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CDC-Authored Genomics and Precision Health Publications Database|Home|PHGKB

CDC-Authored Genomics and Precision Health Publications Database


Last data update: Sep 25, 2023. (Total: 4424 publications since 2011)
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Records 1-30 (of 187 Records)
Query Trace: Chen A[original query]
Reoccurring Escherichia coli O157:H7 strain linked to leafy greens-associated outbreaks, 2016-2019
Chen JC , Patel K , Smith PA , Vidyaprakash E , Snyder C , Tagg KA , Webb HE , Schroeder MN , Katz LS , Rowe LA , Howard D , Griswold T , Lindsey RL , Carleton HA .
Emerg Infect Dis 2023 29 (9) 1895-1899
Antimicrobial-resistant nontyphoidal Salmonella infection following international travel - United States, 2018-2019
Ford L , Shah HJ , Eikmeier D , Hanna S , Chen J , Tagg KA , Langley G , Payne DC , Plumb ID .
J Infect Dis 2023
Risk Factors for Multisystem Inflammatory Syndrome in Children: A Case-Control Investigation.
Zambrano LD , Wu MJ , Martin L , Malloch L , Chen S , Newhams MM , Son MB , Sanders C , Patterson K , Halasa N , Fitzgerald J , Leroue M , Hall M , Irby K , Rowan CM , Wellnitz K , Sahni L , Loftis L , Bradford TT , Staat M , Babbitt C , Carroll CL , Pannaraj P , Kong M , Schuster JE , Chou J , Patel MM , Randolph AG , Campbell AP , Hobbs CV .
Pediatr Infect Dis J 2023 type
Distinct In Vitro and In Vivo Neutralization Profiles of Monoclonal Antibodies Elicited by the Receptor Binding Domain of the Ancestral SARS-CoV-2.
Kwon HJ , Zhang J , Kosikova M , Tang W , Ortega-Rodriguez U , Peng H , Meseda CA , Pedro CL , Schmeisser F , Lu J , Kang I , Zhou B , Davis CT , Wentworth DE , Chen WH , Shriver MC , Barnes RS , Pasetti MF , Weir JP , Chen B , Xie H .
J Med Virol 2023 type
Genome Sequences from a Reemergence of Vibrio cholerae in Haiti, 2022 Reveal Relatedness to Previously Circulating Strains.
Walters C , Chen J , Stroika S , Katz LS , Turnsek M , Compre V , Im MS , Gomez S , McCullough A , Landaverde C , Putney J , Caidi H , Folster J , Carleton HA , Boncy J , Lee CC .
J Clin Microbiol 2023 e0014223
Increased Multidrug-Resistant Salmonella enterica I Serotype 4,[5],12:i:- Infections Associated with Pork, United States, 2009-2018.
Plumb ID , Brown AC , Stokes EK , Chen JC , Carleton H , Tolar B , Sundararaman P , Saupe A , Payne DC , Shah HJ , Folster JP , Friedman CR .
Emerg Infect Dis 2023 29 (2) 314-22
ICTV Virus Taxonomy Profile: Matonaviridae 2022.
Mankertz A , Chen MH , Goldberg TL , Hbschen JM , Pfaff F , Ulrich RG , IctvReport Consortium .
J Gen Virol 2022 103 (12)
Molecular evolution and antigenic drift of type 3 iVDPVs excreted from a patient with immunodeficiency in Ningxia, China.
Fan Q , Ma J , Li X , Jorba J , Yuan F , Zhu H , Hu L , Song Y , Wang D , Zhu S , Yan D , Chen H , Xu W , Zhang Y .
J Med Virol 2023 95 (1) e28215
Cross-neutralization and viral fitness of SARS-CoV-2 Omicron sublineages.
Xia H , Yeung J , Kalveram B , Bills CJ , Chen JY , Kurhade C , Zou J , Widen SG , Mann BR , Kondor R , ToddDavis C , Zhou B , Wentworth DE , Xie X , Shi PY .
Emerg Microbes Infect 2023 1-19 type
Case report: Persistent shedding of a live vaccine-derived rubella virus in a young man with severe combined immunodeficiency and cutaneous granuloma.
Bonner KE , Sukerman E , Liko J , Lanzieri TM , Sutton M , DeBess E , Leesman C , Icenogle J , Hao L , Chen MH , Faisthalab R , Leman RF , Cieslak PR , DeRavin SS , Perelygina L .
Front Immunol 2022 13 1075351
Multiple introductions and recombination events underlie the emergence of a hyper-transmissible Cryptosporidium hominis subtype in the USA.
Huang W , Guo Y , Lysen C , Wang Y , Tang K , Seabolt MH , Yang F , Cebelinski E , Gonzalez-Moreno O , Hou T , Chen C , Chen M , Wan M , Li N , Hlavsa MC , Roellig DM , Feng Y , Xiao L .
Cell Host Microbe 2022
Nearly Complete Genome Sequences of Type 2 Sabin-Like Polioviruses from Northern Nigerian Poliovirus Surveillance, 2016 to 2018.
Zhao K , Schmidt A , Tang K , Castro CJ , Liu H , Pang H , Chen Q , Baba M , Soji OB , Bukbuk D , Akinola M , Adeniji JA , Marine RL , Ng TFF , Jorba J , Burns CC .
Microbiol Resour Announc 2022 12 (1) e0073522
Horizontal Gene Transfer and Loss of Serotype-Specific Genes in Listeria monocytogenes Can Lead to Incorrect Serotype Designations with a Commonly-Employed Molecular Serotyping Scheme.
Brown P , Kucerova Z , Gorski L , Chen Y , Ivanova M , Leekitcharoenphon P , Parsons C , Niedermeyer J , Jackson J , Kathariou S .
Microbiol Spectr 2022 11 (1) e0274522
Impact of SARS-CoV-2 vaccination of children ages 5-11 years on COVID-19 disease burden and resilience to new variants in the United States, November 2021-March 2022: A multi-model study.
Borchering RK , Mullany LC , Howerton E , Chinazzi M , Smith CP , Qin M , Reich NG , Contamin L , Levander J , Kerr J , Espino J , Hochheiser H , Lovett K , Kinsey M , Tallaksen K , Wilson S , Shin L , Lemaitre JC , Hulse JD , Kaminsky J , Lee EC , Hill AL , Davis JT , Mu K , Xiong X , Pastore YPionttiA , Vespignani A , Srivastava A , Porebski P , Venkatramanan S , Adiga A , Lewis B , Klahn B , Outten J , Hurt B , Chen J , Mortveit H , Wilson A , Marathe M , Hoops S , Bhattacharya P , Machi D , Chen S , Paul R , Janies D , Thill JC , Galanti M , Yamana T , Pei S , Shaman J , Espaa G , Cavany S , Moore S , Perkins A , Healy JM , Slayton RB , Johansson MA , Biggerstaff M , Shea K , Truelove SA , Runge MC , Viboud C , Lessler J .
Lancet Reg Health Am 2023 17 100398 type
Identification of Human Monkeypox Virus Genome Deletions That Impact Diagnostic Assays.
Garrigues JM , Hemarajata P , Lucero B , Alarcn J , Ransohoff H , Marutani AN , Kim M , Marlowe EM , Realegeno SE , Kagan RM , Montero CI , Chen NFG , Grubaugh ND , Vogels CBF , Green NM .
J Clin Microbiol 2022 60 (12) e0165522
Enhanced virulence and waning vaccine-elicited antibodies account for breakthrough infections caused by SARS-CoV-2 Delta and beyond.
Kwon HJ , Kosikova M , Tang W , Ortega-Rodriguez U , Radvak P , Xiang R , Mercer KE , Muskhelishvili L , Davis K , Ward JM , Kosik I , Holly J , Kang I , Yewdell JW , Plant EP , Chen WH , Shriver MC , Barnes RS , Pasetti MF , Zhou B , Wentworth DE , Xie H .
iScience 2022 25 (12) 105507 type
Epigenome-wide association study of biomarkers of liver function identifies albumin-associated DNA methylation sites among male veterans with HIV.
Titanji BK , Lee M , Wang Z , Chen J , Hui Q , LoReIii V , So-Armah K , Justice AC , Xu K , Freiberg M , Gwinn M , Marconi VC , Sun YV .
Front Genet 2022 13 1020871
The third international hackathon for applying insights into large-scale genomic composition to use cases in a wide range of organisms.
Walker Kimberly, Kalra Divya, Lowdon Rebecca, Chen Guangyi, Molik David, Soto Daniela C, Dabbaghie Fawaz, Khleifat Ahmad Al, Mahmoud Medhat, Paulin Luis F, Raza Muhammad Sohail, Pfeifer Susanne P, Agustinho Daniel Paiva, Aliyev Elbay, Avdeyev Pavel, Barrozo Enrico R, Behera Sairam, Billingsley Kimberley, Chong Li Chuin, Choubey Deepak, De Coster Wouter, Fu Yilei, Gener Alejandro R, Hefferon Timothy, Henke David Morgan, Höps Wolfram, Illarionova Anastasia, Jochum Michael D, Jose Maria, Kesharwani Rupesh K, Kolora Sree Rohit Raj, Kubica Jędrzej, Lakra Priya, Lattimer Damaris, Liew Chia-Sin, Lo Bai-Wei, Lo Chunhsuan, Lötter Anneri, Majidian Sina, Mendem Suresh Kumar, Mondal Rajarshi, Ohmiya Hiroko, Parvin Nasrin, Peralta Carolina, Poon Chi-Lam, Prabhakaran Ramanandan, Saitou Marie, Sammi Aditi, Sanio Philippe, Sapoval Nicolae, Syed Najeeb, Treangen Todd, Wang Gaojianyong, Xu Tiancheng, Yang Jianzhi, Zhang Shangzhe, Zhou Weiyu, Sedlazeck Fritz J, Busby Ben. F1000Research 2022 11530 .
F1000Research 2022 11530 type
Molecular characterization of circulating Salmonella Typhi strains in an urban informal settlement in Kenya.
Ochieng C , Chen JC , Osita MP , Katz LS , Griswold T , Omballa V , Ng'eno E , Ouma A , Wamola N , Opiyo C , Achieng L , Munywoki PK , Hendriksen RS , Freeman M , Mikoleit M , Juma B , Bigogo G , Mintz E , Verani JR , Hunsperger E , Carleton HA .
PLoS Negl Trop Dis 2022 16 (8) e0010704
Genomic Diversity, Antimicrobial Resistance, and Virulence Gene Profiles of Salmonella Serovar Kentucky Isolated from Humans, Food, and Animal Ceca Content Sources in the United States.
Tate H , Hsu CH , Chen JC , Han J , Foley SL , Folster JP , FrancoisWatkins LK , Reynolds J , Tillman GE , Nyirabahizi E , Zhao S .
Foodborne Pathog Dis 2022 19 (8) 509-521
Gestational SARS-CoV-2 infection is associated with placental expression of immune and trophoblast genes.
Lesseur C , Jessel RH , Ohrn S , Ma Y , Li Q , Dekio F , Brody RI , Wetmur JG , Gigase FAJ , Lieber M , Lieb W , Lynch J , Afzal O , Ibroci E , Rommel AS , Janevic T , Stone J , Howell EA , Galang RR , Dolan SM , Bergink V , DeWitte LD , Chen J .
Placenta 2022 126 125-132 type
Exogenous Rubella Virus Capsid Proteins Enhance Virus Genome Replication.
Chen MH , Burns CC , Abernathy E , Ogee-Nwankwo AA , Icenogle JP .
Pathogens 2022 11 (6)
Projected resurgence of COVID-19 in the United States in July-December 2021 resulting from the increased transmissibility of the Delta variant and faltering vaccination.
Truelove S , Smith CP , Qin M , Mullany LC , Borchering RK , Lessler J , Shea K , Howerton E , Contamin L , Levander J , Salerno J , Hochheiser H , Kinsey M , Tallaksen K , Wilson S , Shin L , Rainwater-Lovett K , Lemairtre JC , DentHulse J , Kaminsky J , Lee EC , Perez-Saez J , Hill A , Karlen D , Chinazzi M , Davis JT , Mu K , Xiong X , Pastore YPionttiA , Vespignani A , Srivastava A , Porebski P , Venkatramanan S , Adiga A , Lewis B , Klahn B , Outten J , Orr M , Harrison G , Hurt B , Chen J , Vullikanti A , Marathe M , Hoops S , Bhattacharya P , Machi D , Chen S , Paul R , Janies D , Thill JC , Galanti M , Yamana TK , Pei S , Shaman JL , Healy JM , Slayton RB , Biggerstaff M , Johansson MA , Runge MC , Viboud C .
Elife 2022 11 type
Genetic characterization of two G8P[8] rotavirus strains isolated in Guangzhou, China, in 2020/21: evidence of genome reassortment.
Wang Si-Jie, Chen Li-Na, Wang Song-Mei, Zhou Hong-Lu, Qiu Chao, Jiang Baoming, Qiu Tian-Yi, Chen Sheng-Li, von Seidlein Lorenz, Wang Xuan-Yi. BMC infectious diseases 2022 22(1) 579 .
BMC infectious diseases 2022 22(1) 579
Improved diagnostic and multiplex RT-qPCR for detecting rubella viral RNA.
Chen MH , Abernathy E , Icenogle JP , Perelygina LM .
J Virol Methods 2022 306 114555
Whole-Genome Sequencing Reveals Multiple Subpopulations of Dominant and Persistent Lineage I Isolates of Listeria monocytogenes in Two Meat Processing Facilities during 2011-2015.
Burnett E , Kucerova Z , Freeman M , Kathariou S , Chen J , Smikle M .
Microorganisms 2022 10 (5)
Identifying Cases of Shoulder Injury Related to Vaccine Administration (SIRVA) in the United States: Development and Validation of a Natural Language Processing Method.
Zheng C , Duffy J , Liu IA , Sy LS , Navarro RA , Kim SS , Ryan DS , Chen W , Qian L , Mercado C , Jacobsen SJ .
JMIR Public Health Surveill 2022 8 (5) e30426
An early warning system for emerging SARS-CoV-2 variants.
Subissi Lorenzo, von Gottberg Anne, Thukral Lipi, Worp Nathalie, Oude Munnink Bas B, Rathore Surabhi, Abu-Raddad Laith J, Aguilera Ximena, Alm Erik, Archer Brett N, Attar Cohen Homa, Barakat Amal, Barclay Wendy S, Bhiman Jinal N, Caly Leon, Chand Meera, Chen Mark, Cullinane Ann, de Oliveira Tulio, Drosten Christian, Druce Julian, Effler Paul, El Masry Ihab, Faye Adama, Gaseitsiwe Simani, Ghedin Elodie, Grant Rebecca, Haagmans Bart L, Herring Belinda L, Iyer Shilpa S, Kassamali Zyleen, Kakkar Manish, Kondor Rebecca J, Leite Juliana A, Leo Yee-Sin, Leung Gabriel M, Marklewitz Marco, Moyo Sikhulile, Mendez-Rico Jairo, Melhem Nada M, Munster Vincent, Nahapetyan Karen, Oh Djin-Ye, Pavlin Boris I, Peacock Thomas P, Peiris Malik, Peng Zhibin, Poon Leo L M, Rambaut Andrew, Sacks Jilian, Shen Yinzhong, Siqueira Marilda M, Tessema Sofonias K, Volz Erik M, Thiel Volker, van der Werf Sylvie, Briand Sylvie, Perkins Mark D, Van Kerkhove Maria D, Koopmans Marion P G, Agrawal Anurag. Nature medicine 2022 .
Nature medicine 2022 type
Antimicrobial Susceptibility Survey of Invasive Haemophilus influenzae in the United States in 2016.
Potts CC , Rodriguez-Rivera LD , Retchless AC , Buono SA , Chen AT , Marjuki H , Blain AE , Wang X .
Microbiol Spectr 2022 10 (3) e0257921
Selective Whole-Genome Amplification as a Tool to Enrich Specimens with Low Treponema pallidum Genomic DNA Copies for Whole-Genome Sequencing.
Thurlow CM , Joseph SJ , Ganova-Raeva L , Katz SS , Pereira L , Chen C , Debra A , Vilfort K , Workowski K , Cohen SE , Reno H , Sun Y , Burroughs M , Sheth M , Chi KH , Danavall D , Philip SS , Cao W , Kersh EN , Pillay A .
mSphere 2022 7 (3) e0000922
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