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CDC-Authored Genomics and Precision Health Publications Database|Home|Public Health Genomics and Precision Health Knowledge Base (PHGKB)

CDC-Authored Genomics and Precision Health Publications Database


Last data update: Jul 11, 2025. (Total: 6743 publications)
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Records 1-30 (of 47 Records)
Query Trace: Castro J[original query]
Household clusters of SARS-CoV-2 Omicron subvariants contemporaneously sequenced from dogs and their owners
Ferreira FC , Auckland LD , Busselman RE , Davila E , Tang W , Lim A , Sarbo N , Yaglom HD , Centner H , Mead HL , Tao Y , Castro J , Li Y , Zhang J , Wang H , Malapati L , Cook P , Retchless A , Tong S , Zecca IB , Ghai RR , Barton Behravesh C , Fischer RSB , Hamer GL , Hamer SA .
mSphere 2025 e0007425
Complete genome sequences of nine double recombinant vaccine-derived novel oral poliovirus type 2 genomes from Nigeria 2023-2024
Castro CJ , Oderinde BS , Poston KD , Mawashi KY , Bullard K , Akinola M , Meade C , Liu H , Hu F , Bullows JE , Gonzalez Z , Pang H , Sarris S , Agha C , Dybdahl-Sissoko N , Perry DB , McDuffie L , Henderson E , Burns CC , Jorba J , Baba M .
Microbiol Resour Announc 2024 e0088124 type
Genomic surveillance for SARS-CoV-2 variants: Circulation of Omicron XBB and JN.1 lineages - United States, May 2023-September 2024
Ma KC , Castro J , Lambrou AS , Rose EB , Cook PW , Batra D , Cubenas C , Hughes LJ , MacCannell DR , Mandal P , Mittal N , Sheth M , Smith C , Winn A , Hall AJ , Wentworth DE , Silk BJ , Thornburg NJ , Paden CR .
MMWR Morb Mortal Wkly Rep 2024 73 (42) 938-945 type
North-south pathways, emerging variants, and high climate suitability characterize the recent spread of dengue virus serotypes 2 and 3 in the Dominican Republic
Miguel I , Feliz EP , Agramonte R , Martinez PV , Vergara C , Imbert Y , De la Cruz L , de Castro N , Cedano O , De la Paz Y , Fonseca V , Santiago GA , Muñoz-Jordán JL , Peguero A , Paulino-Ramírez R , Grubaugh ND , de Filippis AMB , Alcantara LCJ , Rico JM , Lourenço J , Franco L , Giovanetti M .
BMC Infect Dis 2024 24 (1) 751 type
Molecular epidemiology of enteroviruses from Guatemalan wastewater isolated from human lung fibroblasts
Sayyad L , Harrington C , Castro CJ , Belgasmi-Allen H , Jeffries Miles S , Hill J , Mendoza Prillwitz ML , Gobern L , Gaitán E , Delgado AP , Castillo Signor L , Rondy M , Rey-Benito G , Gerloff N .
PLoS One 2024 19 (7) e0305108 type
Complete genome sequences of six S19 poliovirus reference strains
Castro CJ , Wiese N , Bullows JE , Poston KD , Meade C , Jorba J , Mainou BA .
Microbiol Resour Announc 2024 e0008024 type
Pregnancy and infant outcomes following SARS-CoV-2 infection in pregnancy during Delta variant predominance - surveillance for emerging threats to pregnant people and infants: Pregnancy and infant outcomes during SARS-CoV-2 Delta variant predominance
Reeves EL , Neelam V , Carlson JM , Olsen EO , Fox CJ , Woodworth KR , Nestoridi E , Mobley E , Montero Castro S , Dzimira P , Sokale A , Sizemore L , Hall AJ , Ellington S , Cohn A , Gilboa SM , Tong VT .
Am J Obstet Gynecol MFM 2023 6 (2) 101265
Development of treatment-decision algorithms for children evaluated for pulmonary tuberculosis: an individual participant data meta-analysis.
Gunasekera KS , Marcy O , Muñoz J , Lopez-Varela E , Sekadde MP , Franke MF , Bonnet M , Ahmed S , Amanullah F , Anwar A , Augusto O , Aurilio RB , Banu S , Batool I , Brands A , Cain KP , Carratalá-Castro L , Caws M , Click ES , Cranmer LM , García-Basteiro AL , Hesseling AC , Huynh J , Kabir S , Lecca L , Mandalakas A , Mavhunga F , Myint AA , Myo K , Nampijja D , Nicol MP , Orikiriza P , Palmer M , Sant'Anna CC , Siddiqui SA , Smith JP , Song R , Thuong Thuong NT , Ung V , van der Zalm MM , Verkuijl S , Viney K , Walters EG , Warren JL , Zar HJ , Marais BJ , Graham SM , Debray TPA , Cohen T , Seddon JA .
Lancet Child Adolesc Health 2023 7 (5) 336-346
Nearly Complete Genome Sequences of Type 2 Sabin-Like Polioviruses from Northern Nigerian Poliovirus Surveillance, 2016 to 2018.
Zhao K , Schmidt A , Tang K , Castro CJ , Liu H , Pang H , Chen Q , Baba M , Soji OB , Bukbuk D , Akinola M , Adeniji JA , Marine RL , Ng TFF , Jorba J , Burns CC .
Microbiol Resour Announc 2022 12 (1) e0073522 type
Household characteristics associated with surface contamination of SARS-CoV-2 and frequency of RT-PCR and viral culture positivity-California and Colorado, 2021.
Shragai T , Pratt C , Castro Georgi J , Donnelly MAP , Schwartz NG , Soto R , Chuey M , Chu VT , Marcenac P , Park GW , Ahmad A , Albanese B , Totten SE , Austin B , Bunkley P , Cherney B , Dietrich EA , Figueroa E , Folster JM , Godino C , Herzegh O , Lindell K , Relja B , Sheldon SW , Tong S , Vinjé J , Thornburg NJ , Matanock AM , Hughes LJ , Stringer G , Hudziec M , Beatty ME , Tate JE , Kirking HL , Hsu CH .
PLoS One 2022 17 (10) e0274946 type
Genome Sequences of 16 Enterovirus Isolates from Environmental Sewage in Guatemala, 2019 to 2021.
Harrington C , Sayyad L , Castro C , Hill J , Jeffries-Miles S , Belgasmi H , Rey-Benito G , Mendoza Prillwitz ML , Castillo Signor L , Gerloff N .
Microbiol Resour Announc 2022 11 (9) e0056222 type
Evaluation of individual and ensemble probabilistic forecasts of COVID-19 mortality in the United States.
Cramer EY , Ray EL , Lopez VK , Bracher J , Brennen A , Castro Rivadeneira AJ , Gerding A , Gneiting T , House KH , Huang Y , Jayawardena D , Kanji AH , Khandelwal A , Le K , Mühlemann A , Niemi J , Shah A , Stark A , Wang Y , Wattanachit N , Zorn MW , Gu Y , Jain S , Bannur N , Deva A , Kulkarni M , Merugu S , Raval A , Shingi S , Tiwari A , White J , Abernethy NF , Woody S , Dahan M , Fox S , Gaither K , Lachmann M , Meyers LA , Scott JG , Tec M , Srivastava A , George GE , Cegan JC , Dettwiller ID , England WP , Farthing MW , Hunter RH , Lafferty B , Linkov I , Mayo ML , Parno MD , Rowland MA , Trump BD , Zhang-James Y , Chen S , Faraone SV , Hess J , Morley CP , Salekin A , Wang D , Corsetti SM , Baer TM , Eisenberg MC , Falb K , Huang Y , Martin ET , McCauley E , Myers RL , Schwarz T , Sheldon D , Gibson GC , Yu R , Gao L , Ma Y , Wu D , Yan X , Jin X , Wang YX , Chen Y , Guo L , Zhao Y , Gu Q , Chen J , Wang L , Xu P , Zhang W , Zou D , Biegel H , Lega J , McConnell S , Nagraj VP , Guertin SL , Hulme-Lowe C , Turner SD , Shi Y , Ban X , Walraven R , Hong QJ , Kong S , van de Walle A , Turtle JA , Ben-Nun M , Riley S , Riley P , Koyluoglu U , DesRoches D , Forli P , Hamory B , Kyriakides C , Leis H , Milliken J , Moloney M , Morgan J , Nirgudkar N , Ozcan G , Piwonka N , Ravi M , Schrader C , Shakhnovich E , Siegel D , Spatz R , Stiefeling C , Wilkinson B , Wong A , Cavany S , España G , Moore S , Oidtman R , Perkins A , Kraus D , Kraus A , Gao Z , Bian J , Cao W , Lavista Ferres J , Li C , Liu TY , Xie X , Zhang S , Zheng S , Vespignani A , Chinazzi M , Davis JT , Mu K , Pastore YPiontti A , Xiong X , Zheng A , Baek J , Farias V , Georgescu A , Levi R , Sinha D , Wilde J , Perakis G , Bennouna MA , Nze-Ndong D , Singhvi D , Spantidakis I , Thayaparan L , Tsiourvas A , Sarker A , Jadbabaie A , Shah D , Della Penna N , Celi LA , Sundar S , Wolfinger R , Osthus D , Castro L , Fairchild G , Michaud I , Karlen D , Kinsey M , Mullany LC , Rainwater-Lovett K , Shin L , Tallaksen K , Wilson S , Lee EC , Dent J , Grantz KH , Hill AL , Kaminsky J , Kaminsky K , Keegan LT , Lauer SA , Lemaitre JC , Lessler J , Meredith HR , Perez-Saez J , Shah S , Smith CP , Truelove SA , Wills J , Marshall M , Gardner L , Nixon K , Burant JC , Wang L , Gao L , Gu Z , Kim M , Li X , Wang G , Wang Y , Yu S , Reiner RC , Barber R , Gakidou E , Hay SI , Lim S , Murray C , Pigott D , Gurung HL , Baccam P , Stage SA , Suchoski BT , Prakash BA , Adhikari B , Cui J , Rodríguez A , Tabassum A , Xie J , Keskinocak P , Asplund J , Baxter A , Oruc BE , Serban N , Arik SO , Dusenberry M , Epshteyn A , Kanal E , Le LT , Li CL , Pfister T , Sava D , Sinha R , Tsai T , Yoder N , Yoon J , Zhang L , Abbott S , Bosse NI , Funk S , Hellewell J , Meakin SR , Sherratt K , Zhou M , Kalantari R , Yamana TK , Pei S , Shaman J , Li ML , Bertsimas D , Skali Lami O , Soni S , Tazi Bouardi H , Ayer T , Adee M , Chhatwal J , Dalgic OO , Ladd MA , Linas BP , Mueller P , Xiao J , Wang Y , Wang Q , Xie S , Zeng D , Green A , Bien J , Brooks L , Hu AJ , Jahja M , McDonald D , Narasimhan B , Politsch C , Rajanala S , Rumack A , Simon N , Tibshirani RJ , Tibshirani R , Ventura V , Wasserman L , O'Dea EB , Drake JM , Pagano R , Tran QT , Ho LST , Huynh H , Walker JW , Slayton RB , Johansson MA , Biggerstaff M , Reich NG .
Proc Natl Acad Sci U S A 2022 119 (15) e2113561119
VPipe: an Automated Bioinformatics Platform for Assembly and Management of Viral Next-Generation Sequencing Data.
Wagner DD , Marine RL , Ramos E , Ng TFF , Castro CJ , Okomo-Adhiambo M , Harvey K , Doho G , Kelly R , Jain Y , Tatusov RL , Silva H , Rota PA , Khan AN , Oberste MS .
Microbiol Spectr 2022 10 (2) e0256421 type
Next-Generation Sequencing of Human Respiratory Syncytial Virus Subgroups A and B Genomes.
Wang L , Ng TFF , Castro CJ , Marine RL , Magaña LC , Esona M , Peret TCT , Thornburg NJ .
J Virol Methods 2021 299 114335 type
Whole-Genome Sequences of Enteroviruses D94 and D111 Isolated from Stool Specimens in Angola.
Chern SW , Gumede N , Castro CJ , Nix WA , Ng TFF .
Microbiol Resour Announc 2021 10 (40) e0072821 type
Exoproteomic analysis of two MLST clade 2 strains of Clostridioides difficile from Latin America reveal close similarities.
de Melo Pacífico D , Costa CL , Moura H , Barr JR , Maia GA , Filho VB , Moreira RS , Wagner G , Domingues Rmcp , Quesada-Gómez C , de Oliveira Ferreira E , de Castro Brito GA .
Sci Rep 2021 11 (1) 13273 type
MALDI-TOF MS: an alternative approach for ribotyping Clostridioides difficile isolates in Brazil.
Gouveia CL , Abreu PTC , Hercules M , John B , Cavalcanti Pilotto DRM , de Oliveira FE .
Anaerobe 2021 69 102351
Reactive astrocyte nomenclature, definitions, and future directions.
Escartin C , Galea E , Lakatos A , O'Callaghan JP , Petzold GC , Serrano-Pozo A , Steinhäuser C , Volterra A , Carmignoto G , Agarwal A , Allen NJ , Araque A , Barbeito L , Barzilai A , Bergles DE , Bonvento G , Butt AM , Chen WT , Cohen-Salmon M , Cunningham C , Deneen B , De Strooper B , Díaz-Castro B , Farina C , Freeman M , Gallo V , Goldman JE , Goldman SA , Götz M , Gutiérrez A , Haydon PG , Heiland DH , Hol EM , Holt MG , Iino M , Kastanenka KV , Kettenmann H , Khakh BS , Koizumi S , Lee CJ , Liddelow SA , MacVicar BA , Magistretti P , Messing A , Mishra A , Molofsky AV , Murai KK , Norris CM , Okada S , Oliet SHR , Oliveira JF , Panatier A , Parpura V , Pekna M , Pekny M , Pellerin L , Perea G , Pérez-Nievas BG , Pfrieger FW , Poskanzer KE , Quintana FJ , Ransohoff RM , Riquelme-Perez M , Robel S , Rose CR , Rothstein JD , Rouach N , Rowitch DH , Semyanov A , Sirko S , Sontheimer H , Swanson RA , Vitorica J , Wanner IB , Wood LB , Wu J , Zheng B , Zimmer ER , Zorec R , Sofroniew MV , Verkhratsky A .
Nat Neurosci 2021 24 (3) 312-325
High prevalence of Hepatitis C Virus infection among people who use crack cocaine in an important international drug trafficking route in Central-West Region Brazil.
Castro VOL , Kamili S , Forbi JC , Stabile AC , da Silva EF , do Valle Leone de Oliveira SM , de Carvalho PRT , Puga MAM , Tanaka TSO , do Lago BV , Ibanhes ML , Araujo A , Tejada-Strop A , Lin Y , Xia GL , Sue A , Teles SA , Motta-Castro ARC .
Infect Genet Evol 2020 85 104488 type
Understanding the Emergence of Multidrug-Resistant Candida : Using Whole-Genome Sequencing to Describe the Population Structure of Candida haemulonii Species Complex.
Gade L , Munoz JF , Sheth M , Wagner D , Berkow EL , Forsberg K , Jackson BR , Ramos-Castro R , Escandon P , Dolande M , Ben-Ami R , Espinosa-Bode A , Caceres DH , Lockhart SR , Cuomo CA , Litvintseva AP .
Front Genet 2020 11 554 type
The effect of variant interference on de novo assembly for viral deep sequencing.
Castro CJ , Marine RL , Ramos E , Ng TFF .
BMC Genomics 2020 21 (1) 421 type
Comparison of Illumina MiSeq and the Ion Torrent PGM and S5 platforms for whole-genome sequencing of picornaviruses and caliciviruses.
Marine RL , Magana LC , Castro CJ , Zhao K , Montmayeur AM , Schmidt A , Diez-Valcarce M , Fan Ng TF , Vinje J , Burns CC , Allan Nix W , Rota PA , Oberste MS .
J Virol Methods 2020 280 113865
Zika Virus Surveillance at the Human-Animal Interface in West-Central Brazil, 2017-2018.
Pauvolid-Correa A , Goncalves Dias H , Marina Siqueira Maia L , Porfirio G , Oliveira Morgado T , Sabino-Santos G , Helena Santa Rita P , Teixeira Gomes Barreto W , Carvalho de Macedo G , Marinho Torres J , Arruda Gimenes Nantes W , Martins Santos F , Oliveira de Assis W , Castro Rucco A , Mamoru Dos Santos Yui R , Bosco Vilela Campos J , Rodrigues Leandro ESilva R , da Silva Ferreira R , Aparecido da Silva Neves N , Charlles de Souza Costa M , Ramos Martins L , Marques de Souza E , Dos Santos Carvalho M , Goncalves Lima M , de Cassia Goncalves Alves F , Humberto Guimaraes Riquelme-Junior L , Luiz Batista Figueiro L , Fernandes Gomes de Santana M , Gustavo Rodrigues Oliveira Santos L , Serra Medeiros S , Lopes Seino L , Hime Miranda E , Henrique Rezende Linhares J , de Oliveira Santos V , Almeida da Silva S , Araujo Lucio K , Silva Gomes V , de Araujo Oliveira A , Dos Santos Silva J , de Almeida Marques W , Schafer Marques M , Junior Franca de Barros J , Campos L , Couto-Lima D , Coutinho Netto C , Strussmann C , Panella N , Hannon E , Cristina de Macedo B , Ramos de Almeida J , Ramos Ribeiro K , Carolina Barros de Castro M , Pratta Campos L , Paula Rosa Dos Santos A , Marino de Souza I , de Assis Bianchini M , Helena Ramiro Correa S , Ordones Baptista Luz R , Dos Santos Vieira A , Maria de Oliveira Pinto L , Azeredo E , Tadeu Moraes Figueiredo L , Augusto Fonseca Alencar J , Maria Barbosa de Lima S , Miraglia Herrera H , Dezengrini Shlessarenko R , Barreto Dos Santos F , Maria Bispo de Filippis A , Salyer S , Montgomery J , Komar N .
Viruses 2019 11 (12) type
Nearly Complete Genome Sequence of an Echovirus 30 Strain from a Cluster of Aseptic Meningitis Cases in California, September 2017.
Pan CY , Huynh T , Padilla T , Chen A , Ng TFF , Marine RL , Castro CJ , Nix WA , Wadford DA .
Microbiol Resour Announc 2019 8 (44) type
Outbreak of diarrhoea in piglets caused by novel rotavirus genotype G4P[49] in north-western district of Bangladesh, February 2014.
Sarkar S , Dioh Esona M , Gautam R , Castro CJ , Ng TFF , Haque W , Khan SU , Hossain ME , Rahman MZ , Gurley ES , Kennedy ED , Bowen MD , Parashar UD , Rahman M .
Transbound Emerg Dis 2019 67 (1) 442-449 type
Technology for the prevention of antimicrobial resistance and healthcare-associated infections; 2017 Geneva IPC-Think Tank (Part 2).
Zingg W , Park BJ , Storr J , Ahmad R , Tarrant C , Castro-Sanchez E , Perencevich E , Widmer A , Krause KH , Kilpatrick C , Tomczyk S , Allegranzi B , Cardo D , Pittet D .
Antimicrob Resist Infect Control 2019 8 83
Complete Genome Sequences of Human Astrovirus Prototype Strains (Types 1 to 8).
Castro CJ , Reynolds E , Monroe SS , Marine RL , Vinje J .
Microbiol Resour Announc 2019 8 (7) type
Strengthening laboratory surveillance of viral pathogens: Experiences and lessons learned building next-generation sequencing capacity in Ghana.
Marine RL , Ntim NAA , Castro CJ , Attiku KO , Pratt D , Duker E , Agbosu E , Ng TFF , Gatei W , Obodai E , Odoom JK , Walker CL , Rota PA , Oberste MS , Ampofo WK , Balajee SA .
Int J Infect Dis 2019 81 231-234 type
imGLAD: accurate detection and quantification of target organisms in metagenomes.
Castro JC , Rodriguez RLm , Harvey WT , Weigand MR , Hatt JK , Carter MQ , Konstantinidis KT .
PeerJ 2018 6 e5882
Characterization of the Genome Sequences of Enterovirus C109 from Two Respiratory Disease Cases in Florida, 2016.
Ng TFF , Yglesias JA , Stevenson-Yuen TA , Wolfe CM , Cone MR , Heberlein-Larson LA , Maher K , Rogers S , Chern SWW , Montmayeur A , Castro C , Nix WA .
Microbiol Resour Announc 2018 7 (3) type
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