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CDC-Authored Genomics and Precision Health Publications Database|Home|Public Health Genomics and Precision Health Knowledge Base (PHGKB)

CDC-Authored Genomics and Precision Health Publications Database


Last data update: Aug 15, 2025. (Total: 6773 publications)
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Records 1-30 (of 40 Records)
Query Trace: Cook P[original query]
Skilled nursing facility wastewater surveillance: a SARS-CoV-2 and antimicrobial resistance detection pilot study
Santiago AJ , Burgos Garay M , Campbell M , Cahela Y , Donlan R , Gable P , Ganim Kyros C , Franco L , Kartforosh L , Lenz S , Lyons AK , Moore J , Noble-Wang J , Sanders C , Abera B , Adler CH , Jones S , Medrzycki M , Walters MS , Cook P , Li Y , Tao Y , Zhang J , Malapati L , Retchless A , Tong S , Coulliette-Salmond AD .
J Water Health 2025 23 (6) 727-742
Household clusters of SARS-CoV-2 Omicron subvariants contemporaneously sequenced from dogs and their owners
Ferreira FC , Auckland LD , Busselman RE , Davila E , Tang W , Lim A , Sarbo N , Yaglom HD , Centner H , Mead HL , Tao Y , Castro J , Li Y , Zhang J , Wang H , Malapati L , Cook P , Retchless A , Tong S , Zecca IB , Ghai RR , Barton Behravesh C , Fischer RSB , Hamer GL , Hamer SA .
mSphere 2025 e0007425
Pre-diagnostic serum concentrations of per- and polyfluoroalkyl substances and risk of endometrial cancer in a US cohort
Madrigal JM , Trabert B , Medgyesi DN , Fisher JA , Calafat AM , Cook Botelho J , Kato K , Albert PS , Silverman DT , Hofmann JN , Jones RR .
Environ Health Perspect 2025
Genomic surveillance for SARS-CoV-2 variants: Circulation of Omicron XBB and JN.1 lineages - United States, May 2023-September 2024
Ma KC , Castro J , Lambrou AS , Rose EB , Cook PW , Batra D , Cubenas C , Hughes LJ , MacCannell DR , Mandal P , Mittal N , Sheth M , Smith C , Winn A , Hall AJ , Wentworth DE , Silk BJ , Thornburg NJ , Paden CR .
MMWR Morb Mortal Wkly Rep 2024 73 (42) 938-945 type
Evaluating analytic models for individually randomized group treatment trials with complex clustering in nested and crossed designs
Moyer JC , Li F , Cook AJ , Heagerty PJ , Pals SL , Turner EL , Wang R , Zhou Y , Yu Q , Wang X , Murray DM .
Stat Med 2024
A one health approach for monitoring antimicrobial resistance: developing a national freshwater pilot effort
Franklin AM , Weller DL , Durso LM , Bagley M , Davis BC , Frye JG , Grim CJ , Ibekwe AM , Jahne MA , Keely SP , Kraft AL , McConn BR , Mitchell RM , Ottesen AR , Sharma M , Strain EA , Tadesse DA , Tate H , Wells JE , Williams CF , Cook KL , Kabera C , McDermott PF , Garland JL .
Front Water 2024 6 type
Rapid outbreak sequencing of Ebola virus in Sierra Leone identifies transmission chains linked to sporadic cases.
Arias A , Watson SJ , Asogun D , Tobin EA , Lu J , Phan MVT , Jah U , Wadoum REG , Meredith L , Thorne L , Caddy S , Tarawalie A , Langat P , Dudas G , Faria NR , Dellicour S , Kamara A , Kargbo B , Kamara BO , Gevao S , Cooper D , Newport M , Horby P , Dunning J , Sahr F , Brooks T , Simpson AJH , Groppelli E , Liu G , Mulakken N , Rhodes K , Akpablie J , Yoti Z , Lamunu M , Vitto E , Otim P , Owilli C , Boateng I , Okoror L , Omomoh E , Oyakhilome J , Omiunu R , Yemisis I , Adomeh D , Ehikhiametalor S , Akhilomen P , Aire C , Kurth A , Cook N , Baumann J , Gabriel M , Wölfel R , Di Caro A , Carroll MW , Günther S , Redd J , Naidoo D , Pybus OG , Rambaut A , Kellam P , Goodfellow I , Cotten M .
Virus Evol 2016 2 (1) vew016
Two rotavirus outbreaks caused by genotype G2P[4] at large retirement communities: cohort studies.
Cardemil CV , Cortese MM , Medina-Marino A , Jasuja S , Desai R , Leung J , Rodriguez-Hart C , Villarruel G , Howland J , Quaye O , Tam KI , Bowen MD , Parashar UD , Gerber SI .
Ann Intern Med 2012 157 (9) 621-31
Correlation of wastewater surveillance data with traditional influenza surveillance measures in Cook County, Illinois, October 2022-April 2023
Faherty EAG , Yuce D , Korban C , Bemis K , Kowalski R , Gretsch S , Ramirez E , Poretsky R , Packman A , Leisman KP , Pierce M , Kittner A , Teran R , Pacilli M .
Sci Total Environ 2023 912 169551 type
Genomic surveillance for SARS-CoV-2 variants: Circulation of Omicron lineages - United States, January 2022-May 2023
Ma KC , Shirk P , Lambrou AS , Hassell N , Zheng XY , Payne AB , Ali AR , Batra D , Caravas J , Chau R , Cook PW , Howard D , Kovacs NA , Lacek KA , Lee JS , MacCannell DR , Malapati L , Mathew S , Mittal N , Nagilla RR , Parikh R , Paul P , Rambo-Martin BL , Shepard SS , Sheth M , Wentworth DE , Winn A , Hall AJ , Silk BJ , Thornburg N , Kondor R , Scobie HM , Paden CR .
MMWR Morb Mortal Wkly Rep 2023 72 (24) 651-656
Postexposure Prophylaxis and Treatment of Bacillus anthracis Infections: A Systematic Review and Meta-analyses of Animal Models, 1947-2019.
Kennedy JL , Bulitta JB , Chatham-Stephens K , Person MK , Cook R , Mongkolrattanothai T , Shin E , Yu P , Negron ME , Bower WA , Hendricks K .
Clin Infect Dis 2022 75 S379-s391
SARS-CoV-2 Delta-Omicron Recombinant Viruses, United States.
Lacek KA , Rambo-Martin BL , Batra D , Zheng XY , Hassell N , Sakaguchi H , Peacock T , Groves N , Keller M , Wilson MM , Sheth M , Davis ML , Borroughs M , Gerhart J , Shepard SS , Cook PW , Lee J , Wentworth DE , Barnes JR , Kondor R , Paden CR .
Emerg Infect Dis 2022 28 (7) 1442-1445 type
The Use of Whole-Genome Sequencing by the Federal Interagency Collaboration for Genomics for Food and Feed Safety in the United States.
Stevens EL , Carleton HA , Beal J , Tillman GE , Lindsey RL , Lauer AC , Pightling A , Jarvis KG , Ottesen A , Ramachandran P , Hintz L , Katz LS , Folster JP , Whichard JM , Trees E , Timme RE , McDermott P , Wolpert B , Bazaco M , Zhao S , Lindley S , Bruce BB , Griffin PM , Brown E , Allard M , Tallent S , Irvin K , Hoffmann M , Wise M , Tauxe R , Gerner-Smidt P , Simmons M , Kissler B , Defibaugh-Chavez S , Klimke W , Agarwala R , Lindsay J , Cook K , Austerman SR , Goldman D , McGarry S , Hale KR , Dessai U , Musser SM , Braden C .
J Food Prot 2022 85 (5) 755-772 type
A case report of Salmonella enterica serovar Corvallis from environmental isolates from Cambodia and clinical isolates in the UK.
Schwan CL , Dallman TJ , Cook PW , Vipham J .
Access Microbiol 2022 4 (1) 000315
Genomic Surveillance for SARS-CoV-2 Variants: Predominance of the Delta (B.1.617.2) and Omicron (B.1.1.529) Variants - United States, June 2021-January 2022.
Lambrou AS , Shirk P , Steele MK , Paul P , Paden CR , Cadwell B , Reese HE , Aoki Y , Hassell N , Caravas J , Kovacs NA , Gerhart JG , Ng HJ , Zheng XY , Beck A , Chau R , Cintron R , Cook PW , Gulvik CA , Howard D , Jang Y , Knipe K , Lacek KA , Moser KA , Paskey AC , Rambo-Martin BL , Nagilla RR , Rethchless AC , Schmerer MW , Seby S , Shephard SS , Stanton RA , Stark TJ , Uehara A , Unoarumhi Y , Bentz ML , Burhgin A , Burroughs M , Davis ML , Keller MW , Keong LM , Le SS , Lee JS , Madden Jr JC , Nobles S , Owouor DC , Padilla J , Sheth M , Wilson MM , Talarico S , Chen JC , Oberste MS , Batra D , McMullan LK , Halpin AL , Galloway SE , MacCannell DR , Kondor R , Barnes J , MacNeil A , Silk BJ , Dugan VG , Scobie HM , Wentworth DE .
MMWR Morb Mortal Wkly Rep 2022 71 (6) 206-211 type
Genotypic and Phenotypic Characterization of Antimicrobial Resistance Profiles in Non-typhoidal Salmonella enterica Strains Isolated From Cambodian Informal Markets.
Schwan CL , Lomonaco S , Bastos LM , Cook PW , Maher J , Trinetta V , Bhullar M , Phebus RK , Gragg S , Kastner J , Vipham JL .
Front Microbiol 2021 12 711472 type
Horizontal Gene Transfer Is the Main Driver of Antimicrobial Resistance in Broiler Chicks Infected with Salmonella enterica Serovar Heidelberg.
Oladeinde A , Abdo Z , Press MO , Cook K , Cox NA , Zwirzitz B , Woyda R , Lakin SM , Thomas JC4th , Looft T , Cosby DE , Hinton AJr , Guard J , Line E , Rothrock MJ , Berrang ME , Herrington K , Zock G , Plumblee Lawrence J , Cudnik D , House S , Ingram K , Lariscy L , Wagner M , Aggrey SE , Chai L , Ritz C .
mSystems 2021 6 (4) e0072921 type
Early introductions and transmission of SARS-CoV-2 variant B.1.1.7 in the United States.
Alpert T , Brito AF , Lasek-Nesselquist E , Rothman J , Valesano AL , MacKay MJ , Petrone ME , Breban MI , Watkins AE , Vogels CBF , Kalinich CC , Dellicour S , Russell A , Kelly JP , Shudt M , Plitnick J , Schneider E , Fitzsimmons WJ , Khullar G , Metti J , Dudley JT , Nash M , Beaubier N , Wang J , Liu C , Hui P , Muyombwe A , Downing R , Razeq J , Bart SM , Grills A , Morrison SM , Murphy S , Neal C , Laszlo E , Rennert H , Cushing M , Westblade L , Velu P , Craney A , Cong L , Peaper DR , Landry ML , Cook PW , Fauver JR , Mason CE , Lauring AS , St George K , MacCannell DR , Grubaugh ND .
Cell 2021 184 (10) 2595-2604 e13
SARS-CoV-2 transmission in a Georgia school district - United States, December 2020-January 2021.
Gettings JR , Gold JAW , Kimball A , Forsberg K , Scott C , Uehara A , Tong S , Hast M , Swanson MR , Morris E , Oraka E , Almendares O , Thomas ES , Mehari L , McCloud J , Roberts G , Crosby D , Balajee A , Burnett E , Chancey RJ , Cook P , Donadel M , Espinosa C , Evans ME , Fleming-Dutra KE , Forero C , Kukielka EA , Li Y , Marcet PL , Mitruka K , Nakayama JY , Nakazawa Y , O'Hegarty M , Pratt C , Rice ME , Rodriguez Stewart RM , Sabogal R , Sanchez E , Velasco-Villa A , Weng MK , Zhang J , Rivera G , Parrott T , Franklin R , Memark J , Drenzek C , Hall AJ , Kirking HL , Tate JE , Vallabhaneni S .
Clin Infect Dis 2021 74 (2) 319-326 type
Investigation of a Large Diphtheria Outbreak and Co-circulation of Corynebacterium pseudodiphtheriticum among Forcibly Displaced Myanmar Nationals, 2017-2019.
Weil LM , Williams MM , Shirin T , Lawrence M , Habib ZH , Aneke JS , Tondella ML , Zaki Q , Cassiday PK , Lonsway D , Farrque M , Hossen T , Feldstein LR , Cook N , Maldonado-Quiles G , Alam AN , Muraduzzaman AKM , Akram A , Conklin L , Doan S , Friedman M , Acosta AM , Hariri S , Fox LM , Tiwari TSP , Flora MS .
J Infect Dis 2020 224 (2) 318-325
Detection and Characterization of Swine-origin Influenza A(H1N1) Pandemic 2009 Viruses in Humans Following Zoonotic Transmission.
Cook PW , Stark T , Jones J , Kondor R , Zanders N , Benfer J , Scott S , Jang Y , Janas-Martindale A , Lindstrom S , Blanton L , Schiltz J , Tell R , Griesser R , Shult P , Reisdorf E , Danz T , Fry A , Barnes J , Vincent A , Wentworth DE , Davis CT .
J Virol 2020 95 (2) type
Draft Genome Sequences of 81 Salmonella enterica Strains from Informal Markets in Cambodia.
Schwan CL , Trinetta V , Balkey M , Cook PW , Phebus RK , Gragg S , Kastner J , Vipham JL , Lomonaco S .
Microbiol Resour Announc 2020 9 (36) type
Employing Molecular Phylodynamic Methods to Identify and Forecast HIV Transmission Clusters in Public Health Settings: A Qualitative Study.
Rich SN , Richards VL , Mavian CN , Switzer WM , Rife Magalis B , Poschman K , Geary S , Broadway SE , Bennett SB , Blanton J , Leitner T , Boatwright JL , Stetten NE , Cook RL , Spencer EC , Salemi M , Prosperi M .
Viruses 2020 12 (9) type
Sociodemographic, Ecological, and Spatiotemporal Factors Associated with Human Immunodeficiency Virus Drug Resistance in Florida: A Retrospective Analysis.
Rich SN , Poschman K , Hu H , Mavian C , Cook RL , Salemi M , Spencer EC , Prosperi M .
J Infect Dis 2020 223 (5) 866-875 type
Genetically and antigenically divergent influenza A(H9N2) viruses exhibit differential replication and transmission phenotypes in mammalian models.
Belser JA , Sun X , Brock N , Pappas C , Pulit-Penaloza JA , Zeng H , Jang Y , Jones J , Carney PJ , Chang J , Van Long N , Diep NT , Thor S , Di H , Yang G , Cook PW , Creager HM , Wang D , McFarland J , Van Dong P , Wentworth DE , Tumpey TM , Barnes JR , Stevens J , Davis CT , Maines TR .
J Virol 2020 94 (17)
Successful isolation of Treponema pallidum strains from patients' cryopreserved ulcer exudate using the rabbit model.
Pereira LE , Katz SS , Sun Y , Mills P , Taylor W , Atkins P , Thurlow CM , Chi KH , Danavall D , Cook N , Ahmed T , Debra A , Philip S , Cohen S , Workowski KA , Kersh E , Fakile Y , Chen CY , Pillay A .
PLoS One 2020 15 (1) e0227769 type
Detection of highly pathogenic avian influenza A(H5N6) viruses in waterfowl in Bangladesh.
Yang G , Chowdury S , Hodges E , Rahman MZ , Jang Y , Hossain ME , Jones J , Stark TJ , Di H , Cook PW , Ghosh S , Azziz-Baumgartner E , Barnes JR , Wentworth DE , Kennedy E , Davis CT .
Virology 2019 534 36-44 type
A Systematic Approach to Identify and Characterize the Effectiveness and Safety of Novel Probiotic Strains to Control Foodborne Pathogens.
Ayala DI , Cook PW , Franco JG , Bugarel M , Kottapalli KR , Loneragan GH , Brashears MM , Nightingale KK .
Front Microbiol 2019 10 1108
Complete Genome Sequences of Four Salmonella enterica Strains (Including Those of Serotypes Montevideo, Mbandaka, and Lubbock) Isolated from Peripheral Lymph Nodes of Healthy Cattle.
Bugarel M , Cook PW , den Bakker HC , Harhay D , Nightingale KK , Loneragan GH .
Microbiol Resour Announc 2019 8 (2) type
Measuring changes in transmission of neglected tropical diseases, malaria, and enteric pathogens from quantitative antibody levels.
Arnold BF , van der Laan MJ , Hubbard AE , Steel C , Kubofcik J , Hamlin KL , Moss DM , Nutman TB , Priest JW , Lammie PJ .
PLoS Negl Trop Dis 2017 11 (5) e0005616
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