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Public Health Genomics and Precision Health Knowledge Base (v10.0)
PHGKB
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CDC-Authored Genomics and Precision Health Publications Database|Home|Public Health Genomics and Precision Health Knowledge Base (PHGKB)
CDC-Authored Genomics and Precision Health Publications Database
Last data update: Nov 04, 2024
. (Total: 6390 publications)
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Records 1-30 (of 65 Records)
Query Trace:
Halpin A[original query]
Sentinel Surveillance reveals phylogenetic diversity and detection of linear plasmids harboring vanA and optrA among enterococci collected in the United States
Kent AG
,
Spicer LM ,
Campbell D
,
Breaker E
,
McAllister GA
,
Ewing TO , Longo C , Balbuena R , Burroughs M , Burgin A , Padilla J , Johnson JK ,
Halpin AL
,
McKay SL
,
Rasheed JK
,
Elkins CA
,
Karlsson M ,
Lutgring JD
,
Gargis AS
.
Antimicrob Agents Chemother 2024 e0059124
Burkholderia multivorans infections associated with use of ice and water from ice machines for patient care activities - four hospitals, California and Colorado, 2020-2024
Vazquez Deida AA
,
Spicer KB
,
McNamara KX
,
Arduino MJ
,
Gable P
,
Halpin AL
,
Caverly LJ , LiPuma JJ , Bardach B , Mayle C , Baird SN , Czaja CA , Chinn R , Siegel JD ,
Perkins KM
.
MMWR Morb Mortal Wkly Rep 2024 73 (39) 883-887
Public health case for microbiome-sparing antibiotics and new opportunities for drug development
McDonald LC
,
Young VB , Wilcox MH ,
Halpin AL
,
Chaves RL .
mSphere 2024 e0041724
Differentiation of hypervirulent and classical Klebsiella pneumoniae with acquired drug resistance
Russo TA , Alvarado CL , Davies CJ , Drayer ZJ , Carlino-MacDonald U , Hutson A , Luo TL , Martin MJ , Corey BW ,
Moser KA
,
Rasheed JK
,
Halpin AL
,
McGann PT , Lebreton F .
mBio 2024 e0286723
Concurrent transmission of multiple carbapenemases in a long-term acute-care hospital
Rankin DA
,
Walters MS
,
Caicedo L ,
Gable P
,
Moulton-Meissner HA
,
Chan A , Burks A ,
Edwards K
,
McAllister G
,
Kent A
,
Laufer Halpin A
,
Moore C , McLemore T , Thomas L , Dotson NQ , Chu AK .
Infect Control Hosp Epidemiol 2024 1-10
Evidence review and recommendations for the implementation of genomics for antimicrobial resistance surveillance: reports from an international expert group
Baker KS , Jauneikaite E , Nunn JG , Midega JT , Atun R , Holt KE , Walia K , Howden BP , Tate H , Okeke IN , Carattoli A , Hsu LY , Hopkins KL , Muloi DM , Wheeler NE , Aanensen DM , Mason LCE , Rodgus J , Hendriksen RS , Essack SY , Egyir B ,
Halpin AL
,
MacCannell DR
,
Campos J , Srikantiah P , Feasey NA , Peacock SJ .
Lancet Microbe 2023 4 (12) e1035-e1039
Genomics for antimicrobial resistance surveillance to support infection prevention and control in health-care facilities
Jauneikaite E , Baker KS , Nunn JG , Midega JT , Hsu LY , Singh SR ,
Halpin AL
,
Hopkins KL , Price JR , Srikantiah P , Egyir B , Okeke IN , Holt KE , Peacock SJ , Feasey NA .
Lancet Microbe 2023 4 (12) e1040-e1046
Comparison of carbapenem-susceptible and carbapenem-resistant Enterobacterales at nine sites in the USA, 2013-2016: a resource for antimicrobial resistance investigators
Lutgring JD
,
Kent AG
,
Bowers JR , Jasso-Selles DE ,
Albrecht V
,
Stevens VA
,
Pfeiffer A , Barnes R , Engelthaler DM , Johnson JK ,
Gargis AS
,
Rasheed JK
,
Limbago BM
,
Elkins CA
,
Karlsson M
,
Halpin AL
.
Microb Genom 2023 9 (11)
Containment of a Verona integron-encoded metallo-beta-lactamase-producing pseudomonas aeruginosa outbreak associated with an acute care hospital sink-Tennessee, 2018-2020
Chan A , Thure K , Tobey K ,
Shugart A
,
Schmedes S , Burks JAth , Hardin H , Moore C , Carpenter T , Brooks S ,
Gable P
,
Moulton Meissner H
,
McAllister G
,
Lawsin A
,
Laufer Halpin A
,
Spalding Walters M
,
Keaton A .
Open Forum Infect Dis 2023 10 (5) ofad194
Draft Genome Sequences of 20 Clostridium botulinum Type A Isolates from Foodborne Botulism Outbreaks.
Halpin JL
,
Gómez GA
,
Dykes JK
,
Lúquez C
.
Microbiol Resour Announc 2023 12 (1) e0086822
Reference Susceptibility Testing and Genomic Surveillance of Clostridioides difficile, United States, 2012-17.
Gargis AS
,
Karlsson M
,
Paulick AL
,
Anderson KF
,
Adamczyk M
,
Vlachos N
,
Kent AG
,
McAllister GA
,
McKay SL
,
Halpin AL
,
Albrecht V
,
Campbell D
,
Korhonen L
,
Elkins CA
,
Rasheed JK
,
Guh AY
,
McDonald LC
,
Lutgring JD
.
Clin Infect Dis 2022 76 (5) 890-896
Whole-Genome Sequencing Reveals Diversity of Carbapenem-Resistant Pseudomonas aeruginosa Collected through CDC's Emerging Infections Program, United States, 2016-2018.
Stanton RA
,
Campbell D
,
McAllister GA
,
Breaker E
,
Adamczyk M
,
Daniels JB
,
Lutgring JD
,
Karlsson M
,
Schutz K , Jacob JT , Wilson LE , Vaeth E , Li L , Lynfield R , Snippes Vagnone PM , Phipps EC , Hancock EB , Dumyati G , Tsay R , Cassidy PM , Mounsey J ,
Grass JE
,
Bulens SN
,
Walters MS
,
Halpin AL
.
Antimicrob Agents Chemother 2022 66 (9) e0049622
Differential neutralization and inhibition of SARS-CoV-2 variants by antibodies elicited by COVID-19 mRNA vaccines.
Wang L
,
Kainulainen MH
,
Jiang N
,
Di H
,
Bonenfant G
,
Mills L
,
Currier M
,
Shrivastava-Ranjan P
,
Calderon BM
,
Sheth M
,
Mann BR
,
Hossain J
,
Lin X
,
Lester S
,
Pusch EA
,
Jones J
,
Cui D
,
Chatterjee P
,
Jenks MH
,
Morantz EK
,
Larson GP
,
Hatta M
,
Harcourt JL
,
Tamin A
,
Li Y
,
Tao Y
,
Zhao K
,
Lacek K
,
Burroughs A
,
Wang W
,
Wilson M
,
Wong T
,
Park SH
,
Tong S
,
Barnes JR
,
Tenforde MW
,
Self WH , Shapiro NI , Exline MC , Files DC , Gibbs KW , Hager DN ,
Patel M
,
Halpin AL
,
McMullan LK
,
Lee JS
,
Xia H , Xie X , Shi PY ,
Davis CT
,
Spiropoulou CF
,
Thornburg NJ
,
Oberste MS
,
Dugan VG
,
Wentworth DE
,
Zhou B
.
Nat Commun 2022 13 (1) 4350
Carbapenem-Resistant enterobacterales in individuals with and without health care risk factors -Emerging infections program, United States, 2012-2015.
Bulens SN
,
Reses HE
,
Ansari UA
,
Grass JE
,
Carmon C
,
Albrecht V
,
Lawsin A
,
McAllister G
,
Daniels J
,
Lee YK
,
Yi S
,
See I
,
Jacob JT , Bower CW , Wilson L , Vaeth E , Lynfield R , Vagnone PS , Shaw KM , Dumyati G , Tsay R , Phipps EC , Bamberg W , Janelle SJ , Beldavs ZG , Cassidy PM , Kainer M , Muleta D , Mounsey JT ,
Laufer-Halpin A
,
Karlsson M
,
Lutgring JD
,
Walters MS
.
Am J Infect Control 2022 51 (1) 70-77
Draft Genome Sequence of Clostridium botulinum Subtype bont/A5(B2').
Kruemmel AR ,
Halpin JL
,
Foltz V
,
Dykes J
,
Lquez C
.
Microbiol Resour Announc 2022 11 (7) e0034822
Molecular Epidemiology of Carbapenem-Resistant Acinetobacter baumannii in the United States, 2013-2017.
McKay SL
,
Vlachos N
,
Daniels JB
,
Albrecht VS
,
Stevens VA
,
Rasheed JK
,
Johnson JK ,
Lutgring JD
,
Sjölund-Karlsson M
,
Halpin AL
.
Microb Drug Resist 2022 28 (6) 645-653
Sentinel Surveillance Reveals Emerging Daptomycin-Resistant ST736 Enterococcus faecium and Multiple Mechanisms of Linezolid Resistance in Enterococci in the United States.
Gargis AS
,
Spicer LM
,
Kent AG
,
Zhu W
,
Campbell D
,
McAllister G
,
Ewing TO
,
Albrecht V
,
Stevens VA
,
Sheth M
,
Padilla J
,
Batra D
,
Johnson JK ,
Halpin AL
,
Rasheed JK
,
Elkins CA
,
Karlsson M
,
Lutgring JD
.
Front Microbiol 2021 12 807398
Genomic Surveillance for SARS-CoV-2 Variants: Predominance of the Delta (B.1.617.2) and Omicron (B.1.1.529) Variants - United States, June 2021-January 2022.
Lambrou AS
,
Shirk P
,
Steele MK
,
Paul P
,
Paden CR
,
Cadwell B
,
Reese HE
,
Aoki Y
,
Hassell N
,
Caravas J
,
Kovacs NA
,
Gerhart JG ,
Ng HJ
,
Zheng XY ,
Beck A
,
Chau R
,
Cintron R
,
Cook PW
,
Gulvik CA
,
Howard D
,
Jang Y
,
Knipe K
,
Lacek KA
,
Moser KA ,
Paskey AC
,
Rambo-Martin BL
,
Nagilla RR ,
Rethchless AC
,
Schmerer MW
,
Seby S
,
Shephard SS
,
Stanton RA
,
Stark TJ
,
Uehara A
,
Unoarumhi Y
,
Bentz ML
,
Burhgin A
,
Burroughs M
,
Davis ML
,
Keller MW
,
Keong LM ,
Le SS
,
Lee JS
,
Madden Jr JC
,
Nobles S
,
Owouor DC
,
Padilla J
,
Sheth M
,
Wilson MM
,
Talarico S
,
Chen JC
,
Oberste MS
,
Batra D
,
McMullan LK
,
Halpin AL
,
Galloway SE
,
MacCannell DR
,
Kondor R
,
Barnes J
,
MacNeil A
,
Silk BJ
,
Dugan VG
,
Scobie HM
,
Wentworth DE
.
MMWR Morb Mortal Wkly Rep 2022 71 (6) 206-211
Extensively Drug-Resistant Carbapenemase-Producing Pseudomonas aeruginosa and Medical Tourism from the United States to Mexico, 2018-2019.
Kracalik I
,
Ham DC
,
McAllister G
,
Smith AR , Vowles M , Kauber K , Zambrano M , Rodriguez G , Garner K , Chorbi K , Cassidy PM , McBee S ,
Stoney RJ
,
Moser K
,
Villarino ME
,
Zazueta OE , Bhatnagar A ,
Sula E
,
Stanton RA
,
Brown AC
,
Halpin AL
,
Epstein L
,
Walters MS
.
Emerg Infect Dis 2022 28 (1) 51-61
Investigation of Bacterial Infections Among Patients Treated With Umbilical Cord Blood-Derived Products Marketed as Stem Cell Therapies.
Hartnett KP
,
Powell KM
,
Rankin D ,
Gable P
,
Kim JJ , Spoto S ,
Breaker E
,
Hunter R , Dotson N ,
McAllister G
,
Stevens V
,
Halpin AL
,
Houston H
,
Epson E , Malarkey M , Mendoza M , McNeill L ,
Perkins KM
.
JAMA Netw Open 2021 4 (10) e2128615
Detection and Characterization of Targeted Carbapenem-Resistant Healthcare-Associated Threats: Findings from The Antibiotic Resistance Laboratory Network, 2017-2019.
Sabour S
,
Huang JY
,
Bhatnagar A
,
Gilbert SE
,
Karlsson M
,
Lonsway D
,
Lutgring JD
,
Rasheed JK
,
Halpin AL
,
Stanton RA
,
Gumbis S
,
Elkins CA
,
Brown AC
.
Antimicrob Agents Chemother 2021 65 (12) Aac0110521
The Effect of Disinfectants on the Microbial Community on Environmental Healthcare Surfaces using Next Generation Sequencing.
Perry-Dow KA
,
de Man T
,
Halpin AL
,
Shams AM
,
Rose LJ
,
Noble-Wang JA
.
Am J Infect Control 2021 50 (1) 54-60
GAMMA: a tool for the rapid identification, classification, and annotation of translated gene matches from sequencing data.
Stanton RA
,
Vlachos N
,
Halpin AL
.
Bioinformatics 2021 38 (2) 546-548
Clostridium botulinum Type B Isolated From a Wound Botulism Case Due to Injection Drug Use Resembles Other Local Strains Originating From Hawaii.
Halpin JL
,
Foltz V
,
Dykes JK
,
Chatham-Stephens K
,
Lúquez C
.
Front Microbiol 2021 12 678473
Genomic Characterization of Strains From a Cluster of Infant Botulism Type A in a Small Town in Colorado, United States.
Gladney L
,
Halpin JL
,
Lúquez C
.
Front Microbiol 2021 12 688240
Framing Bacterial Genomics for Public Health(care).
Halpin AL
,
McDonald LC
,
Elkins CA
.
J Clin Microbiol 2021 59 (12) Jcm0013521
A Comparison of Less Invasive SARS-CoV-2 Diagnostic Specimens in Nursing Home Residents - Arkansas, June-August 2020.
Gable P
,
Huang JY
,
Gilbert SE
,
Bollinger S
,
Lyons AK
,
Sabour S
,
Surie D
,
Biedron C
,
Haney T ,
Beshearse E
,
Gregory CJ
,
Seely KA ,
Clemmons NS
,
Patil N , Kothari A , Gulley T , Garner K ,
Anderson K
,
Thornburg NJ
,
Halpin AL
,
McDonald LC
,
Kutty PK
,
Brown AC
.
Clin Infect Dis 2021 73 S58-S64
A Comprehensive Approach to Ending an Outbreak of Rare bla OXA-72 gene-positive Carbapenem-resistant Acinetobacter baumannii at a Community Hospital, Kansas City, MO, 2018
McKinsey DS , Gasser C , McKinsey JP , Ditto G , Agard A , Zellmer B , Poteete C , Vagnone PS , Dale JL , Bos J , Hahn R , Turabelidze G , Poiry M , Franklin P ,
Vlachos N
,
McAllister GA
,
Halpin AL
,
Glowicz J
,
Ham DC
,
Epstein L
.
Am J Infect Control 2021 49 (9) 1183-1185
The State of Microbiome Science at the Intersection of Infectious Diseases and Antimicrobial Resistance.
Ranallo RT ,
McDonald LC
,
Halpin AL
,
Hiltke T , Young VB .
J Infect Dis 2021 223 S187-S193
Characterization of Clostridioides difficile Isolates Available through the CDC & FDA Antibiotic Resistance Isolate Bank.
Paulick A
,
Adamczyk M
,
Anderson K
,
Vlachos N
,
Machado MJ
,
McAllister G
,
Korhonen L
,
Guh AY
,
Halpin AL
,
Rasheed JK
,
Karlsson M
,
Lutgring JD
,
Gargis AS
.
Microbiol Resour Announc 2021 10 (1)
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Page last reviewed:
Feb 1, 2024
Content source:
Public Health Genomics Branch in the Division of Blood Disorders and Public Health Genomics
,
National Center on Birth Defects and Developmental Disabilities
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