genetic diversity during human influenza infections'.
Poon LLM , Song T , Wentworth DE , Holmes EC , Greenbaum BD , Peiris JSM , Cowling BJ , Ghedin E . Nat Genet 2019 51 (9) 1301-1303 |
| Agritourism and Kidding Season: A Large Outbreak of Human Shiga Toxin-Producing Escherichia coli O157 (STEC O157) Infections Linked to a Goat Dairy Farm-Connecticut, 2016.
Nichols MC , Gacek P , Phan Q , Gambino-Shirley KJ , Gollarza LM , Schroeder MN , Mercante A , Mullins J , Blackstock A , Laughlin ME , Olson SM , Pizzo E , Nguyen TN , Mank L , Holmes-Talbot K , McNutt A , Noel D , Muyombwe A , Razeq JH , Lis MJ , Sherman B , Kasacek W , Whitlock L , Strockbine N , Martin H , Vidyaprakash E , McCormack P , Cartter M . Front Vet Sci 2021 8 744055
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| SARS-CoV-2 Variants of Interest and Concern naming scheme conducive for global discourse.
Konings F , Perkins MD , Kuhn JH , Pallen MJ , Alm EJ , Archer BN , Barakat A , Bedford T , Bhiman JN , Caly L , Carter LL , Cullinane A , de Oliveira T , Druce J , El Masry I , Evans R , Gao GF , Gorbalenya AE , Hamblion E , Herring BL , Hodcroft E , Holmes EC , Kakkar M , Khare S , Koopmans MPG , Korber B , Leite J , MacCannell D , Marklewitz M , Maurer-Stroh S , Rico JAM , Munster VJ , Neher R , Munnink BO , Pavlin BI , Peiris M , Poon L , Pybus O , Rambaut A , Resende P , Subissi L , Thiel V , Tong S , van der Werf S , von Gottberg A , Ziebuhr J , Van Kerkhove MD . Nat Microbiol 2021 6 (7) 821-823 |
| Global birth defects app: An innovative tool for describing and coding congenital anomalies at birth in low resource settings.
Dolk H , Leke AZ , Whitfield P , Moore R , Karnell K , Barišić I , Barlow-Mosha L , Botto LD , Garne E , Guatibonza P , Godfred-Cato S , Halleux CM , Holmes LB , Moore CA , Orioli I , Raina N , Valencia D . Birth Defects Res 2021 113 (14) 1057-1073 |
| Division of the genus Chryseobacterium: Observation of discontinuities in amino acid identity values, a possible consequence of major extinction events, guides transfer of nine species to the genus Epilithonimonas , eleven species to the genus Kaistella , and three species to the genus Halpernia gen. nov., with description of Kaistella daneshvariae sp. nov. and Epilithonimonas vandammei sp. nov. derived from clinical specimens.
Nicholson AC , Gulvik CA , Whitney AM , Humrighouse BW , Bell ME , Holmes B , Steigerwalt AG , Villarma A , Sheth M , Batra D , Rowe LA , Burroughs M , Pryor JC , Bernardet JF , Hugo C , Kämpfer P , Newman JD , McQuiston JR . Int J Syst Evol Microbiol 2020 70 (8) 4432-4450
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| The origins and genomic diversity of American Civil War Era smallpox vaccine strains.
Duggan AT , Klunk J , Porter AF , Dhody AN , Hicks R , Smith GL , Humphreys M , McCollum AM , Davidson WB , Wilkins K , Li Y , Burke A , Polasky H , Flanders L , Poinar D , Raphenya AR , Lau TTY , Alcock B , McArthur AG , Golding GB , Holmes EC , Poinar HN . Genome Biol 2020 21 (1) 175 |
| Conservation of the name Aeromonas eucrenophila over the name Aeromonas punctata for the organism based on type stain NCMB 74 T and universally defined as ' Aeromonas DNA hybridization group 6'.
Farmer JJ , Holmes B . Int J Syst Evol Microbiol 2020 70 (3) 2158-2162 |
| One hypervirulent clone, sequence type 283, accounts for a large proportion of invasive Streptococcus agalactiae isolated from humans and diseased tilapia in Southeast Asia.
Barkham T , Zadoks RN , Azmai MNA , Baker S , Bich VTN , Chalker V , Chau ML , Dance D , Deepak RN , van Doorn HR , Gutierrez RA , Holmes MA , Huong LNP , Koh TH , Martins E , Mehershahi K , Newton P , Ng LC , Phuoc NN , Sangwichian O , Sawatwong P , Surin U , Tan TY , Tang WY , Thuy NV , Turner P , Vongsouvath M , Zhang D , Whistler T , Chen SL . PLoS Negl Trop Dis 2019 13 (6) e0007421 |
| Virus genomes reveal factors that spread and sustained the Ebola epidemic.
Dudas G , Carvalho LM , Bedford T , Tatem AJ , Baele G , Faria NR , Park DJ , Ladner JT , Arias A , Asogun D , Bielejec F , Caddy SL , Cotten M , D'Ambrozio J , Dellicour S , Caro AD , Diclaro JW , Duraffour S , Elmore MJ , Fakoli LS , Faye O , Gilbert ML , Gevao SM , Gire S , Gladden-Young A , Gnirke A , Goba A , Grant DS , Haagmans BL , Hiscox JA , Jah U , Kugelman JR , Liu D , Lu J , Malboeuf CM , Mate S , Matthews DA , Matranga CB , Meredith LW , Qu J , Quick J , Pas SD , Phan MV , Pollakis G , Reusken CB , Sanchez-Lockhart M , Schaffner SF , Schieffelin JS , Sealfon RS , Simon-Loriere E , Smits SL , Stoecker K , Thorne L , Tobin EA , Vandi MA , Watson SJ , West K , Whitmer S , Wiley MR , Winnicki SM , Wohl S , Wolfel R , Yozwiak NL , Andersen KG , Blyden SO , Bolay F , Carroll MW , Dahn B , Diallo B , Formenty P , Fraser C , Gao GF , Garry RF , Goodfellow I , Gunther S , Happi CT , Holmes EC , Kargbo B , Keita S , Kellam P , Koopmans MP , Kuhn JH , Loman NJ , Magassouba N , Naidoo D , Nichol ST , Nyenswah T , Palacios G , Pybus OG , Sabeti PC , Sall A , Stroher U , Wurie I , Suchard MA , Lemey P , Rambaut A . Nature 2017 544 (7650) 309-315 |
| Mutational Correlates of Virological Failure in Individuals Receiving a WHO-Recommended Tenofovir-Containing First-Line Regimen: An International Collaboration.
Rhee SY , Varghese V , Holmes SP , Van Zyl GU , Steegen K , Boyd MA , Cooper DA , Nsanzimana S , Saravanan S , Charpentier C , de Oliveira T , Etiebet MA , Garcia F , Goedhals D , Gomes P , Gunthard HF , Hamers RL , Hoffmann CJ , Hunt G , Jiamsakul A , Kaleebu P , Kanki P , Kantor R , Kerschberger B , Marconi VC , D'Amour Ndahimana J , Ndembi N , Ngo-Giang-Huong N , Rokx C , Santoro MM , Schapiro JM , Schmidt D , Seu L , Sigaloff KC , Sirivichayakul S , Skhosana L , Sunpath H , Tang M , Yang C , Carmona S , Gupta RK , Shafer RW . EBioMedicine 2017 18 225-235 |
| Estimating the Impact of Raising Prices and Eliminating Discounts on Cigarette Smoking Prevalence in the United States.
Marynak KL , Xu X , Wang X , Holmes CB , Tynan MA , Pechacek T . Public Health Rep 2016 131 (4) 536-543 |
| Ebola Virus Epidemiology, Transmission, and Evolution during Seven Months in Sierra Leone.
Park DJ , Dudas G , Wohl S , Goba A , Whitmer SL , Andersen KG , Sealfon RS , Ladner JT , Kugelman JR , Matranga CB , Winnicki SM , Qu J , Gire SK , Gladden-Young A , Jalloh S , Nosamiefan D , Yozwiak NL , Moses LM , Jiang PP , Lin AE , Schaffner SF , Bird B , Towner J , Mamoh M , Gbakie M , Kanneh L , Kargbo D , Massally JL , Kamara FK , Konuwa E , Sellu J , Jalloh AA , Mustapha I , Foday M , Yillah M , Erickson BR , Sealy T , Blau D , Paddock C , Brault A , Amman B , Basile J , Bearden S , Belser J , Bergeron E , Campbell S , Chakrabarti A , Dodd K , Flint M , Gibbons A , Goodman C , Klena J , McMullan L , Morgan L , Russell B , Salzer J , Sanchez A , Wang D , Jungreis I , Tomkins-Tinch C , Kislyuk A , Lin MF , Chapman S , MacInnis B , Matthews A , Bochicchio J , Hensley LE , Kuhn JH , Nusbaum C , Schieffelin JS , Birren BW , Forget M , Nichol ST , Palacios GF , Ndiaye D , Happi C , Gevao SM , Vandi MA , Kargbo B , Holmes EC , Bedford T , Gnirke A , Stroher U , Rambaut A , Garry RF , Sabeti PC . Cell 2015 161 (7) 1516-26 |
| Phylodynamics of Enterovirus A71-Associated Hand, Foot and Mouth Disease in Viet Nam.
Geoghegan JL , Van Tan L , Kuhnert D , Halpin RA , Lin X , Simenauer A , Akopov A , Das SR , Stockwell TB , Shrivastava S , Ngoc NM , Uyen LT , Tuyen NT , Thanh TT , Hang VT , Qui PT , Hung NT , Khanh TH , Thinh LQ , Nhan LN , Van HM , Viet DC , Tuan HM , Viet HL , Hien TT , Chau NV , Thwaites G , Grenfell BT , Stadler T , Wentworth DE , Holmes EC , Van Doorn HR . J Virol 2015 89 (17) 8871-9 |
| Global migration of influenza A viruses in swine.
Nelson Martha I, Viboud Cécile, Vincent Amy L, Culhane Marie R, Detmer Susan E, Wentworth David E, Rambaut Andrew, Suchard Marc A, Holmes Edward C, Lemey Philippe. Nature communications 2015 Mar 66696 . Nature communications 2015 Mar 66696 |
| Association between alcohol and cardiovascular disease: Mendelian randomisation analysis based on individual participant data.
Holmes MV , Dale CE , Zuccolo L , Silverwood RJ , Guo Y , Ye Z , Prieto-Merino D , Dehghan A , Trompet S , Wong A , Cavadino A , Drogan D , Padmanabhan S , Li S , Yesupriya A , Leusink M , Sundstrom J , Hubacek JA , Pikhart H , Swerdlow DI , Panayiotou AG , Borinskaya SA , Finan C , Shah S , Kuchenbaecker KB , Shah T , Engmann J , Folkersen L , Eriksson P , Ricceri F , Melander O , Sacerdote C , Gamble DM , Rayaprolu S , Ross OA , McLachlan S , Vikhireva O , Sluijs I , Scott RA , Adamkova V , Flicker L , Bockxmeer FM , Power C , Marques-Vidal P , Meade T , Marmot MG , Ferro JM , Paulos-Pinheiro S , Humphries SE , Talmud PJ , Mateo Leach I , Verweij N , Linneberg A , Skaaby T , Doevendans PA , Cramer MJ , Harst Pv , Klungel OH , Dowling NF , Dominiczak AF , Kumari M , Nicolaides AN , Weikert C , Boeing H , Ebrahim S , Gaunt TR , Price JF , Lannfelt L , Peasey A , Kubinova R , Pajak A , Malyutina S , Voevoda MI , Tamosiunas A , Maitland-van der Zee AH , Norman PE , Hankey GJ , Bergmann MM , Hofman A , Franco OH , Cooper J , Palmen J , Spiering W , Jong PA , Kuh D , Hardy R , Uitterlinden AG , Ikram MA , Ford I , Hypponen E , Almeida OP , Wareham NJ , Khaw KT , Hamsten A , Husemoen LL , Tjonneland A , Tolstrup JS , Rimm E , Beulens JW , Verschuren WM , Onland-Moret NC , Hofker MH , Wannamethee SG , Whincup PH , Morris R , Vicente AM , Watkins H , Farrall M , Jukema JW , Meschia J , Cupples LA , Sharp SJ , Fornage M , Kooperberg C , LaCroix AZ , Dai JY , Lanktree MB , Siscovick DS , Jorgenson E , Spring B , Coresh J , Li YR , Buxbaum SG , Schreiner PJ , Ellison RC , Tsai MY , Patel SR , Redline S , Johnson AD , Hoogeveen RC , Hakonarson H , Rotter JI , Boerwinkle E , Bakker PI , Kivimaki M , Asselbergs FW , Sattar N , Lawlor DA , Whittaker J , Davey Smith G , Mukamal K , Psaty BM , Wilson JG , Lange LA , Hamidovic A , Hingorani AD , Nordestgaard BG , Bobak M , Leon DA , Langenberg C , Palmer TM , Reiner AP , Keating BJ , Dudbridge F , Casas JP . BMJ 2014 349 g4164 
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| DNA-DNA hybridization study of strains of Chryseobacterium, Elizabethkingia and Empedobacter and of other usually indole-producing non-fermenters of CDC groups IIc, IIe, IIh and IIi, mostly from human clinical sources, and proposals of Chryseobacterium bernardetii sp. nov., Chryseobacterium carnis sp. nov., Chryseobacterium lactis sp. nov., Chryseobacterium nakagawai sp. nov. and Chryseobacterium taklimakanense comb. nov
Holmes B , Steigerwalt AG , Nicholson AC . Int J Syst Evol Microbiol 2013 63 4639-62 |
| Bats are a major natural reservoir for hepaciviruses and pegiviruses
Quan PL , Firth C , Conte JM , Williams SH , Zambrana-Torrelio CM , Anthony SJ , Ellison JA , Gilbert AT , Kuzmin IV , Niezgoda M , Osinubi MO , Recuenco S , Markotter W , Breiman RF , Kalemba L , Malekani J , Lindblade KA , Rostal MK , Ojeda-Flores R , Suzan G , Davis LB , Blau DM , Ogunkoya AB , Alvarez Castillo DA , Moran D , Ngam S , Akaibe D , Agwanda B , Briese T , Epstein JH , Daszak P , Rupprecht CE , Holmes EC , Lipkin WI . Proc Natl Acad Sci U S A 2013 110 (20) 8194-9 |
| Discovery of diverse polyomaviruses in bats and the evolutionary history of the Polyomaviridae
Tao Y , Shi M , Conrardy C , Kuzmin IV , Recuenco S , Agwanda B , Alvarez DA , Ellison JA , Gilbert AT , Moran D , Niezgoda M , Lindblade KA , Holmes EC , Breiman RF , Rupprecht CE , Tong S . J Gen Virol 2013 94 738-48 |
| Combining real-time polymerase chain reaction using SYBR Green I detection and sequencing to identify vertebrate bloodmeals in fleas.
Graham CB , Black WC , Boegler KA , Montenieri JA , Holmes JL , Gage KL , Eisen RJ . J Med Entomol 2012 49 (6) 1442-52 |
| Investigation of the first laboratory-acquired human cowpox virus infection in the United States.
McCollum AM , Austin C , Nawrocki J , Howland J , Pryde J , Vaid A , Holmes D , Weil MR , Li Y , Wilkins K , Zhao H , Smith SK , Karem K , Reynolds MG , Damon IK . J Infect Dis 2012 206 (1) 63-8 |
| Neisseria gonorrhoeae with high-level resistance to azithromycin: case report of the first isolate identified in the United States
Katz AR , Komeya AY , Soge OO , Kiaha MI , Lee MV , Wasserman GM , Maningas EV , Whelen AC , Kirkcaldy RD , Shapiro SJ , Bolan GA , Holmes KK . Clin Infect Dis 2012 54 (6) 841-3 |
| Whole genome single nucleotide polymorphism based phylogeny of Francisella tularensis and its application to the development of a strain typing assay
Pandya GA , Holmes MH , Petersen JM , Pradhan S , Karamycheva SA , Wolcott MJ , Molins C , Jones M , Schriefer ME , Fleischmann RD , Peterson SN . BMC Microbiol 2009 9 213 |
| Issues in implementing prenatal screening for cystic fibrosis: results of a working conference.
Haddow J E, Bradley L A, Palomaki G E, Doherty R A, Bernhardt B A, Brock D J, Cheuvront B, Cunningham G C, Donnenfeld A E, Erickson J L, Erlich H A, Ferrie R M, FitzSimmons S C, Greene M F, Grody W W, Haddow P K, Harris H, Holmes L B, Howell R R, Katz M, Klinger K W, Kloza E M, LeFevre M L, Little S, Loeben G, McGovern M, Pyeritz R E, Rowley P T, Saiki R K, Short M P, Tabone J, Wald N J, Wilker N L, Witt D R. Genetics in medicine : official journal of the American College of Medical Genetics 2001 1(4) 129-35 . Genetics in medicine : official journal of the American College of Medical Genetics 2001 1(4) 129-35
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