CDC-Authored Genomics and Precision Health Publications Database
Last data update: Apr 18, 2025. (Total: 6649 publications)
| Query Trace: Fields PI[original query] |
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| Salmonella serotypes in the genomic era: simplified Salmonella serotype interpretation from DNA sequence data
Deng X , Li S , Xu T , Zhou Z , Moore MM , Timme R , Zhao S , Lane C , Dinsmore BA , Weill F , Fields PI . Appl Environ Microbiol 2025 e0260024 
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| Genomic perspective on the bacillus causing paratyphoid B fever
Hawkey J , Frézal L , Tran Dien A , Zhukova A , Brown D , Chattaway MA , Simon S , Izumiya H , Fields PI , De Lappe N , Kaftyreva L , Xu X , Isobe J , Clermont D , Njamkepo E , Akeda Y , Issenhuth-Jeanjean S , Makarova M , Wang Y , Hunt M , Jenkins BM , Ravel M , Guibert V , Serre E , Matveeva Z , Fabre L , Cormican M , Yue M , Zhu B , Morita M , Iqbal Z , Silva Nodari C , Pardos de la Gandara M , Weill FX . Nat Commun 2024 15 (1) 10143
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| A global genomic analysis of Salmonella Concord reveals lineages with high antimicrobial resistance in Ethiopia
Cuypers WL , Meysman P , Weill FX , Hendriksen RS , Beyene G , Wain J , Nair S , Chattaway MA , Perez-Sepulveda BM , Ceyssens PJ , de Block T , Lee WWY , Pardos de la Gandara M , Kornschober C , Moran-Gilad J , Veldman KT , Cormican M , Torpdahl M , Fields PI , Černý T , Hardy L , Tack B , Mellor KC , Thomson N , Dougan G , Deborggraeve S , Jacobs J , Laukens K , Van Puyvelde S . Nat Commun 2023 14 (1) 3517
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| Evaluation of a Bead-Based Salmonella Molecular Serotyping Method for Salmonella Isolated from Food and Environmental Samples.
Moore MM , Nucci MJ , Madson SM , Wagley GS , Keys CE , Brown EW , McQuiston JR , Fields PI . J Food Prot 2019 82 (11) 1973-1987
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| SeqSero2: rapid and improved Salmonella serotype determination using whole genome sequencing data.
Zhang S , Den-Bakker HC , Li S , Chen J , Dinsmore BA , Lane C , Lauer AC , Fields PI , Deng X . Appl Environ Microbiol 2019 85 (23)
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| Zoonotic Source Attribution of Salmonella enterica Serotype Typhimurium Using Genomic Surveillance Data, United States.
Zhang S , Li S , Gu W , den Bakker H , Boxrud D , Taylor A , Roe C , Driebe E , Engelthaler DM , Allard M , Brown E , McDermott P , Zhao S , Bruce BB , Trees E , Fields PI , Deng X . Emerg Infect Dis 2019 25 (1) 82-91 |
| Comparative genomics of Salmonella enterica serovar Montevideo reveals lineage-specific gene differences that may influence ecological niche association.
Nguyen SV , Harhay DM , Bono JL , Smith TPL , Fields PI , Dinsmore BA , Santovenia M , Wang R , Bosilevac JM , Harhay GP . Microb Genom 2018 4 (8)
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| Complete, Closed Genome Sequences of 10 Salmonella enterica subsp. enterica Serovar Typhimurium Strains Isolated from Human and Bovine Sources.
Nguyen SV , Harhay DM , Bono JL , Smith TP , Fields PI , Dinsmore BA , Santovenia M , Kelley CM , Wang R , Bosilevac JM , Harhay GP . Genome Announc 2016 4 (6) |
| Complete and Closed Genome Sequences of 10 Salmonella enterica subsp. enterica Serovar Anatum Isolates from Human and Bovine Sources.
Nguyen SV , Harhay DM , Bono JL , Smith TP , Fields PI , Dinsmore BA , Santovenia M , Kelley CM , Wang R , Bosilevac JM , Harhay GP . Genome Announc 2016 4 (3) |
| Complete Closed Genome Sequences of Salmonella enterica subsp. enterica Serotypes Anatum, Montevideo, Typhimurium, and Newport, Isolated from Beef, Cattle, and Humans.
Harhay DM , Bono JL , Smith TP , Fields PI , Dinsmore BA , Santovenia M , Kelley CM , Wang R , Harhay GP . Genome Announc 2016 4 (1) |
| Salmonella serotype determination utilizing high-throughput genome sequencing data.
Zhang S , Yin Y , Jones MB , Zhang Z , Deatherage Kaiser BL , Dinsmore BA , Fitzgerald C , Fields PI , Deng X . J Clin Microbiol 2015 53 (5) 1685-92 |
| Comparative analysis of subtyping methods against a whole-genome-sequencing standard for Salmonella enterica serotype Enteritidis.
Deng X , Shariat N , Driebe EM , Roe CC , Tolar B , Trees E , Keim P , Zhang W , Dudley EG , Fields PI , Engelthaler DM . J Clin Microbiol 2014 53 (1) 212-8 |
| Genomic epidemiology of Salmonella enterica serotype Enteritidis based on population structure of prevalent lineages.
Deng X , Desai PT , den Bakker HC , Mikoleit M , Tolar B , Trees E , Hendriksen RS , Frye JG , Porwollik S , Weimer BC , Wiedmann M , Weinstock GM , Fields PI , McClelland M . Emerg Infect Dis 2014 20 (9) 1481-9 |
| Campylobacter fetus subsp. testudinum subsp. nov., isolated from humans and reptiles.
Fitzgerald C , Tu ZC , Patrick M , Stiles T , Lawson AJ , Santovenia M , Gilbert MJ , van Bergen M , Joyce K , Pruckler J , Stroika S , Duim B , Miller WG , Loparev VL , Sinnige JC , Fields PI , Tauxe RV , Blaser MJ , Wagenaar JA . Int J Syst Evol Microbiol 2014 64 2944-2948 |
| Multilocus sequence typing confirms wild birds as the source of a Campylobacter outbreak associated with the consumption of raw peas.
Kwan PS , Xavier C , Santovenia M , Pruckler J , Stroika S , Joyce K , Gardner T , Fields PI , McLaughlin J , Tauxe RV , Fitzgerald C . Appl Environ Microbiol 2014 80 (15) 4540-6 |
| Genome Sequence of Salmonella enterica Serotype Tennessee Strain CDC07-0191, Implicated in the 2006-2007 Multistate Food-Borne Outbreak Linked to Peanut Butter in the United States.
Deng X , Salazar JK , Frezet S , Maccannell D , Ribot EM , Fields PI , Fricke WF , Zhang W . Genome Announc 2013 1 (3) |
| Variable expression of O:61 in Salmonella group C2
Mikoleit M , Van Duyne MS , Halpin J , McGlinchey B , Fields PI . J Clin Microbiol 2012 50 (12) 4098-9 |
| Molecular determination of H antigens of Salmonella by use of a microsphere-based liquid array.
McQuiston JR , Waters RJ , Dinsmore BA , Mikoleit ML , Fields PI . J Clin Microbiol 2010 49 (2) 565-573 |
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