CDC-Authored Genomics and Precision Health Publications Database

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Last data update: Mar 17, 2025. (Total: 6591 publications)

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Records 1-30 (of 144 Records)

Query Trace: E. coli[original query]
Insights into global antimicrobial resistance dynamics through the sequencing of enteric bacteria from U.S. international travelers Sridhar S , Worby CJ , Bronson RA , Turbett SE , Oliver EH , Shea T , Rao SR , Sanchez V , Becker MV , Kogut L , Slater D , Harris JB , Walters MS , Walker AT , Knouse MC , Leung DT , Kelly P , Ryan ET , LaRocque RC , Earl AM . bioRxiv 2025
Characterization of carbapenem-resistant Enterobacterales and Pseudomonas aeruginosa carrying multiple carbapenemase genes-Antimicrobial Resistance Laboratory Network, 2018-2022 Sabour S , Harrington KRV , Martinson E , Bhatnagar AS , Huang JY , Duffy D , Bantle K , Lutgring JD , Karlsson M , Baca S . J Clin Microbiol 2024 e0122024
Conditional expression of flagellar motility, curli fimbriae, and biofilms in Shiga toxin- producing Escherichia albertii Carter MQ , Carychao D , Lindsey RL . Front Microbiol 2024 15 1456637
Machine learning to attribute the source of Campylobacter infections in the United States: a retrospective analysis of national surveillance data Pascoe B , Futcher G , Pensar J , Bayliss SC , Mourkas E , Calland JK , Hitchings MD , Joseph LA , Lane CG , Greenlee T , Arning N , Wilson DJ , Jolley KA , Corander J , Maiden MCJ , Parker CT , Cooper KK , Rose EB , Hiett K , Bruce BB , Sheppard SK . J Infect 2024 106265
Shiga toxin-producing Escherichia coli O157:H7 outbreak associated with school field trips at a farm animal exhibit-Tennessee, September-October 2023 Thomas CM , Foster A , Boop S , Kirschke D , Mooney H , Reid I , May AS , Mullins H , Garman KN , Golwalkar M , Marr JH , Orejuela K , Ripley D , Rasnic R , Terrell E , Durso LM , Schaffner W , Jones TF , Fill MA , Dunn JR . Zoonoses Public Health 2024
Potentially zoonotic enteric infections in gorillas and Chimpanzees, Cameroon and Tanzania Strahan EK , Witherbee J , Bergl R , Lonsdorf EV , Mwacha D , Mjungu D , Arandjelovic M , Ikfuingei R , Terio K , Travis DA , Gillespie TR . Emerg Infect Dis 2024 30 (3) 577-580
Multicenter evaluation of BioCode GPP for syndromic molecular detection of gastrointestinal pathogens from stool specimens Knoth C , Humphries R , Johnson JK , Patel A , Lima A , Silbert S , Vinjé J . J Clin Microbiol 2024 e0154523
Erratum for Pattabiraman and Bopp, Draft Whole-Genome Sequences of 10 Serogroup O6 Enterotoxigenic Escherichia coli Strains. Pattabiraman V , Bopp CA . Genome Announc 2016 4 (3)
Correction for Pattabiraman and Bopp, Draft Whole-Genome Sequences of Nine Enterotoxigenic Escherichia coli Serogroup O6 Strains. Pattabiraman V , Bopp CA . Genome Announc 2016 4 (3)
Multistate nontyphoidal Salmonella and Shiga toxin-producing Escherichia coli outbreaks linked to international travel - United States, 2017-2020 Habrun CA , Birhane MG , François Watkins LK , Benedict K , Bottichio L , Nemechek K , Tolar B , Schroeder MN , Chen JC , Caidi H , Robyn M , Nichols M . Epidemiol Infect 2024 1-33
Genomic and phenotypic characterization of shiga toxin-producing Escherichia albertii strains isolated from wild birds in a major agricultural region in California Carter MQ , Quiñones B , He X , Pham A , Carychao D , Cooley MB , Lo CC , Chain PSG , Lindsey RL , Bono JL . Microorganisms 2023 11 (11)
Identification and characterization of ten Escherichia coli strains encoding novel shiga toxin 2 subtypes, Stx2n as well as Stx2j, Stx2m, and Stx2o, in the United States Lindsey RL , Prasad A , Feldgarden M , Gonzalez-Escalona N , Kapsak C , Klimke W , Melton-Celsa A , Smith P , Souvorov A , Truong J , Scheutz F . Microorganisms 2023 11 (10)
Laboratory criteria for exclusion and readmission of potentially infectious persons in sensitive settings in the age of culture-independent diagnostic tests: Report of a multidisciplinary workgroup Besser J , Singer R , Jervis R , Boxrud D , Smith K , Daly ER . J Food Prot 2023 86 (12) 100173
Gut microbiome perturbation, antibiotic resistance, and Escherichia coli strain dynamics associated with international travel: a metagenomic analysis Worby CJ , Sridhar S , Turbett SE , Becker MV , Kogut L , Sanchez V , Bronson RA , Rao SR , Oliver E , Walker AT , Walters MS , Kelly P , Leung DT , Knouse MC , Hagmann SHF , Harris JB , Ryan ET , Earl AM , LaRocque RC . Lancet Microbe 2023 4 (10) e790-e799
Investigation of multidrug-resistant plasmids from carbapenemase-producing Klebsiella pneumoniae clinical isolates from Pakistan Lascols C , Cherney B , Conley AB , Rishishwar L , Crawford MA , Morse SA , Fisher DJ , Anderson K , Hodge DR , Pillai SP , Hughes MA , Khan E , Sue D . Front Microbiol 2023 14 1192097
O-antigen diversification masks identification of highly pathogenic shiga toxin-producing Escherichia coli O104:H4-like strains Lang C , Fruth A , Campbell IW , Jenkins C , Smith P , Strockbine N , Weill FX , Nübel U , Grad YH , Waldor MK , Flieger A . Microbiol Spectr 2023 11 (3) e0098723
Detecting national human enteric disease outbreaks linked to animal contact in the United States of America. Nichols M , Stevenson L , Koski L , Basler C , Wise M , Whitlock L , Francois Watkins L , Friedman CR , Chen J , Tagg K , Joseph L , Caidi H , Patel K , Tolar B , Hise K , Classon A , Ceric O , Reimschuessel R , Williams IT . Rev Sci Tech 2020 39 (2) 471-480
Evaluation of core genome and whole genome multilocus sequence typing schemes for Campylobacter jejuni and Campylobacter coli outbreak detection in the USA Joseph LA , Griswold T , Vidyaprakash E , Im SB , Williams GM , Pouseele HA , Hise KB , Carleton HA . Microb Genom 2023 9 (5)
Epidemiology of enteroaggregative, enteropathogenic, and shiga toxin-producing escherichia coli among children aged <5 years in 3 countries in Africa, 2015-2018: Vaccine Impact on Diarrhea in Africa (VIDA) Study Ochieng JB , Powell H , Sugerman CE , Omore R , Ogwel B , Juma J , Awuor AO , Sow SO , Sanogo D , Onwuchekwa U , Keita AM , Traoré A , Badji H , Hossain MJ , Jones JCM , Kasumba IN , Nasrin D , Roose A , Liang Y , Jamka LP , Antonio M , Platts-Mills JA , Liu J , Houpt ER , Mintz ED , Hunsperger E , Onyango CO , Strockbine N , Widdowson MA , Verani JR , Tennant SM , Kotloff KL . Clin Infect Dis 2023 76 S77-s86
First Known Report of mcr-Harboring Enterobacteriaceae in the Dominican Republic. Perdomo A , Webb HE , Bugarel M , Friedman CR , Francois Watkins LK , Loneragan GH , Calle A . Int J Environ Res Public Health 2023 20 (6)
Fecal indicators and antibiotic resistance genes exhibit diurnal trends in the Chattahoochee River: Implications for water quality monitoring. Nguyen KH , Smith S , Roundtree A , Feistel DJ , Kirby AE , Levy K , Mattioli MC . Front Microbiol 2022 13 1029176
Changing Diagnostic Testing Practices for Foodborne Pathogens, Foodborne Diseases Active Surveillance Network, 2012-2019. Ray LC , Griffin PM , Wymore K , Wilson E , Hurd S , LaClair B , Wozny S , Eikmeier D , Nicholson C , Burzlaff K , Hatch J , Fankhauser M , Kubota K , Huang JY , Geissler A , Payne DC , Tack DM . Open Forum Infect Dis 2022 9 (8) ofac344
Use of Large-Scale Genomics to Identify the Role of Animals and Foods as Potential Sources of Extraintestinal Pathogenic Escherichia coli That Cause Human Illness. Harrison L , Tyson GH , Strain E , Lindsey RL , Strockbine N , Ceric O , Fortenberry GZ , Harris B , Shaw S , Tillman G , Zhao S , Dessai U . Foods 2022 11 (13)
Litter Commensal Bacteria Can Limit the Horizontal Gene Transfer of Antimicrobial Resistance to Salmonella in Chickens. Oladeinde A , Abdo Z , Zwirzitz B , Woyda R , Lakin SM , Press MO , Cox NA , Thomas JCth , Looft T , Rothrock MJJr , Zock G , Plumblee Lawrence J , Cudnik D , Ritz C , Aggrey SE , Liachko I , Grove JR , Wiersma C . Appl Environ Microbiol 2022 88 (9) e0251721
PgtE Enzyme of Salmonella enterica Shares the Similar Biological Roles to Plasminogen Activator (Pla) in Interacting With DEC-205 (CD205), and Enhancing Host Dissemination and Infectivity by Yersinia pestis. Li Q , Ye C , Zhao F , Li W , Zhu S , Lv Y , Park CG , Zhang Y , Jiang LY , Yang K , He Y , Cai H , Zhang S , Ding HH , Njiri OA , Tembo JM , Alkraiem AA , Li AY , Sun ZY , Li W , Yan MY , Kan B , Huo X , Klena JD , Skurnik M , Anisimov AP , Gao X , Han Y , Yang RF , Xiamu X , Wang Y , Chen H , Chai B , Sun Y , Yuan J , Chen T . Front Immunol 2022 13 791799
Genome Sequence of Escherichia coli Isolated from an Adult in Kibera, an Urban Informal Settlement in Nairobi, Kenya. Kikwai GK , Juma B , Nindo F , Ochieng C , Wamola N , Mbogo K , Call DR , Hunsperger E . Microbiol Resour Announc 2022 11 (4) e0124121
Effective Oral RNA Interference (RNAi) Administration to Adult Anopheles gambiae Mosquitoes. Taracena M , Hunt C , Pennington P , Andrew D , Jacobs-Lorena M , Dotson E , Wells M . J Vis Exp 2022 (181)
Burden of Diarrheagenic Escherichia coli in Santa Rosa, Guatemala in active health-services surveillance during 2008-2009 and 2014-2015. Jarquin C , Morales O , McCracken JP , Lopez MR , Lopez B , Reyes L , Gmez GA , Bryan JP , Peruski LF , Pattabiraman V , Parsons MB . Trop Med Int Health 2022 27 (4) 408-417
Epidemiology of extended-spectrum β-lactamase-producing Enterobacterales in five US sites participating in the Emerging Infections Program, 2017. Duffy N , Karlsson M , Reses HE , Campbell D , Daniels J , Stanton RA , Janelle SJ , Schutz K , Bamberg W , Rebolledo PA , Bower C , Blakney R , Jacob JT , Phipps EC , Flores KG , Dumyati G , Kopin H , Tsay R , Kainer MA , Muleta D , Byrd-Warner B , Grass JE , Lutgring JD , Rasheed JK , Elkins CA , Magill SS , See I . Infect Control Hosp Epidemiol 2022 43 (11) 1-9
Molecular Characterization of Carbapenem-Resistant Enterobacterales Collected in the United States. Karlsson M , Lutgring JD , Ansari U , Lawsin A , Albrecht V , McAllister G , Daniels J , Lonsway D , McKay S , Beldavs Z , Bower C , Dumyati G , Gross A , Jacob J , Janelle S , Kainer MA , Lynfield R , Phipps EC , Schutz K , Wilson L , Witwer ML , Bulens SN , Walters MS , Duffy N , Kallen AJ , Elkins CA , Rasheed JK . Microb Drug Resist 2022 28 (4) 389-397