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CDC-Authored Genomics and Precision Health Publications Database|Home|PHGKB

CDC-Authored Genomics and Precision Health Publications Database


Last data update: Jun 28, 2022. (Total: 3910 publications since 2011)
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Records 1-30 (of 183 Records)
Query Trace: Hiv[original query]
Pathogens detected using a syndromic molecular diagnostic platform in patients hospitalized with severe respiratory illness in South Africa in 2017.
Malefu Moleleki, Mignon du Plessis, Kedibone Ndlangisa, Cayla Reddy, Orienka Hellferscee, Omphe Mekgoe, Meredith McMorrow, Sibongile Walaza, Cheryl Cohen, Stefano Tempia, Anne von Gottberg, and Nicole Wolter
International journal of infectious diseases : IJID : official publication of the International Society for Infectious Diseases 2022
Acquired HIV drug resistance among adults living with HIV receiving first-line antiretroviral therapy in Rwanda: A cross-sectional nationally representative survey.
Gentille Musengimana, Elysee Tuyishime, Athanase Kiromera, Samuel S Malamba, Augustin Mulindabigwi, Madjid R Habimana, Cyprien Baribwira, Muhayimpundu Ribakare, Savio D Habimana, Josh Devos, Richard C N Mwesigwa, Eugenie Kayirangwa, Jules M Semuhore, Gallican N Rwibasira, Amitabh B Suthar, and Eric Remera
Antiviral therapy 2022 27(3) 13596535221102690
A Partially Multiplexed HIV Drug Resistance (HIVDR) Assay for Monitoring HIVDR Mutations of the Protease, Reverse-Transcriptase (PRRT), and Integrase (INT).
Joshua DeVos, Kimberly McCarthy, Victor Sewe, Grace Akinyi, Muthoni Junghae, Valarie Opollo, Janin Nouhin, Robert Shafer, Clement Zeh, Artur Ramos, Heather Alexander, and Joy Chang
Microbiology spectrum 2022 e0177621
Cluster Transmission Drives Invasive Group A Streptococcus Disease Within the US and is Focused on Communities Experiencing Disadvantage.
Benjamin Metcalf, Srinivas Nanduri, Sopio Chochua, Yuan Li, Katherine Fleming-Dutra, Lesley McGee, and Bernard Beall
The Journal of infectious diseases 2022
SARS-CoV-2 virus dynamics in recently infected people - data from a household transmission study.
Alexandra M Mellis, Jennifer K Meece, Natasha B Halasa, James D Chappell, Huong Q McLean, Carlos G Grijalva, Kayla E Hanson, Yuwei Zhu, Ahra Kim, Jessica Deyoe, Lynn C Ivacic, Carrie Reed, H Keipp Talbot, and Melissa A Rolfes
The Journal of infectious diseases 2022
Population Size Estimation From Capture-Recapture Studies Using shinyrecap: Design and Implementation of a Web-Based Graphical User Interface.
Anne F McIntyre, Ian E Fellows, Steve Gutreuter, and Wolfgang Hladik
JMIR public health and surveillance 2022 8(4) e32645
Pretreatment Human Immunodeficiency Virus (HIV) Drug Resistance Among Treatment-Naive Infants Newly Diagnosed With HIV in 2016 in Namibia: Results of a Nationally Representative Study.
Michael R Jordan, Leonard Bikinesi, Laimi Ashipala, Nicholus Mutenda, Mary Brantuo, Gillian Hunt, Andreas Shiningavamwe, Gram Mutandi, Anita Beukes, Suzanne Beard, Katherine Battey, Eric J Dziuban, Elliot Raizes, Paul Adjei, Alice Tang, Amalia Giron, and Steven Y Hong
Open forum infectious diseases 2022 9(5) ofac102
Development of a Bead-Based Multiplex Assay for Use in Multianalyte Screening and Surveillance of HIV, Viral Hepatitis, Syphilis, and Herpes.
Ernest L Yufenyuy, Shanmugam Vedapuri, Amy Zheng, Gretchen Cooley, Damien Danavall, Shukla Mayur, Maja Kodani, Cheng Chen, Ye Tun, Yetunde F Fakile, Diana Martin, Saleem Kamili, Kevin Karem, and Bharat S Parekh
Journal of clinical microbiology 2022 e0234821
Drug resistance and use of long-acting ART.
Juliana da Silva, Mark Siedner, Suzanne McCluskey, Nomathemba Chandiwana, Francois Venter, and Elliot Raizes
The lancet. HIV 2022
Use of remnant specimens to assess use of HIV pre-exposure prophylaxis (PrEP) among populations with risk for HIV infection: A novel approach.
Preeti Pathela, Saba Qasmieh, Monica Gandhi, Elliot Rozen, Hideaki Okochi, Harris Goldstein, Betsy C Herold, Kelly Jamison, Julia A Schillinger, and Denis Nash
Journal of acquired immune deficiency syndromes (1999) 2022
Validation of xMAP SARS-CoV-2 Multi-Antigen IgG assay in Nigeria.
Nnaemeka C Iriemenam, Fehintola A Ige, Stacie M Greby, Augustine Mpamugo, Ado G Abubakar, Ayuba B Dawurung, Mudiaga K Esiekpe, Andrew N Thomas, Mary U Okoli, Samuel S Awala, Blessing N Ugboaja, Chicago C Achugbu, Ifeanyichukwu Odoh, Felicia D Nwatu, Temitope Olaleye, Loveth Akayi, Oluwaseun O Akinmulero, Joseph Dattijo, Edewede Onokevbagbe, Olumide Okunoye, Nwando Mba, Ndidi P Agala, Mabel Uwandu, Maureen Aniedobe, Kristen A Stafford, Alash'le Abimiku, Yohhei Hamada, Mahesh Swaminathan, McPaul I Okoye, Laura C Steinhardt, and Rosemary Audu
PloS one 2022 17(4) e0266184
Antibody-dependent cellular cytotoxicity (ADCC) responses along with ADCC susceptibility influence HIV-1 mother to child transmission.
Allison S Thomas, Carolyn Coote, Yvetane Moreau, John E Isaac, Alexander C Ewing, Athena P Kourtis, and Manish Sagar
JCI insight 2022
High prevalence of pre-treatment HIV drug resistance in Papua New Guinea: findings from the first nationally representative pre-treatment HIV drug resistance study.
Janet Gare, Ben Toto, Percy Pokeya, Linh-Vi Le, Nick Dala, Namarola Lote, Bangan John, Abel Yamba, Kevin Soli, Joshua DeVos, Heather Paulin, Nick Wagar, Du-Ping Zheng, Takeshi Nishijima, Peniel Boas, Angela Kelly-Hanku, and Anup Gurung
BMC infectious diseases 2022 22(1) 266
SARS-CoV-2 incidence, transmission, and reinfection in a rural and an urban setting: results of the PHIRST-C cohort study, South Africa, 2020-21.
Cheryl Cohen, Jackie Kleynhans, Anne von Gottberg, Meredith L McMorrow, Nicole Wolter, Jinal N Bhiman, Jocelyn Moyes, Mignon du Plessis, Maimuna Carrim, Amelia Buys, Neil A Martinson, Kathleen Kahn, Stephen Tollman, Limakatso Lebina, Floidy Wafawanaka, Jacques D du Toit, Francesc Xavier Gómez-Olivé, Fatimah S Dawood, Thulisa Mkhencele, Kaiyuan Sun, Cécile Viboud, Stefano Tempia, and
The Lancet. Infectious diseases 2022
Diagnostic Accuracy of Dried Plasma Spot Specimens for HIV-1 Viral Load Testing: A Systematic Review and Meta-analysis.
Youyi Fong, Jessica Markby, Mauro Andreotti, Ingrid Beck, Thomas Bourlet, Don Brambilla, Lisa Frenkel, Rosalia Lira, Julie A E Nelson, Georgios Pollakis, Sandrine Reigadas, Douglas Richman, Souleymane Sawadogo, Laura Waters, Chunfu Yang, Clement Zeh, Meg Doherty, and Lara Vojnov
Journal of acquired immune deficiency syndromes (1999) 2021 89(3) 261-273
HIV-1 drug resistance mutations among individuals with low-level viraemia while taking combination ART in Botswana.
Ontlametse T Bareng, Sikhulile Moyo, Melissa Zahralban-Steele, Dorcas Maruapula, Tsotlhe Ditlhako, Baitshepi Mokaleng, Patrick Mokgethi, Wonderful T Choga, Natasha O Moraka, Molly Pretorius-Holme, Madisa O Mine, Elliot Raizes, Kesaobaka Molebatsi, Modisa S Motswaledi, Irene Gobe, Terence Mohammed, Tendani Gaolathe, Roger Shapiro, Mompati Mmalane, Joseph M Makhema, Shahin Lockman, Max Essex, Vlad Novitsky, Simani Gaseitsiwe, and
The Journal of antimicrobial chemotherapy 2022
Deep-sequence phylogenetics to quantify patterns of HIV transmission in the context of a universal testing and treatment trial - BCPP/ Ya Tsie trial.
Lerato E Magosi, Yinfeng Zhang, Tanya Golubchik, Victor DeGruttola, Eric Tchetgen Tchetgen, Vladimir Novitsky, Janet Moore, Pam Bachanas, Tebogo Segolodi, Refeletswe Lebelonyane, Molly Pretorius Holme, Sikhulile Moyo, Joseph Makhema, Shahin Lockman, Christophe Fraser, Myron Max Essex, Marc Lipsitch, and
eLife 2022 11
Baseline HIV drug resistance testing: 12 U.S. jurisdictions, 2014-2019.
Brandon Hugueley, Robert P McClung, Neeraja Saduvala, Alexandra M Oster, and Anne Marie France
AIDS (London, England) 2022
Deep sequencing of HIV-1 reveals extensive subtype variation and drug resistance after failure of first-line antiretroviral regimens in Nigeria.
Kate El Bouzidi, Rawlings P Datir, Vivian Kwaghe, Sunando Roy, Dan Frampton, Judith Breuer, Obinna Ogbanufe, Fati Murtala-Ibrahim, Man Charurat, Patrick Dakum, Caroline A Sabin, Nicaise Ndembi, and Ravindra K Gupta
The Journal of antimicrobial chemotherapy 2022 77(2) 474-482
Sociodemographic, Ecological, and Spatiotemporal Factors Associated with Human Immunodeficiency Virus Drug Resistance in Florida: A Retrospective Analysis.
Shannan N Rich, Karalee Poschman, Hui Hu, Carla Mavian, Robert L Cook, Marco Salemi, Emma C Spencer, and Mattia Prosperi
The Journal of infectious diseases 2020 223(5) 866-875
Behavioral Efficacy of a Sexual Health Mobile App for Men who have Sex with Men: The M-cubed Randomized Controlled Trial.
Patrick Sean Sullivan, Rob Stephenson, Sabina Hirshfield, C Christina Mehta, Ryan J Zahn, Jose Bauermeister, Keith J Horvath, Mary Ann Chiasson, Deborah Gelaude, Shelby Mullin, Martin J Downing, Evelyn Olansky, Sarah Wiatrek, Erin Q Rogers, Eli S Rosenberg, Aaron J Siegler, and Gordon Mansergh
Journal of medical Internet research 2022
Estimating the contribution of HIV-infected adults to household pneumococcal transmission in South Africa, 2016-2018: A hidden Markov modelling study.
Deus Thindwa, Nicole Wolter, Amy Pinsent, Maimuna Carrim, John Ojal, Stefano Tempia, Jocelyn Moyes, Meredith McMorrow, Jackie Kleynhans, Anne von Gottberg, Neil French, , Cheryl Cohen, and Stefan Flasche
PLoS computational biology 2021 17(12) e1009680
Tuberculosis screening among ambulatory people living with HIV: a systematic review and individual participant data meta-analysis.
Ashar Dhana, Yohhei Hamada, Andre P Kengne, Andrew D Kerkhoff, Molebogeng X Rangaka, Tamara Kredo, Annabel Baddeley, Cecily Miller, Satvinder Singh, Yasmeen Hanifa, Alison D Grant, Katherine Fielding, Dissou Affolabi, Corinne S Merle, Ablo Prudence Wachinou, Christina Yoon, Adithya Cattamanchi, Christopher J Hoffmann, Neil Martinson, Eyongetah Tabenyang Mbu, Melissa S Sander, Taye T Balcha, Sten Skogmar, Byron W P Reeve, Grant Theron, Gcobisa Ndlangalavu, Surbhi Modi, Joseph Cavanaugh, Susan Swindells, Richard E Chaisson, Faiz Ahmad Khan, Andrea A Howard, Robin Wood, Swe Swe Thit, Mar Mar Kyi, Josh Hanson, Paul K Drain, Adrienne E Shapiro, Tendesayi Kufa, Gavin Churchyard, Duc T Nguyen, Edward A Graviss, Stephanie Bjerrum, Isik S Johansen, Jill K Gersh, David J Horne, Sylvia M LaCourse, Haider Abdulrazzaq Abed Al-Darraji, Adeeba Kamarulzaman, Russell R Kempker, Nestani Tukvadze, David A Barr, Graeme Meintjes, and Gary Maartens
The Lancet. Infectious diseases 2021
Need for caution when interpreting Xpert MTB/RIF results for rifampin resistance among children.
W Murithi, E S Click, K D McCarthy, E Okeyo, R Sitati, I Anyango, A Okumu, W Mchembere, R Song, and K Cain
The international journal of tuberculosis and lung disease : the official journal of the International Union against Tuberculosis and Lung Disease 2021 25(11) 911-916
Pre-existing infant antibody-dependent cellular cytotoxicity associates with reduced HIV-1 acquisition and lower morbidity.
Allison S Thomas, Yvetane Moreau, Wenqing Jiang, John E Isaac, Alexander Ewing, Laura F White, Athena P Kourtis, and Manish Sagar
Cell reports. Medicine 2021 2(10) 100412
Kaposi Sarcoma Rates Among Persons Living With Human Immunodeficiency Virus in the United States: 2008-2016.
Qianlai Luo, Anna Satcher Johnson, H Irene Hall, Elizabeth K Cahoon, and Meredith Shiels
Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2020 73(7) e2226-e2233
HIV Cluster and Outbreak Detection and Response: The Science and Experience.
Alexandra M Oster, Sheryl B Lyss, R Paul McClung, Meg Watson, Nivedha Panneer, Angela L Hernandez, Kate Buchacz, Susan E Robilotto, Kathryn G Curran, Rashida Hassan, M Cheryl Bañez Ocfemia, Laurie Linley, Stephen M Perez, Stanley A Phillip, and Anne Marie France
American journal of preventive medicine 2021 61(5S1) S130-S142
Response to a Large HIV Outbreak, Cabell County, West Virginia, 2018-2019.
R Paul McClung, Amy D Atkins, Michael Kilkenny, Kyle T Bernstein, Kara S Willenburg, Matthew Weimer, Susan Robilotto, Nivedha Panneer, Erica Thomasson, Elizabeth Adkins, Sheryl B Lyss, Shawn Balleydier, Anita Edwards, Mi Chen, Suzanne Wilson, Senad Handanagic, Vicki Hogan, Meg Watson, Scott Eubank, Carolyn Wright, Antoine Thompson, Elizabeth DiNenno, Robyn Neblett Fanfair, Alison Ridpath, Alexandra M Oster, and
American journal of preventive medicine 2021 61(5S1) S143-S150
Acquired HIV drug resistance and virologic monitoring in a HIV hyper-endemic setting in KwaZulu-Natal Province, South Africa.
Benjamin Chimukangara, Richard J Lessells, Lavanya Singh, Indra Grigalionyte, Nonhlanhla Yende-Zuma, Rochelle Adams, Halima Dawood, Linda Dlamini, Sibonisile Buthelezi, Sheldon Chetty, Karidia Diallo, Wayne A Duffus, Mary Mogashoa, Melissa B Hagen, Jennifer Giandhari, Tulio de Oliveira, Pravi Moodley, Nesri Padayatchi, and Kogieleum Naidoo
AIDS research and therapy 2021 18(1) 74
Validation of Commercial SARS-CoV-2 Immunoassays in a Nigerian Population.
Fehintola Ige, Yohhei Hamada, Laura Steinhardt, Nnaemeka C Iriemenam, Mabel Uwandu, Stacie Marta Greby, Maureen Aniedobe, Babatunde Lawal Salako, Molebogeng X Rangaka, Ibrahim Abubakar, and Rosemary Audu
Microbiology spectrum 2021 e0068021
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