CDC-Authored Genomics and Precision Health Publications Database

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Last data update: Dec 09, 2024. (Total: 6442 publications)

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Records 1-30 (of 79 Records)

Query Trace: Beall B[original query]
Genomic cluster formation among invasive group A streptococcal infections in the USA: a whole-genome sequencing and population-based surveillance study Li Y , Rivers J , Mathis S , Li Z , Chochua S , Metcalf BJ , Beall B , McGee L . Lancet Microbe 2024 100927
Increased proportions of invasive pneumococcal disease cases amongs adults experiencing homelessness sets stage for new serotype 4 capsular-switch recombinant Beall B , Chochua S , Metcalf B , Lin W , Tran T , Li Z , Li Y , Bentz ML , Sheth M , Osis G , McGee L . J Infect Dis 2024
The emergent invasive serotype 4 ST10172 strain acquires vanG type vancomycin-resistance element: A case of a 66-year-old with bacteremic pneumococcal pneumonia Chochua S , Beall B , Lin W , Tran T , Rivers J , Li Z , Arvay ML , Kobayashi M , Houston J , Arias S , McGee L . J Infect Dis 2024
Recombinational exchange of M-fibril and T-pilus genes generates extensive cell surface diversity in the global group A Streptococcus population Bessen DE , Beall BW , Hayes A , Huang W , DiChiara JM , Velusamy S , Tettelin H , Jolley KA , Fallon JT , Chochua S , Alobaidallah MSA , Higgs C , Barnett TC , Steemson JT , Proft T , Davies MR . mBio 2024 e0069324
Inter-species gene flow drives ongoing evolution of Streptococcus pyogenes and Streptococcus dysgalactiae subsp. equisimilis Xie O , Morris JM , Hayes AJ , Towers RJ , Jespersen MG , Lees JA , Ben Zakour NL , Berking O , Baines SL , Carter GP , Tonkin-Hill G , Schrieber L , McIntyre L , Lacey JA , James TB , Sriprakash KS , Beatson SA , Hasegawa T , Giffard P , Steer AC , Batzloff MR , Beall BW , Pinho MD , Ramirez M , Bessen DE , Dougan G , Bentley SD , Walker MJ , Currie BJ , Tong SYC , McMillan DJ , Davies MR . Nat Commun 2024 15 (1) 2286
A novel invasive Streptococcus pyogenes variant sublineage derived through recombinational replacement of the emm12 genomic region Unoarumhi Y , Davis ML , Rowe LA , Mathis S , Li Z , Chochua S , Li Y , McGee L , Metcalf BJ , Lee JS , Beall B . Sci Rep 2023 13 (1) 21510
Expansion of invasive group A streptococcus M1(uk) lineage in active bacterial core surveillance, United States, 2019‒2021 Li Y , Rivers J , Mathis S , Li Z , Chochua S , Metcalf BJ , Beall B , Onukwube J , Gregory CJ , McGee L . Emerg Infect Dis 2023 29 (10) 2116-2120
Invasive Group A Streptococcal Penicillin Binding Protein 2× Variants Associated with Reduced Susceptibility to β-Lactam Antibiotics in the United States, 2015-2021. Chochua S , Metcalf B , Li Z , Mathis S , Tran T , Rivers J , Fleming-Dutra KE , Li Y , McGee L , Beall B . Antimicrob Agents Chemother 2022 66 (9) e0080222
Continued Increase of Erythromycin- and Clindamycin-Nonsusceptibility among Invasive Group A Streptococci Driven by Genomic Clusters, USA, 2018-2019. Li Y , Rivers J , Mathis S , Li Z , McGee L , Chochua S , Metcalf BJ , Fleming-Dutra KE , Nanduri SA , Beall B . Clin Infect Dis 2022 76 (3) e1266-e1269
Cluster Transmission Drives Invasive Group A Streptococcus Disease Within the US and is Focused on Communities Experiencing Disadvantage. Metcalf B , Nanduri S , Chochua S , Li Y , Fleming-Dutra K , McGee L , Beall B . J Infect Dis 2022 226 (3) 546-553
A Streptococcus pneumoniae lineage usually associated with pneumococcal conjugate vaccine (PCV) serotypes is the most common cause of serotype 35B invasive disease in South Africa, following routine use of PCV. Ndlangisa KM , du Plessis M , Lo S , de Gouveia L , Chaguza C , Antonio M , Kwambana-Adams B , Cornick J , Everett DB , Dagan R , Hawkins PA , Beall B , Corso A , Grassi Almeida SC , Ochoa TJ , Obaro S , Shakoor S , Donkor ES , Gladstone RA , Ho PL , Paragi M , Doiphode S , Srifuengfung S , Ford R , Moïsi J , Saha SK , Bigogo G , Sigauque B , Eser Ö K , Elmdaghri N , Titov L , Turner P , Kumar KLR , Kandasamy R , Egorova E , Ip M , Breiman RF , Klugman KP , McGee L , Bentley SD , von Gottberg A , The Global Pneumococcal Sequencing Consortium . Microb Genom 2022 8 (4)
Invasive pneumococcal disease clusters disproportionally impact persons experiencing homelessness, injecting drug users, and the western United States. Beall B , Chochua S , Li Z , Tran T , Varghese J , McGee L , Li Y , Metcalf B . J Infect Dis 2022 226 (2) 332-341
Genomic Characterization of Group A Streptococci Causing Pharyngitis and Invasive Disease in Colorado, USA, June 2016 - April 2017. Li Y , Dominguez S , Nanduri SA , Rivers J , Mathis S , Li Z , McGee L , Chochua S , Metcalf BJ , Van Beneden CA , Beall B , Miller L . J Infect Dis 2021 225 (10) 1841-1851
Streptococcus pneumoniae serotypes that frequently colonise the human nasopharynx are common recipients of penicillin-binding protein gene fragments from Streptococcus mitis. Kalizang'oma A , Chaguza C , Gori A , Davison C , Beleza S , Antonio M , Beall B , Goldblatt D , Kwambana-Adams B , Bentley SD , Heyderman RS . Microb Genom 2021 7 (9)
The role of interspecies recombinations in the evolution of antibiotic resistant pneumococci. D'Aeth JC , van der Linden MPG , McGee L , De Lencastre H , Turner P , Song JH , Lo SW , Gladstone RA , Sa-Leao R , Ko KS , Hanage WP , Breiman RF , Beall B , Bentley SD , Croucher NJ . Elife 2021 10
Patterns of antibiotic nonsusceptibility among invasive group A Streptococcus infections-United States, 2006-2017. Fay K , Onukwube J , Chochua S , Schaffner W , Cieslak P , Lynfield R , Muse A , Smelser C , Harrison LH , Farley M , Petit S , Alden N , Apostal M , Vagnone PS , Nanduri S , Beall B , Van Beneden CA . Clin Infect Dis 2021 73 (11) 1957-1964
Serotype-Switch Variant of Multidrug-Resistant Streptococcus pneumoniae Sequence Type 271. Scherer EM , Beall B , Metcalf B . Emerg Infect Dis 2021 27 (6) 1689-1692
Low but Increasing Prevalence of Reduced Beta-lactam Susceptibility Among Invasive Group B Streptococcal Isolates, US Population-Based Surveillance, 1998-2018. Kobayashi M , McGee L , Chochua S , Apostol M , Alden NB , Farley MM , Harrison LH , Lynfield R , Vagnone PS , Smelser C , Muse A , Thomas AR , Deng L , Metcalf BJ , Beall BW , Schrag SJ . Open Forum Infect Dis 2021 8 (2) ofaa634
Invasive pneumococcal strain distributions and isolate clusters associated with persons experiencing homelessness during 2018. Metcalf BJ , Chochua S , Walker H , Tran T , Li Z , Varghese J , Snippes Vagnone PM , Lynfield R , McGee L , Li Y , Pilishvili T , Beall B . Clin Infect Dis 2020 72 (12) e948-e956
Features of Streptococcus agalactiae strains recovered from pregnant women and newborns attending different hospitals in Ethiopia. Ali MM , Woldeamanuel Y , Asrat D , Fenta DA , Beall B , Schrag S , McGee L . BMC Infect Dis 2020 20 (1) 848
Sequential quadriplex real-time PCR for identifying 20 common emm types of Group A Streptococcus . Velusamy S , Jordak K , Kupor M , Chochua S , McGee L , Beall B . J Clin Microbiol 2020 59 (1)
Upsurge of conjugate vaccine serotype 4 invasive pneumococcal disease clusters among adults experiencing homelessness in California, Colorado, and New Mexico. Beall B , Walker H , Tran T , Li Z , Varghese J , McGee L , Li Y , Metcalf BJ , Gierke R , Mosites E , Chochua S , Pilishvili T . J Infect Dis 2020 223 (7) 1241-1249
Genomic Surveillance of Streptococcus pyogenes Strains Causing Invasive Disease, United States, 2016-2017. Li Y , Rivers J , Mathis S , Li Z , Velusamy S , Nanduri SA , Van Beneden CA , Snippes-Vagnone P , Lynfield R , McGee L , Chochua S , Metcalf BJ , Beall B . Front Microbiol 2020 11 1547
Visualizing variation within Global Pneumococcal Sequence Clusters (GPSCs) and country population snapshots to contextualize pneumococcal isolates. Gladstone RA , Lo SW , Goater R , Yeats C , Taylor B , Hadfield J , Lees JA , Croucher NJ , van Tonder AJ , Bentley LJ , Quah FX , Blaschke AJ , Pershing NL , Byington CL , Balaji V , Hryniewicz W , Sigauque B , Ravikumar KL , Almeida SCG , Ochoa TJ , Ho PL , du Plessis M , Ndlangisa KM , Cornick JE , Kwambana-Adams B , Benisty R , Nzenze SA , Madhi SA , Hawkins PA , Pollard AJ , Everett DB , Antonio M , Dagan R , Klugman KP , von Gottberg A , Metcalf BJ , Li Y , Beall BW , McGee L , Breiman RF , Aanensen DM , Bentley SD . Microb Genom 2020 6 (5)
Updated emm-typing protocol for Streptococcus pyogenes. Frost HR , Davies MR , Velusamy S , Delforge V , Erhart A , Darboe S , Steer A , Walker MJ , Beall B , Botteaux A , Smeesters PR . Clin Microbiol Infect 2020 26 (7) 946 e5-946 e8
Multistate, population-based distributions of candidate vaccine targets, clonal complexes, and resistance features of invasive Group B Streptococci within the US: 2015-2017. McGee L , Chochua S , Li Z , Mathis S , Rivers J , Metcalf B , Ryan A , Alden N , Farley MM , Harrison LH , Snippes Vagnone P , Lynfield R , Smelser C , Muse A , Thomas AR , Schrag S , Beall BW . Clin Infect Dis 2020 72 (6) 1004-1013
Analysis of Global Collection of Group A Streptococcus Genomes Reveals that the Majority Encode a Trio of M and M-Like Proteins. Frost HR , Davies MR , Delforge V , Lakhloufi D , Sanderson-Smith M , Srinivasan V , Steer AC , Walker MJ , Beall B , Botteaux A , Smeesters PR . mSphere 2020 5 (1)
A mosaic tetracycline resistance gene tet(S/M) detected in an MDR pneumococcal CC230 lineage that underwent capsular switching in South Africa. Lo SW , Gladstone RA , van Tonder AJ , Du Plessis M , Cornick JE , Hawkins PA , Madhi SA , Nzenze SA , Kandasamy R , Ravikumar KL , Elmdaghri N , Kwambana-Adams B , Almeida SCG , Skoczynska A , Egorova E , Titov L , Saha SK , Paragi M , Everett DB , Antonio M , Klugman KP , Li Y , Metcalf BJ , Beall B , McGee L , Breiman RF , Bentley SD , von Gottberg A . J Antimicrob Chemother 2019 75 (3) 512-520
Streptococcus pyogenes pbp2x Mutation Confers Reduced Susceptibility to β-lactam antibiotics. Vannice K , Ricaldi J , Nanduri S , Fang FC , Lynch J , Bryson-Cahn C , Wright T , Duchin J , Kay M , Chochua S , Van Beneden C , Beall B . Clin Infect Dis 2019 71 (1) 201-204
Multistate population and whole genome sequence based strain surveillance of invasive pneumococci recovered in the United States during 2017. Varghese J , Chochua S , Tran T , Walker H , Li Z , Snippes Vagnone PM , Lynfield R , McGee L , Li Y , Metcalf B , Pilishvili T , Beall B . Clin Microbiol Infect 2019 26 (4) 512 e1-512 e10