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CDC-Authored Genomics and Precision Health Publications Database|Home|PHGKB

CDC-Authored Genomics and Precision Health Publications Database


Last data update: Sep 25, 2023. (Total: 4416 publications since 2011)
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Records 1-30 (of 51 Records)
Query Trace: Fan X[original query]
Molecular evolution and antigenic drift of type 3 iVDPVs excreted from a patient with immunodeficiency in Ningxia, China.
Fan Q , Ma J , Li X , Jorba J , Yuan F , Zhu H , Hu L , Song Y , Wang D , Zhu S , Yan D , Chen H , Xu W , Zhang Y .
J Med Virol 2023 95 (1) e28215
Associations Between Eight Earth Observation-Derived Climate Variables and Enteropathogen Infection: An Independent Participant Data Meta-Analysis of Surveillance Studies With Broad Spectrum Nucleic Acid Diagnostics.
Colston JM , Zaitchik BF , Badr HS , Burnett E , Ali SA , Rayamajhi A , Satter SM , Eibach D , Krumkamp R , May J , Chilengi R , Howard LM , Sow SO , JahangirHossain M , Saha D , ImranNisar M , Zaidi AKM , Kanungo S , Mandomando I , Faruque ASG , Kotloff KL , Levine MM , Breiman RF , Omore R , Page N , Platts-Mills JA , Ashorn U , Fan YM , Shrestha PS , Ahmed T , Mduma E , Yori PP , Bhutta Z , Bessong P , Olortegui MP , Lima AAM , Kang G , Humphrey J , Prendergast AJ , Ntozini R , Okada K , Wongboot W , Gaensbauer J , Melgar MT , Pelkonen T , Freitas CM , Kosek MN .
Geohealth 2022 6 (1) e2021GH000452
Enhanced fitness of SARS-CoV-2 variant of concern Alpha but not Beta.
Ulrich L , Halwe NJ , Taddeo A , Ebert N , Schn J , Devisme C , Treb BS , Hoffmann B , Wider M , Fan X , Bekliz M , Essaidi-Laziosi M , Schmidt ML , Niemeyer D , Corman VM , Kraft A , Godel A , Laloli L , Kelly JN , Calderon BM , Breithaupt A , Wylezich C , Veiga IB , Gultom M , Osman S , Zhou B , Adea K , Meyer B , Eberhardt C , Thomann L , Gsell M , Labroussaa F , Jores J , Summerfield A , Drosten C , Eckerle IA , Wentworth DE , Dijkman R , Hoffmann D , Thiel V , Beer M , Benarafa C .
Nature 2021 602 (7896) 307-313 type
N-glycosylation profiles of the SARS-CoV-2 spike D614G mutant and its ancestral protein characterized by advanced mass spectrometry.
Wang D , Zhou B , Keppel TR , Solano M , Baudys J , Goldstein J , Finn MG , Fan X , Chapman AP , Bundy JL , Woolfitt AR , Osman SH , Pirkle JL , Wentworth DE , Barr JR .
Sci Rep 2021 11 (1) 23561 type
SARS-CoV-2 spike D614G change enhances replication and transmission.
Zhou B , ThiNhuThao T , Hoffmann D , Taddeo A , Ebert N , Labroussaa F , Pohlmann A , King J , Steiner S , Kelly JN , Portmann J , Halwe NJ , Ulrich L , Treb BS , Fan X , Hoffmann B , Wang L , Thomann L , Lin X , Stalder H , Pozzi B , deBrot S , Jiang N , Cui D , Hossain J , Wilson M , Keller M , Stark TJ , Barnes JR , Dijkman R , Jores J , Benarafa C , Wentworth DE , Thiel V , Beer M .
Nature 2021 592 (7852) 122-127 type
Metagenomic sequencing generates the whole genomes of porcine rotavirus A, C, and H from the United States.
Hull JJA , Qi M , Montmayeur AM , Kumar D , Velasquez DE , Moon SS , Magaa LC , Betrapally N , Ng TFF , Jiang B , Marthaler D .
PLoS One 2020 15 (12) e0244498
The effect of variant interference on de novo assembly for viral deep sequencing.
Castro CJ , Marine RL , Ramos E , Ng TFF .
BMC Genomics 2020 21 (1) 421
Comparison of Illumina MiSeq and the Ion Torrent PGM and S5 platforms for whole-genome sequencing of picornaviruses and caliciviruses.
Marine RL , Magana LC , Castro CJ , Zhao K , Montmayeur AM , Schmidt A , Diez-Valcarce M , FanNg TF , Vinje J , Burns CC , AllanNix W , Rota PA , Oberste MS .
J Virol Methods 2020 280 113865
Analysis of the reiteration regions (R1 to R5) of varicella-zoster virus.
Jensen NJ , Depledge DP , Ng TFF , Leung J , Quinlivan M , Radford KW , Folster J , Tseng HF , LaRussa P , Jacobsen SJ , Breuer J , Schmid DS .
Virology 2020 546 38-50
Antifungal triazole posaconazole targets an early stage of the parechovirus A3 life cycle.
Rhoden E , Ng TFF , Campagnoli R , Nix WA , Konopka-Anstadt J , Selvarangan R , Briesach L , Oberste MS , Weldon WC .
Antimicrob Agents Chemother 2019 64 (3)
Mutations in the Neuraminidase-Like Protein of Bat Influenza H18N11 Virus Enhance Virus Replication in Mammalian Cells, Mice, and Ferrets.
Zhong G , Fan S , Hatta M , Nakatsu S , Walters KB , Lopes TJS , Wang JI , Ozawa M , Karasin A , Li Y , Tong S , Donis RO , Neumann G , Kawaoka Y .
J Virol 2019 94 (5)
Nearly Complete Genome Sequence of an Echovirus 30 Strain from a Cluster of Aseptic Meningitis Cases in California, September 2017.
Pan CY , Huynh T , Padilla T , Chen A , Ng TFF , Marine RL , Castro CJ , Nix WA , Wadford DA .
Microbiol Resour Announc 2019 8 (44)
Pan-viral serology implicates enteroviruses in acute flaccid myelitis.
Schubert RD , Hawes IA , Ramachandran PS , Ramesh A , Crawford ED , Pak JE , Wu W , Cheung CK , O'Donovan BD , Tato CM , Lyden A , Tan M , Sit R , Sowa GA , Sample HA , Zorn KC , Banerji D , Khan LM , Bove R , Hauser SL , Gelfand AA , Johnson-Kerner BL , Nash K , Krishnamoorthy KS , Chitnis T , Ding JZ , McMillan HJ , Chiu CY , Briggs B , Glaser CA , Yen C , Chu V , Wadford DA , Dominguez SR , Ng TFF , Marine RL , Lopez AS , Nix WA , Soldatos A , Gorman MP , Benson L , Messacar K , Konopka-Anstadt JL , Oberste MS , DeRisi JL , Wilson MR .
Nat Med 2019 25 (11) 1748-1752
NS2B/NS3 mutations enhance the infectivity of genotype I Japanese encephalitis virus in amplifying hosts.
Fan YC , Liang JJ , Chen JM , Lin JW , Chen YY , Su KH , Lin CC , Tu WC , Chiou MT , Ou SC , Chang GJ , Lin YL , Chiou SS .
PLoS Pathog 2019 15 (8) e1007992
Outbreak of diarrhoea in piglets caused by novel rotavirus genotype G4P[49] in north-western district of Bangladesh, February 2014.
Sarkar S , DiohEsona M , Gautam R , Castro CJ , Ng TFF , Haque W , Khan SU , Hossain ME , Rahman MZ , Gurley ES , Kennedy ED , Bowen MD , Parashar UD , Rahman M .
Transbound Emerg Dis 2019 67 (1) 442-449
Antibodies to Enteroviruses in Cerebrospinal Fluid of Patients with Acute Flaccid Myelitis.
Mishra N , Ng TFF , Marine RL , Jain K , Ng J , Thakkar R , Caciula A , Price A , Garcia JA , Burns JC , Thakur KT , Hetzler KL , Routh JA , Konopka-Anstadt JL , Nix WA , Tokarz R , Briese T , Oberste MS , Lipkin WI .
mBio 2019 10 (4)
Characterization of Novel Reoviruses [Wad Medani virus (Orbivirus) and Kundal (Coltivirus)] collected from Hyalomma antolicum ticks in India during CCHF surveillance.
Yadav PD , Whitmer SLM , Sarkale P , Ng TFF , Goldsmith CS , Nyayanit DA , Esona MD , Shrivastava-Ranjan P , Lakra R , Pardeshi P , Majumdar TD , Francis A , Klena JD , Nichol ST , Stroher U , Mourya D .
J Virol 2019 93 (13)
Strengthening laboratory surveillance of viral pathogens: Experiences and lessons learned building next-generation sequencing capacity in Ghana.
Marine RL , Ntim NAA , Castro CJ , Attiku KO , Pratt D , Duker E , Agbosu E , Ng TFF , Gatei W , Obodai E , Odoom JK , Walker CL , Rota PA , Oberste MS , Ampofo WK , Balajee SA .
Int J Infect Dis 2019 81 231-234
Characterization of the Genome Sequences of Enterovirus C109 from Two Respiratory Disease Cases in Florida, 2016.
Ng TFF , Yglesias JA , Stevenson-Yuen TA , Wolfe CM , Cone MR , Heberlein-Larson LA , Maher K , Rogers S , Chern SWW , Montmayeur A , Castro C , Nix WA .
Microbiol Resour Announc 2018 7 (3)
Genome Sequences of Rhinovirus Genotype C56 Detected in Three Patients with Acute Respiratory Illness, California, 2016 to 2017.
Pan CY , Yagi S , Padilla T , FeiFanNg T , Marine RL , Nix WA , Wadford DA .
Microbiol Resour Announc 2018 7 (7)
A Population-Based Surveillance Study of Shared Genotypes of Escherichia coli Isolates from Retail Meat and Suspected Cases of Urinary Tract Infections.
Yamaji R , Friedman CR , Rubin J , Suh J , Thys E , McDermott P , Hung-Fan M , Riley LW .
mSphere 2018 3 (4)
Genetic diversity of human sapovirus across the Americas.
Diez-Valcarce M , Castro CJ , Marine RL , Halasa N , Mayta H , Saito M , Tsaknaridis L , Pan CY , Bucardo F , Becker-Dreps S , Lopez MR , Magana LC , Ng TFF , Vinje J .
J Clin Virol 2018 104 65-72
Taxonomy of the family Arenaviridae and the order Bunyavirales: update 2018.
Maes P , Alkhovsky SV , Bao Y , Beer M , Birkhead M , Briese T , Buchmeier MJ , Calisher CH , Charrel RN , Choi IR , Clegg CS , delaTorre JC , Delwart E , DeRisi JL , DiBello PL , DiSerio F , Digiaro M , Dolja VV , Drosten C , Druciarek TZ , Du J , Ebihara H , Elbeaino T , Gergerich RC , Gillis AN , Gonzalez JJ , Haenni AL , Hepojoki J , Hetzel U , Ho T , Hong N , Jain RK , JansenvanVuren P , Jin Q , Jonson MG , Junglen S , Keller KE , Kemp A , Kipar A , Kondov NO , Koonin EV , Kormelink R , Korzyukov Y , Krupovic M , Lambert AJ , Laney AG , LeBreton M , Lukashevich IS , Marklewitz M , Markotter W , Martelli GP , Martin RR , Mielke-Ehret N , Muhlbach HP , Navarro B , Ng TFF , Nunes MRT , Palacios G , Paweska JT , Peters CJ , Plyusnin A , Radoshitzky SR , Romanowski V , Salmenpera P , Salvato MS , Sanfacon H , Sasaya T , Schmaljohn C , Schneider BS , Shirako Y , Siddell S , Sironen TA , Stenglein MD , Storm N , Sudini H , Tesh RB , Tzanetakis IE , Uppala M , Vapalahti O , Vasilakis N , Walker PJ , Wang G , Wang L , Wang Y , Wei T , Wiley MR , Wolf YI , Wolfe ND , Wu Z , Xu W , Yang L , Yang Z , Yeh SD , Zhang YZ , Zheng Y , Zhou X , Zhu C , Zirkel F , Kuhn JH .
Arch Virol 2018 163 (8) 2295-2310
Taxonomy of the order Mononegavirales: update 2018.
Amarasinghe GK , ArechigaCeballos NG , Banyard AC , Basler CF , Bavari S , Bennett AJ , Blasdell KR , Briese T , Bukreyev A , Cai Y , Calisher CH , CamposLawson C , Chandran K , Chapman CA , Chiu CY , Choi KS , Collins PL , Dietzgen RG , Dolja VV , Dolnik O , Domier LL , Durrwald R , Dye JM , Easton AJ , Ebihara H , Echevarria JE , Fooks AR , Formenty PBH , Fouchier RAM , Freuling CM , Ghedin E , Goldberg TL , Hewson R , Horie M , Hyndman TH , Jiang D , Kityo R , Kobinger GP , Kondo H , Koonin EV , Krupovic M , Kurath G , Lamb RA , Lee B , Leroy EM , Maes P , Maisner A , Marston DA , Mor SK , Muller T , Muhlberger E , Ramirez VMN , Netesov SV , Ng TFF , Nowotny N , Palacios G , Patterson JL , Paweska JT , Payne SL , Prieto K , Rima BK , Rota P , Rubbenstroth D , Schwemmle M , Siddell S , Smither SJ , Song Q , Song T , Stenglein MD , Stone DM , Takada A , Tesh RB , Thomazelli LM , Tomonaga K , Tordo N , Towner JS , Vasilakis N , Vazquez-Moron S , Verdugo C , Volchkov VE , Wahl V , Walker PJ , Wang D , Wang LF , Wellehan JFX , Wiley MR , Whitfield AE , Wolf YI , Ye G , Zhang YZ , Kuhn JH .
Arch Virol 2018 163 (8) 2283-2294
Whole-Genome Sequence of Human Rhinovirus C47, Isolated from an Adult Respiratory Illness Outbreak in Butte County, California, 2017.
Pan CY , Padilla T , Yagi S , Lewis LS , Ng TFF , Marine RL , Nix WA , Wadford DA .
Genome Announc 2018 6 (5)
Near-Complete Genome Sequences of Several New Norovirus Genogroup II Genotypes.
Chhabra P , Aswath K , Collins N , Ahmed T , Olortegui MP , Kosek M , Cebelinski E , Cooper PJ , Bucardo F , Lopez MR , Castro CJ , Marine RL , Ng TFF , Vinje J .
Genome Announc 2018 6 (6)
Complete Genome Sequences of Mumps and Measles Virus Isolates from Three States in the United States.
Magaña Laura C, Espinosa Alex, Marine Rachel L, Ng Terry Fei Fan, Castro Christina J, Montmayeur Anna M, Hacker Jill K, Scott Samantha, Whyte Thomas, Bankamp Bettina, Oberste M Steven, Rota Paul A.Genome announcements 2017 Aug (33) .
Genome announcements 2017 Aug (33)
A case control study on family history as a risk factor for herpes zoster and associated outcomes, Beijing, China.
Suo Luodan, Lu Li, Li Juan, Sun Mu, Wang Haihong, Peng Xinhui, Yang Fan, Pang Xinghuo, Marin Mona, Wang Chengbin. BMC infectious diseases 2017 May 17(1) 334 .
BMC infectious diseases 2017 May 17(1) 334
U50: A New Metric for Measuring Assembly Output Based on Non-Overlapping, Target-Specific Contigs.
Castro Christina J, Ng Terry Fei Fan.Journal of computational biology : a journal of computational molecular cell biology 2017 Apr .
Journal of computational biology : a journal of computational molecular cell biology 2017 Apr
Evolution and Transmission of Carbapenem-Resistant Klebsiella pneumoniae Expressing the blaOXA-232 Gene During an Institutional Outbreak Associated With Endoscopic Retrograde Cholangiopancreatography.
Yang Shangxin, Hemarajata Peera, Hindler Janet, Li Fan, Adisetiyo Helty, Aldrovandi Grace, Sebra Robert, Kasarskis Andrew, MacCannell Duncan, Didelot Xavier, Russell Dana, Rubin Zachary, Humphries Romney.Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2017 Apr (7) 894-901 .
Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2017 Apr (7) 894-901
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