CDC-Authored Genomics and Precision Health Publications Database

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Last data update: Dec 09, 2024. (Total: 6442 publications)

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Records 1-30 (of 35 Records)

Query Trace: Halpin AL[original query]
Sentinel Surveillance reveals phylogenetic diversity and detection of linear plasmids harboring vanA and optrA among enterococci collected in the United States Kent AG , Spicer LM , Campbell D , Breaker E , McAllister GA , Ewing TO , Longo C , Balbuena R , Burroughs M , Burgin A , Padilla J , Johnson JK , Halpin AL , McKay SL , Rasheed JK , Elkins CA , Karlsson M , Lutgring JD , Gargis AS . Antimicrob Agents Chemother 2024 e0059124
Burkholderia multivorans infections associated with use of ice and water from ice machines for patient care activities - four hospitals, California and Colorado, 2020-2024 Vazquez Deida AA , Spicer KB , McNamara KX , Arduino MJ , Gable P , Halpin AL , Caverly LJ , LiPuma JJ , Bardach B , Mayle C , Baird SN , Czaja CA , Chinn R , Siegel JD , Perkins KM . MMWR Morb Mortal Wkly Rep 2024 73 (39) 883-887
Public health case for microbiome-sparing antibiotics and new opportunities for drug development McDonald LC , Young VB , Wilcox MH , Halpin AL , Chaves RL . mSphere 2024 e0041724
Differentiation of hypervirulent and classical Klebsiella pneumoniae with acquired drug resistance Russo TA , Alvarado CL , Davies CJ , Drayer ZJ , Carlino-MacDonald U , Hutson A , Luo TL , Martin MJ , Corey BW , Moser KA , Rasheed JK , Halpin AL , McGann PT , Lebreton F . mBio 2024 e0286723
Evidence review and recommendations for the implementation of genomics for antimicrobial resistance surveillance: reports from an international expert group Baker KS , Jauneikaite E , Nunn JG , Midega JT , Atun R , Holt KE , Walia K , Howden BP , Tate H , Okeke IN , Carattoli A , Hsu LY , Hopkins KL , Muloi DM , Wheeler NE , Aanensen DM , Mason LCE , Rodgus J , Hendriksen RS , Essack SY , Egyir B , Halpin AL , MacCannell DR , Campos J , Srikantiah P , Feasey NA , Peacock SJ . Lancet Microbe 2023 4 (12) e1035-e1039
Genomics for antimicrobial resistance surveillance to support infection prevention and control in health-care facilities Jauneikaite E , Baker KS , Nunn JG , Midega JT , Hsu LY , Singh SR , Halpin AL , Hopkins KL , Price JR , Srikantiah P , Egyir B , Okeke IN , Holt KE , Peacock SJ , Feasey NA . Lancet Microbe 2023 4 (12) e1040-e1046
Comparison of carbapenem-susceptible and carbapenem-resistant Enterobacterales at nine sites in the USA, 2013-2016: a resource for antimicrobial resistance investigators Lutgring JD , Kent AG , Bowers JR , Jasso-Selles DE , Albrecht V , Stevens VA , Pfeiffer A , Barnes R , Engelthaler DM , Johnson JK , Gargis AS , Rasheed JK , Limbago BM , Elkins CA , Karlsson M , Halpin AL . Microb Genom 2023 9 (11)
Reference Susceptibility Testing and Genomic Surveillance of Clostridioides difficile, United States, 2012-17. Gargis AS , Karlsson M , Paulick AL , Anderson KF , Adamczyk M , Vlachos N , Kent AG , McAllister GA , McKay SL , Halpin AL , Albrecht V , Campbell D , Korhonen L , Elkins CA , Rasheed JK , Guh AY , McDonald LC , Lutgring JD . Clin Infect Dis 2022 76 (5) 890-896
Whole-Genome Sequencing Reveals Diversity of Carbapenem-Resistant Pseudomonas aeruginosa Collected through CDC's Emerging Infections Program, United States, 2016-2018. Stanton RA , Campbell D , McAllister GA , Breaker E , Adamczyk M , Daniels JB , Lutgring JD , Karlsson M , Schutz K , Jacob JT , Wilson LE , Vaeth E , Li L , Lynfield R , Snippes Vagnone PM , Phipps EC , Hancock EB , Dumyati G , Tsay R , Cassidy PM , Mounsey J , Grass JE , Bulens SN , Walters MS , Halpin AL . Antimicrob Agents Chemother 2022 66 (9) e0049622
Differential neutralization and inhibition of SARS-CoV-2 variants by antibodies elicited by COVID-19 mRNA vaccines. Wang L , Kainulainen MH , Jiang N , Di H , Bonenfant G , Mills L , Currier M , Shrivastava-Ranjan P , Calderon BM , Sheth M , Mann BR , Hossain J , Lin X , Lester S , Pusch EA , Jones J , Cui D , Chatterjee P , Jenks MH , Morantz EK , Larson GP , Hatta M , Harcourt JL , Tamin A , Li Y , Tao Y , Zhao K , Lacek K , Burroughs A , Wang W , Wilson M , Wong T , Park SH , Tong S , Barnes JR , Tenforde MW , Self WH , Shapiro NI , Exline MC , Files DC , Gibbs KW , Hager DN , Patel M , Halpin AL , McMullan LK , Lee JS , Xia H , Xie X , Shi PY , Davis CT , Spiropoulou CF , Thornburg NJ , Oberste MS , Dugan VG , Wentworth DE , Zhou B . Nat Commun 2022 13 (1) 4350
Molecular Epidemiology of Carbapenem-Resistant Acinetobacter baumannii in the United States, 2013-2017. McKay SL , Vlachos N , Daniels JB , Albrecht VS , Stevens VA , Rasheed JK , Johnson JK , Lutgring JD , Sjölund-Karlsson M , Halpin AL . Microb Drug Resist 2022 28 (6) 645-653
Sentinel Surveillance Reveals Emerging Daptomycin-Resistant ST736 Enterococcus faecium and Multiple Mechanisms of Linezolid Resistance in Enterococci in the United States. Gargis AS , Spicer LM , Kent AG , Zhu W , Campbell D , McAllister G , Ewing TO , Albrecht V , Stevens VA , Sheth M , Padilla J , Batra D , Johnson JK , Halpin AL , Rasheed JK , Elkins CA , Karlsson M , Lutgring JD . Front Microbiol 2021 12 807398
Genomic Surveillance for SARS-CoV-2 Variants: Predominance of the Delta (B.1.617.2) and Omicron (B.1.1.529) Variants - United States, June 2021-January 2022. Lambrou AS , Shirk P , Steele MK , Paul P , Paden CR , Cadwell B , Reese HE , Aoki Y , Hassell N , Caravas J , Kovacs NA , Gerhart JG , Ng HJ , Zheng XY , Beck A , Chau R , Cintron R , Cook PW , Gulvik CA , Howard D , Jang Y , Knipe K , Lacek KA , Moser KA , Paskey AC , Rambo-Martin BL , Nagilla RR , Rethchless AC , Schmerer MW , Seby S , Shephard SS , Stanton RA , Stark TJ , Uehara A , Unoarumhi Y , Bentz ML , Burhgin A , Burroughs M , Davis ML , Keller MW , Keong LM , Le SS , Lee JS , Madden Jr JC , Nobles S , Owouor DC , Padilla J , Sheth M , Wilson MM , Talarico S , Chen JC , Oberste MS , Batra D , McMullan LK , Halpin AL , Galloway SE , MacCannell DR , Kondor R , Barnes J , MacNeil A , Silk BJ , Dugan VG , Scobie HM , Wentworth DE . MMWR Morb Mortal Wkly Rep 2022 71 (6) 206-211
Extensively Drug-Resistant Carbapenemase-Producing Pseudomonas aeruginosa and Medical Tourism from the United States to Mexico, 2018-2019. Kracalik I , Ham DC , McAllister G , Smith AR , Vowles M , Kauber K , Zambrano M , Rodriguez G , Garner K , Chorbi K , Cassidy PM , McBee S , Stoney RJ , Moser K , Villarino ME , Zazueta OE , Bhatnagar A , Sula E , Stanton RA , Brown AC , Halpin AL , Epstein L , Walters MS . Emerg Infect Dis 2022 28 (1) 51-61
Investigation of Bacterial Infections Among Patients Treated With Umbilical Cord Blood-Derived Products Marketed as Stem Cell Therapies. Hartnett KP , Powell KM , Rankin D , Gable P , Kim JJ , Spoto S , Breaker E , Hunter R , Dotson N , McAllister G , Stevens V , Halpin AL , Houston H , Epson E , Malarkey M , Mendoza M , McNeill L , Perkins KM . JAMA Netw Open 2021 4 (10) e2128615
Detection and Characterization of Targeted Carbapenem-Resistant Healthcare-Associated Threats: Findings from The Antibiotic Resistance Laboratory Network, 2017-2019. Sabour S , Huang JY , Bhatnagar A , Gilbert SE , Karlsson M , Lonsway D , Lutgring JD , Rasheed JK , Halpin AL , Stanton RA , Gumbis S , Elkins CA , Brown AC . Antimicrob Agents Chemother 2021 65 (12) Aac0110521
The Effect of Disinfectants on the Microbial Community on Environmental Healthcare Surfaces using Next Generation Sequencing. Perry-Dow KA , de Man T , Halpin AL , Shams AM , Rose LJ , Noble-Wang JA . Am J Infect Control 2021 50 (1) 54-60
GAMMA: a tool for the rapid identification, classification, and annotation of translated gene matches from sequencing data. Stanton RA , Vlachos N , Halpin AL . Bioinformatics 2021 38 (2) 546-548
Framing Bacterial Genomics for Public Health(care). Halpin AL , McDonald LC , Elkins CA . J Clin Microbiol 2021 59 (12) Jcm0013521
A Comparison of Less Invasive SARS-CoV-2 Diagnostic Specimens in Nursing Home Residents - Arkansas, June-August 2020. Gable P , Huang JY , Gilbert SE , Bollinger S , Lyons AK , Sabour S , Surie D , Biedron C , Haney T , Beshearse E , Gregory CJ , Seely KA , Clemmons NS , Patil N , Kothari A , Gulley T , Garner K , Anderson K , Thornburg NJ , Halpin AL , McDonald LC , Kutty PK , Brown AC . Clin Infect Dis 2021 73 S58-S64
A Comprehensive Approach to Ending an Outbreak of Rare bla OXA-72 gene-positive Carbapenem-resistant Acinetobacter baumannii at a Community Hospital, Kansas City, MO, 2018 McKinsey DS , Gasser C , McKinsey JP , Ditto G , Agard A , Zellmer B , Poteete C , Vagnone PS , Dale JL , Bos J , Hahn R , Turabelidze G , Poiry M , Franklin P , Vlachos N , McAllister GA , Halpin AL , Glowicz J , Ham DC , Epstein L . Am J Infect Control 2021 49 (9) 1183-1185
The State of Microbiome Science at the Intersection of Infectious Diseases and Antimicrobial Resistance. Ranallo RT , McDonald LC , Halpin AL , Hiltke T , Young VB . J Infect Dis 2021 223 S187-S193
Characterization of Clostridioides difficile Isolates Available through the CDC & FDA Antibiotic Resistance Isolate Bank. Paulick A , Adamczyk M , Anderson K , Vlachos N , Machado MJ , McAllister G , Korhonen L , Guh AY , Halpin AL , Rasheed JK , Karlsson M , Lutgring JD , Gargis AS . Microbiol Resour Announc 2021 10 (1)
Development and application of a core genome multilocus sequence typing scheme for the healthcare-associated pathogen Pseudomonas aeruginosa . Stanton RA , McAllister G , Daniels JB , Breaker E , Vlachos N , Gable P , Moulton-Meissner H , Halpin AL . J Clin Microbiol 2020 58 (9)
Gastrointestinal microbiota disruption and risk of colonization with carbapenem-resistant Pseudomonas aeruginosa in ICU patients. Pettigrew MM , Gent JF , Kong Y , Halpin AL , Pineles L , Harris AD , Johnson JK . Clin Infect Dis 2019 69 (4) 604-613
Multicenter Outbreak of Gram-Negative Bloodstream Infections in Hemodialysis Patients. Novosad SA , Lake J , Nguyen D , Soda E , Moulton-Meissner H , Pho MT , Gualandi N , Bepo L , Stanton RA , Daniels JB , Turabelidze G , Van Allen K , Arduino M , Halpin AL , Layden J , Patel PR . Am J Kidney Dis 2019 74 (5) 610-619
Sepsis Attributed to Bacterial Contamination of Platelets Associated with a Potential Common Source - Multiple States, 2018. Jones SA , Jones JM , Leung V , Nakashima AK , Oakeson KF , Smith AR , Hunter R , Kim JJ , Cumming M , McHale E , Young PP , Fridey JL , Kelley WE , Stramer SL , Wagner SJ , West FB , Herron R , Snyder E , Hendrickson JE , Peaper DR , Gundlapalli AV , Langelier C , Miller S , Nambiar A , Moayeri M , Kamm J , Moulton-Meissner H , Annambhotla P , Gable P , McAllister GA , Breaker E , Sula E , Halpin AL , Basavaraju SV . MMWR Morb Mortal Wkly Rep 2019 68 (23) 519-523
Genomic Analysis of Cardiac Surgery-Associated Mycobacterium chimaera Infections, United States. Hasan NA , Epperson LE , Lawsin A , Rodger RR , Perkins KM , Halpin AL , Perry KA , Moulton-Meissner H , Diekema DJ , Crist MB , Perz JF , Salfinger M , Daley CL , Strong M . Emerg Infect Dis 2019 25 (3) 559-563
Development and Validation of a Clinical Laboratory Improvement Amendments-Compliant Multiplex Real-Time PCR Assay for Detection of mcr Genes. Daniels JB , Campbell D , Boyd S , Ansari U , Lutgring J , Rasheed JK , Halpin AL , Sjolund-Karlsson M . Microb Drug Resist 2019 25 (7) 991-996
Conjugal Transfer, Whole Genome Sequencing, and Plasmid Analysis of Four mcr-1 -bearing Isolates from U.S. Patients. Zhu W , Lawsin A , Lindsey RL , Batra D , Knipe K , Yoo BB , Perry KA , Rowe LA , Lonsway D , Waters MS , Rasheed JK , Halpin AL . Antimicrob Agents Chemother 2019 63 (4)