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Public Health Genomics and Precision Health Knowledge Base (v10.0)
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CDC-Authored Genomics and Precision Health Publications Database|Home|Public Health Genomics and Precision Health Knowledge Base (PHGKB)
CDC-Authored Genomics and Precision Health Publications Database
Last data update: Nov 11, 2024
. (Total: 6403 publications)
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Records 1-30 (of 41 Records)
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Chochua S[original query]
Genomic cluster formation among invasive group A streptococcal infections in the USA: a whole-genome sequencing and population-based surveillance study
Li Y
,
Rivers J
,
Mathis S , Li Z ,
Chochua S
,
Metcalf BJ
,
Beall B ,
McGee L
.
Lancet Microbe 2024 100927
Impact of pneumococcal conjugate vaccines on invasive pneumococcal disease-causing lineages among South African children
Lekhuleni C , Ndlangisa K , Gladstone RA ,
Chochua S
,
Metcalf BJ
,
Li Y
,
Kleynhans J , de Gouveia L , Hazelhurst S , Ferreira ADS , Skosana H , Walaza S , Quan V , Meiring S ,
Hawkins PA
,
McGee L
,
Bentley SD , Cohen C , Lo SW , von Gottberg A , du Plessis M .
Nat Commun 2024 15 (1) 8401
Increased proportions of invasive pneumococcal disease cases amongs adults experiencing homelessness sets stage for new serotype 4 capsular-switch recombinant
Beall B
,
Chochua S
,
Metcalf B
,
Lin W
,
Tran T
,
Li Z
,
Li Y
,
Bentz ML
,
Sheth M
,
Osis G
,
McGee L
.
J Infect Dis 2024
The emergent invasive serotype 4 ST10172 strain acquires vanG type vancomycin-resistance element: A case of a 66-year-old with bacteremic pneumococcal pneumonia
Chochua S
,
Beall B ,
Lin W
,
Tran T
,
Rivers J
,
Li Z
,
Arvay ML
,
Kobayashi M
,
Houston J , Arias S ,
McGee L
.
J Infect Dis 2024
Recombinational exchange of M-fibril and T-pilus genes generates extensive cell surface diversity in the global group A Streptococcus population
Bessen DE ,
Beall BW
,
Hayes A , Huang W , DiChiara JM ,
Velusamy S
,
Tettelin H , Jolley KA , Fallon JT ,
Chochua S
,
Alobaidallah MSA , Higgs C , Barnett TC , Steemson JT , Proft T , Davies MR .
mBio 2024 e0069324
A novel invasive Streptococcus pyogenes variant sublineage derived through recombinational replacement of the emm12 genomic region
Unoarumhi Y
,
Davis ML
,
Rowe LA
,
Mathis S
,
Li Z
,
Chochua S
,
Li Y
,
McGee L
,
Metcalf BJ
,
Lee JS
,
Beall B
.
Sci Rep 2023 13 (1) 21510
Notes from the field: A cluster of multi-strain invasive pneumococcal disease among persons experiencing homelessness and use of pneumococcal conjugate vaccine - El Paso County, Colorado, 2022
Callaway J , Durbin K , Zachary H , Barnes MM ,
Kobayashi M
,
Chochua S
,
Gayou N , Albanese B .
MMWR Morb Mortal Wkly Rep 2023 72 (46) 1277-1278
Expansion of invasive group A streptococcus M1(uk) lineage in active bacterial core surveillance, United States, 2019‒2021
Li Y
,
Rivers J
,
Mathis S
,
Li Z
,
Chochua S
,
Metcalf BJ
,
Beall B
,
Onukwube J
,
Gregory CJ
,
McGee L
.
Emerg Infect Dis 2023 29 (10) 2116-2120
Invasive Group A Streptococcal Penicillin Binding Protein 2× Variants Associated with Reduced Susceptibility to β-Lactam Antibiotics in the United States, 2015-2021.
Chochua S
,
Metcalf B
,
Li Z , Mathis S , Tran T ,
Rivers J
,
Fleming-Dutra KE
,
Li Y
,
McGee L
,
Beall B
.
Antimicrob Agents Chemother 2022 66 (9) e0080222
Simultaneous Late, Late-Onset Group B Streptococcal Meningitis in Identical Twins.
Sherman G , Lamb GS , Platt CD , Wessels MR ,
Chochua S
,
Nakamura MM .
Clin Pediatr (Phila) 2022 62 (2) 99228221113630
Continued Increase of Erythromycin- and Clindamycin-Nonsusceptibility among Invasive Group A Streptococci Driven by Genomic Clusters, USA, 2018-2019.
Li Y
,
Rivers J
,
Mathis S
,
Li Z
,
McGee L
,
Chochua S
,
Metcalf BJ
,
Fleming-Dutra KE
,
Nanduri SA
,
Beall B
.
Clin Infect Dis 2022 76 (3) e1266-e1269
Cluster Transmission Drives Invasive Group A Streptococcus Disease Within the US and is Focused on Communities Experiencing Disadvantage.
Metcalf B
,
Nanduri S
,
Chochua S
,
Li Y
,
Fleming-Dutra K
,
McGee L
,
Beall B
.
J Infect Dis 2022 226 (3) 546-553
Invasive pneumococcal disease clusters disproportionally impact persons experiencing homelessness, injecting drug users, and the western United States.
Beall B ,
Chochua S
,
Li Z , Tran T , Varghese J ,
McGee L
,
Li Y
,
Metcalf B
.
J Infect Dis 2022 226 (2) 332-341
Genomic Characterization of Group A Streptococci Causing Pharyngitis and Invasive Disease in Colorado, USA, June 2016 - April 2017.
Li Y
,
Dominguez S ,
Nanduri SA
,
Rivers J
,
Mathis S
,
Li Z
,
McGee L
,
Chochua S
,
Metcalf BJ
,
Van Beneden CA
,
Beall B
,
Miller L .
J Infect Dis 2021 225 (10) 1841-1851
Patterns of antibiotic nonsusceptibility among invasive group A Streptococcus infections-United States, 2006-2017.
Fay K
,
Onukwube J
,
Chochua S
,
Schaffner W , Cieslak P , Lynfield R , Muse A , Smelser C , Harrison LH , Farley M , Petit S , Alden N , Apostal M , Vagnone PS ,
Nanduri S
,
Beall B
,
Van Beneden CA
.
Clin Infect Dis 2021 73 (11) 1957-1964
Low but Increasing Prevalence of Reduced Beta-lactam Susceptibility Among Invasive Group B Streptococcal Isolates, US Population-Based Surveillance, 1998-2018.
Kobayashi M
,
McGee L
,
Chochua S
,
Apostol M , Alden NB , Farley MM , Harrison LH , Lynfield R , Vagnone PS , Smelser C , Muse A , Thomas AR ,
Deng L
,
Metcalf BJ
,
Beall BW
,
Schrag SJ
.
Open Forum Infect Dis 2021 8 (2) ofaa634
Invasive pneumococcal strain distributions and isolate clusters associated with persons experiencing homelessness during 2018.
Metcalf BJ
,
Chochua S
,
Walker H , Tran T , Li Z , Varghese J , Snippes Vagnone PM , Lynfield R ,
McGee L
,
Li Y
,
Pilishvili T
,
Beall B
.
Clin Infect Dis 2020 72 (12) e948-e956
Sequential quadriplex real-time PCR for identifying 20 common emm types of Group A Streptococcus .
Velusamy S
,
Jordak K , Kupor M ,
Chochua S
,
McGee L
,
Beall B
.
J Clin Microbiol 2020 59 (1)
Upsurge of conjugate vaccine serotype 4 invasive pneumococcal disease clusters among adults experiencing homelessness in California, Colorado, and New Mexico.
Beall B
,
Walker H
,
Tran T
,
Li Z
,
Varghese J
,
McGee L
,
Li Y
,
Metcalf BJ
,
Gierke R
,
Mosites E
,
Chochua S
,
Pilishvili T
.
J Infect Dis 2020 223 (7) 1241-1249
Genomic Surveillance of Streptococcus pyogenes Strains Causing Invasive Disease, United States, 2016-2017.
Li Y
,
Rivers J
,
Mathis S
,
Li Z
,
Velusamy S
,
Nanduri SA
,
Van Beneden CA
,
Snippes-Vagnone P , Lynfield R ,
McGee L
,
Chochua S
,
Metcalf BJ
,
Beall B
.
Front Microbiol 2020 11 1547
Multistate, population-based distributions of candidate vaccine targets, clonal complexes, and resistance features of invasive Group B Streptococci within the US: 2015-2017.
McGee L
,
Chochua S
,
Li Z
,
Mathis S
,
Rivers J
,
Metcalf B
,
Ryan A , Alden N , Farley MM , Harrison LH , Snippes Vagnone P , Lynfield R , Smelser C , Muse A , Thomas AR ,
Schrag S
,
Beall BW
.
Clin Infect Dis 2020 72 (6) 1004-1013
Streptococcus pyogenes pbp2x Mutation Confers Reduced Susceptibility to β-lactam antibiotics.
Vannice K
,
Ricaldi J
,
Nanduri S
,
Fang FC , Lynch J , Bryson-Cahn C , Wright T , Duchin J , Kay M ,
Chochua S
,
Van Beneden C
,
Beall B
.
Clin Infect Dis 2019 71 (1) 201-204
Multistate population and whole genome sequence based strain surveillance of invasive pneumococci recovered in the United States during 2017.
Varghese J ,
Chochua S
,
Tran T , Walker H , Li Z , Snippes Vagnone PM , Lynfield R ,
McGee L
,
Li Y
,
Metcalf B
,
Pilishvili T
,
Beall B
.
Clin Microbiol Infect 2019 26 (4) 512 e1-512 e10
Emergent Invasive Group A Streptococcus dysgalactiae subsp. Equisimilis, United States, 2015-2018.
Chochua S
,
Rivers J
,
Mathis S
,
Li Z
,
Velusamy S
,
McGee L
,
Van Beneden C
,
Li Y
,
Metcalf BJ
,
Beall B
.
Emerg Infect Dis 2019 25 (8) 1543-1547
Increase in Invasive Group A Streptococcal Disease and Emergence of Mucoid Strains in a Pediatric Population: February-June 2017.
Walker LW , Montoya L ,
Chochua S
,
Beall B
,
Green M .
Open Forum Infect Dis 2019 6 (7) ofz275
Group A Streptococcus outbreak among residents and employees of two skilled nursing facilities: North Carolina, 2017.
Palladino KJ , Morrison T ,
Chochua S
,
Bowers L ,
MacFarquhar JK
.
Am J Infect Control 2019 47 (7) 846-849
Genome-wide association analyses of invasive pneumococcal isolates identify a missense bacterial mutation associated with meningitis.
Li Y
,
Metcalf BJ
,
Chochua S
,
Li Z
,
Walker H
,
Tran T
,
Hawkins PA
,
Gierke R
,
Pilishvili T
,
McGee L
,
Beall BW
.
Nat Commun 2019 10 (1) 178
A Population-Based Descriptive Atlas of Invasive Pneumococcal Strains Recovered Within the U.S. During 2015-2016.
Beall B
,
Chochua S
,
Gertz RE Jr
,
Li Y
,
Li Z
,
McGee L
,
Metcalf BJ
,
Ricaldi J
,
Tran T
,
Walker H
,
Pilishvili T
.
Front Microbiol 2018 9 2670
A prolonged and large outbreak of invasive group A streptococcal disease within a nursing home: repeated intra-facility transmission of a single strain.
Nanduri SA
,
Metcalf BJ
,
Arwady MA ,
Edens C
,
Lavin MA , Morgan J , Clegg W , Beron A , Albertson JP ,
Link-Gelles R
,
Ogundimu A
,
Gold J
,
Jackson D
,
Chochua S
,
Stone N
,
Van Beneden C
,
Fleming-Dutra K
,
Beall B
.
Clin Microbiol Infect 2018 25 (2) 248 e1-248 e7
Population and Whole Genome Sequence Based Characterization of Invasive Group A Streptococci Recovered in the United States during 2015.
Chochua S
,
Metcalf BJ
,
Li Z
,
Rivers J
,
Mathis S
,
Jackson D
,
Gertz RE Jr
,
Srinivasan V
,
Lynfield R ,
Van Beneden C
,
McGee L
,
Beall B
.
mBio 2017 8 (5)
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Page last reviewed:
Feb 1, 2024
Content source:
Public Health Genomics Branch in the Division of Blood Disorders and Public Health Genomics
,
National Center on Birth Defects and Developmental Disabilities
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