CDC-Authored Genomics and Precision Health Publications Database

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Last data update: Sep 03, 2024. (Total: 6282 publications)

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Records 1-30 (of 30 Records)

Query Trace: Gerner-Smidt P[original query]
Corrigendum: Whole Genome Sequencing: Bridging One-Health Surveillance of Foodborne Diseases. Gerner-Smidt P , Besser J , Concepción-Acevedo J , Folster JP , Huffman J , Joseph LA , Kucerova Z , Nichols MC , Schwensohn CA , Tolar B . Front Public Health 2019 7 365
PulseNet International Survey on the Implementation of Whole Genome Sequencing in Low and Middle-Income Countries for Foodborne Disease Surveillance. Davedow T , Carleton H , Kubota K , Palm D , Schroeder M , Gerner-Smidt P , Al-Jardani A , Chinen I , Kam KM , Smith AM , Nadon C . Foodborne Pathog Dis 2022 19 (5) 332-340
The Use of Whole-Genome Sequencing by the Federal Interagency Collaboration for Genomics for Food and Feed Safety in the United States. Stevens EL , Carleton HA , Beal J , Tillman GE , Lindsey RL , Lauer AC , Pightling A , Jarvis KG , Ottesen A , Ramachandran P , Hintz L , Katz LS , Folster JP , Whichard JM , Trees E , Timme RE , McDermott P , Wolpert B , Bazaco M , Zhao S , Lindley S , Bruce BB , Griffin PM , Brown E , Allard M , Tallent S , Irvin K , Hoffmann M , Wise M , Tauxe R , Gerner-Smidt P , Simmons M , Kissler B , Defibaugh-Chavez S , Klimke W , Agarwala R , Lindsay J , Cook K , Austerman SR , Goldman D , McGarry S , Hale KR , Dessai U , Musser SM , Braden C . J Food Prot 2022 85 (5) 755-772
Emergence and global spread of Listeria monocytogenes main clinical clonal complex. Moura A , Lefrancq N , Wirth T , Leclercq A , Borges V , Gilpin B , Dallman TJ , Frey J , Franz E , Nielsen EM , Thomas J , Pightling A , Howden BP , Tarr CL , Gerner-Smidt P , Cauchemez S , Salje H , Brisse S , Lecuit M . Sci Adv 2021 7 (49) eabj9805
Free-Living Aquatic Turtles as Sentinels of Salmonella spp. for Water Bodies. Hernandez SM , Maurer JJ , Yabsley MJ , Peters VE , Presotto A , Murray MH , Curry S , Sanchez S , Gerner-Smidt P , Hise K , Huang J , Johnson K , Kwan T , Lipp EK . Front Vet Sci 2021 8 674973
PulseNet and the Changing Paradigm of Laboratory-Based Surveillance for Foodborne Diseases. Kubota KA , Wolfgang WJ , Baker DJ , Boxrud D , Turner L , Trees E , Carleton HA , Gerner-Smidt P . Public Health Rep 2019 134 22s-28s
Advancing biological hazards risk assessment. Messens W , Hugas M , Afonso A , Aguilera J , Berendonk TU , Carattoli A , Dhollander S , Gerner-Smidt P , Kriz N , Liebana E , Medlock J , Robinson T , Stella P , Waltner-Toews D , Catchpole M . EFSA J 2019 17 e170714
Whole Genome Sequencing: Bridging One-Health Surveillance of Foodborne Diseases. Gerner-Smidt P , Besser J , Concepcion-Acevedo J , Folster JP , Huffman J , Joseph LA , Kucerova Z , Nichols MC , Schwensohn CA , Tolar B . Front Public Health 2019 7 172
Interpretation of Whole-Genome Sequencing for Enteric Disease Surveillance and Outbreak Investigation. Besser JM , Carleton HA , Trees E , Stroika SG , Hise K , Wise M , Gerner-Smidt P . Foodborne Pathog Dis 2019 16 (7) 504-512
PulseNet: Entering the Age of Next-Generation Sequencing. Ribot EM , Freeman M , Hise KB , Gerner-Smidt P . Foodborne Pathog Dis 2019 16 (7) 451-456
Use of Whole-Genome Sequencing for Food Safety and Public Health in the United States. Brown E , Dessai U , McGarry S , Gerner-Smidt P . Foodborne Pathog Dis 2019 16 (7) 441-450
Metagenomic Approaches for Public Health Surveillance of Foodborne Infections: Opportunities and Challenges. Carleton HA , Besser J , Williams-Newkirk AJ , Huang A , Trees E , Gerner-Smidt P . Foodborne Pathog Dis 2019 16 (7) 474-479
An Overview of PulseNet USA Databases. Tolar B , Joseph LA , Schroeder MN , Stroika S , Ribot EM , Hise KB , Gerner-Smidt P . Foodborne Pathog Dis 2019 16 (7) 457-462
The use of next generation sequencing for improving food safety: Translation into practice. Jagadeesan B , Gerner-Smidt P , Allard MW , Leuillet S , Winkler A , Xiao Y , Chaffron S , Van Der Vossen J , Tang S , Katase M , McClure P , Kimura B , Ching Chai L , Chapman J , Grant K . Food Microbiol 2019 79 96-115
An Assessment of Different Genomic Approaches for Inferring Phylogeny of Listeria monocytogenes. Henri C , Leekitcharoenphon P , Carleton HA , Radomski N , Kaas RS , Mariet JF , Felten A , Aarestrup FM , Gerner Smidt P , Roussel S , Guillier L , Mistou MY , Hendriksen RS . Front Microbiol 2017 8 2351
Next-Generation Sequencing Technologies and their Application to the Study and Control of Bacterial Infections. Besser J , Carleton HA , Gerner-Smidt P , Lindsey RL , Trees E . Clin Microbiol Infect 2017 24 (4) 335-341
PulseNet International: Vision for the implementation of whole genome sequencing (WGS) for global food-borne disease surveillance. Nadon C , Van Walle I , Gerner-Smidt P , Campos J , Chinen I , Concepcion-Acevedo J , Gilpin B , Smith AM , Man Kam K , Perez E , Trees E , Kubota K , Takkinen J , Nielsen EM , Carleton H . Euro Surveill 2017 22 (23)
Whole genome-based population biology and epidemiological surveillance of Listeria monocytogenes. Moura A , Criscuolo A , Pouseele H , Maury MM , Leclercq A , Tarr C , Bjorkman JT , Dallman T , Reimer A , Enouf V , Larsonneur E , Carleton H , Bracq-Dieye H , Katz LS , Jones L , Touchon M , Tourdjman M , Walker M , Stroika S , Cantinelli T , Chenal-Francisque V , Kucerova Z , Rocha EP , Nadon C , Grant K , Nielsen EM , Pot B , Gerner-Smidt P , Lecuit M , Brisse S . Nat Microbiol 2016 2 16185
Multiple-locus variable-number tandem repeat analysis for strain discrimination of non-O157 Shiga toxin-producing Escherichia coli. Timmons C , Trees E , Ribot EM , Gerner-Smidt P , LaFon P , Im S , Ma LM . J Microbiol Methods 2016 125 70-80
Implementation of Nationwide Real-time Whole-genome Sequencing to Enhance Listeriosis Outbreak Detection and Investigation. Jackson BR , Tarr C , Strain E , Jackson KA , Conrad A , Carleton H , Katz LS , Stroika S , Gould LH , Mody RK , Silk BJ , Beal J , Chen Y , Timme R , Doyle M , Fields A , Wise M , Tillman G , Defibaugh-Chavez S , Kucerova Z , Sabol A , Roache K , Trees E , Simmons M , Wasilenko J , Kubota K , Pouseele H , Klimke W , Besser J , Brown E , Allard M , Gerner-Smidt P . Clin Infect Dis 2016 63 (3) 380-6
Complete Genome Sequences of Two Shiga Toxin-Producing Escherichia coli Strains from Serotypes O119:H4 and O165:H25. Lindsey RL , Knipe K , Rowe L , Garcia-Toledo L , Loparev V , Juieng P , Trees E , Strockbine N , Stripling D , Gerner-Smidt P . Genome Announc 2015 3 (6)
Canonical Single Nucleotide Polymorphisms (SNPs) for High-Resolution Subtyping of Shiga-Toxin Producing Escherichia coli (STEC) O157:H7. Griffing SM , MacCannell DR , Schmidtke AJ , Freeman MM , Hyytia-Trees E , Gerner-Smidt P , Ribot EM , Bono JL . PLoS One 2015 10 (7) e0131967
Genome Sequences of 228 Shiga Toxin-Producing Escherichia coli Isolates and 12 Isolates Representing Other Diarrheagenic E. coli Pathotypes. Trees E , Strockbine N , Changayil S , Ranganathan S , Zhao K , Weil R , MacCannell D , Sabol A , Schmidtke A , Martin H , Stripling D , Ribot EM , Gerner-Smidt P . Genome Announc 2014 2 (4)
Draft Whole-Genome Sequences of Nine Non-O157 Shiga Toxin-Producing Escherichia coli Strains. Lindsey RL , Trees E , Sammons S , Loparev V , Frace M , Strockbine N , Sabol AL , Sowers E , Stripling D , Martin H , Knipe K , Rowe L , Gerner-Smidt P . Genome Announc 2014 2 (4)
Novel epidemic clones of Listeria monocytogenes, United States, 2011 Lomonaco S , Verghese B , Gerner-Smidt P , Tarr C , Gladney L , Joseph L , Katz L , Turnsek M , Frace M , Chen Y , Brown E , Meinersmann R , Berrang M , Knabel S . Emerg Infect Dis 2013 19 (1) 147-50
Genomic characterization of Listeria monocytogenes strains involved in a multistate listeriosis outbreak associated with cantaloupe in US. Laksanalamai P , Joseph LA , Silk BJ , Burall LS , Tarr CL , Gerner-Smidt P , Datta AR . PLoS One 2012 7 (7) e42448
Phylogeny of shiga toxin-producing Escherichia coli O157 isolated from cattle and clinically ill humans Bono JL , Smith TP , Keen JE , Harhay GP , McDaneld TG , Mandrell RE , Jung WK , Besser TE , Gerner-Smidt P , Bielaszewska M , Karch H , Clawson ML . Mol Biol Evol 2012 29 (8) 2047-62
Comparative genomics of Vibrio cholerae from Haiti, Asia, and Africa. Reimer AR , Van Domselaar G , Stroika S , Walker M , Kent H , Tarr C , Talkington D , Rowe L , Olsen-Rasmussen M , Frace M , Sammons S , Dahourou GA , Boncy J , Smith AM , Mabon P , Petkau A , Graham M , Gilmour MW , Gerner-Smidt P . Emerg Infect Dis 2011 17 (11) 2113-2121
Subtyping Salmonella enterica serovar enteritidis isolates from different sources by using sequence typing based on virulence genes and clustered regularly interspaced short palindromic repeats (CRISPRs). Liu F , Kariyawasam S , Jayarao BM , Barrangou R , Gerner-Smidt P , Ribot EM , Knabel SJ , Dudley EG . Appl Environ Microbiol 2011 77 (13) 4520-6
Novel virulence gene and CRISPR multilocus sequence typing scheme for subtyping the major serovars of Salmonella enterica subspecies enterica Liu F , Barrangou R , Gerner-Smidt P , Ribot EM , Knabel SJ , Dudley EG . Appl Environ Microbiol 2011 77 (6) 1946-56