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CDC-Authored Genomics and Precision Health Publications Database|Home|Public Health Genomics and Precision Health Knowledge Base (PHGKB)

CDC-Authored Genomics and Precision Health Publications Database


Last data update: Sep 30, 2024. (Total: 6327 publications)
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Records 1-30 (of 32 Records)
Query Trace: Barnes JR[original query]
Antigenic drift and subtype interference shape A(H3N2) epidemic dynamics in the United States
Perofsky AC , Huddleston J , Hansen CL , Barnes JR , Rowe T , Xu X , Kondor R , Wentworth DE , Lewis N , Whittaker L , Ermetal B , Harvey R , Galiano M , Daniels RS , McCauley JW , Fujisaki S , Nakamura K , Kishida N , Watanabe S , Hasegawa H , Sullivan SG , Barr IG , Subbarao K , Krammer F , Bedford T , Viboud C .
Elife 2024 13 type
Wastewater surveillance for influenza A virus and H5 subtype concurrent with the highly pathogenic avian influenza A(H5N1) virus outbreak in cattle and poultry and associated human cases - United States, May 12-July 13, 2024
Louis S , Mark-Carew M , Biggerstaff M , Yoder J , Boehm AB , Wolfe MK , Flood M , Peters S , Stobierski MG , Coyle J , Leslie MT , Sinner M , Nims D , Salinas V , Lustri L , Bojes H , Shetty V , Burnor E , Rabe A , Ellison-Giles G , Yu AT , Bell A , Meyer S , Lynfield R , Sutton M , Scholz R , Falender R , Matzinger S , Wheeler A , Ahmed FS , Anderson J , Harris K , Walkins A , Bohra S , O'Dell V , Guidry VT , Christensen A , Moore Z , Wilson E , Clayton JL , Parsons H , Kniss K , Budd A , Mercante JW , Reese HE , Welton M , Bias M , Webb J , Cornforth D , Santibañez S , Soelaeman RH , Kaur M , Kirby AE , Barnes JR , Fehrenbach N , Olsen SJ , Honein MA .
MMWR Morb Mortal Wkly Rep 2024 73 (37) 804-809 type
Late-season influenza vaccine effectiveness against medically attended outpatient illness, United States, December 2022-April 2023
Chung JR , Shirk P , Gaglani M , Mutnal MB , Nowalk MP , Moehling Geffel K , House SL , Curley T , Wernli KJ , Kiniry EL , Martin ET , Vaughn IA , Murugan V , Lim ES , Saade E , Faryar K , Williams OL , Walter EB , Price AM , Barnes JR , DaSilva J , Kondor R , Ellington S , Flannery B .
Influenza Other Respir Viruses 2024 18 (6) e13342
Outbreak of highly pathogenic avian influenza A(H5N1) viruses in U.S. dairy cattle and detection of two human cases - United States, 2024
Garg S , Reed C , Davis CT , Uyeki TM , Behravesh CB , Kniss K , Budd A , Biggerstaff M , Adjemian J , Barnes JR , Kirby MK , Basler C , Szablewski CM , Richmond-Crum M , Burns E , Limbago B , Daskalakis DC , Armstrong K , Boucher D , Shimabukuro TT , Jhung MA , Olsen SJ , Dugan V .
MMWR Morb Mortal Wkly Rep 2024 73 (21) 501-505 type
Antigenic characterization of circulating and emerging SARS-CoV-2 variants in the U.S. Throughout the Delta to Omicron waves
Di H , Pusch EA , Jones J , Kovacs NA , Hassell N , Sheth M , Lynn KS , Keller MW , Wilson MM , Keong LM , Cui D , Park SH , Chau R , Lacek KA , Liddell JD , Kirby MK , Yang G , Johnson M , Thor S , Zanders N , Feng C , Surie D , DeCuir J , Lester SN , Atherton L , Hicks H , Tamin A , Harcourt JL , Coughlin MM , Self WH , Rhoads JP , Gibbs KW , Hager DN , Shapiro NI , Exline MC , Lauring AS , Rambo-Martin B , Paden CR , Kondor RJ , Lee JS , Barnes JR , Thornburg NJ , Zhou B , Wentworth DE , Davis CT .
Vaccines (Basel) 2024 12 (5) type
Highly pathogenic avian influenza A(H5N1) virus infection in a dairy farm worker
Uyeki TM , Milton S , Abdul Hamid C , Reinoso Webb C , Presley SM , Shetty V , Rollo SN , Martinez DL , Rai S , Gonzales ER , Kniss KL , Jang Y , Frederick JC , De La Cruz JA , Liddell J , Di H , Kirby MK , Barnes JR , Davis CT .
N Engl J Med 2024 type
Genetic drift and purifying selection shape within-host influenza A virus populations during natural swine infections
VanInsberghe D , McBride DS , DaSilva J , Stark TJ , Lau MSY , Shepard SS , Barnes JR , Bowman AS , Lowen AC , Koelle K .
PLoS Pathog 2024 20 (4) e1012131 type
In-field detection and characterization of B/Victoria lineage deletion variant viruses causing early influenza activity and an outbreak in Louisiana, 2019
Shu B , Wilson MM , Keller MW , Tran H , Sokol T , Lee G , Rambo-Martin BL , Kirby MK , Hassell N , Haydel D , Hand J , Wentworth DE , Barnes JR .
Influenza Other Respir Viruses 2024 18 (1) e13246 type
Genetic and potential antigenic evolution of influenza A(H1N1)pdm09 viruses circulating in Kenya during 2009-2018 influenza seasons
Owuor DC , de Laurent ZR , Nyawanda BO , Emukule GO , Kondor R , Barnes JR , Nokes DJ , Agoti CN , Chaves SS .
Sci Rep 2023 13 (1) 22342 type
Targeted amplification and genetic sequencing of the severe acute respiratory syndrome coronavirus 2 surface glycoprotein
Keller MW , Keong LM , Rambo-Martin BL , Hassell N , Lacek KA , Wilson MM , Kirby MK , Liddell J , Owuor DC , Sheth M , Madden J , Lee JS , Kondor RJ , Wentworth DE , Barnes JR .
Microbiol Spectr 2023 e0298223 type
Author Correction: Multiplexed CRISPR-based microfluidic platform for clinical testing of respiratory viruses and identification of SARS-CoV-2 variants
Welch NL , Zhu M , Hua C , Weller J , Mirhashemi ME , Nguyen TG , Mantena S , Bauer MR , Shaw BM , Ackerman CM , Thakku SG , Tse MW , Kehe J , Uwera MM , Eversley JS , Bielwaski DA , McGrath G , Braidt J , Johnson J , Cerrato F , Moreno GK , Krasilnikova LA , Petros BA , Gionet GL , King E , Huard RC , Jalbert SK , Cleary ML , Fitzgerald NA , Gabriel SB , Gallagher GR , Smole SC , Madoff LC , Brown CM , Keller MW , Wilson MM , Kirby MK , Barnes JR , Park DJ , Siddle KJ , Happi CT , Hung DT , Springer M , MacInnis BL , Lemieux JE , Rosenberg E , Branda JA , Blainey PC , Sabeti PC , Myhrvold C .
Nat Med 2023
Influenza A virus multicycle replication yields comparable viral population emergence in human respiratory and ocular cell types
Kieran TJ , DaSilva J , Stark TJ , York IA , Pappas C , Barnes JR , Maines TR , Belser JA .
Microbiol Spectr 2023 11 (4) e0116623
Author Correction: Direct RNA Sequencing of the Coding Complete Influenza A Virus Genome.
Keller MW , Rambo-Martin BL , Wilson MM , Ridenour CA , Shepard SS , Stark TJ , Neuhaus EB , Dugan VG , Wentworth DE , Barnes JR .
Sci Rep 2018 8 (1) 15746
SARS-CoV-2 Delta-Omicron Recombinant Viruses, United States.
Lacek KA , Rambo-Martin BL , Batra D , Zheng XY , Hassell N , Sakaguchi H , Peacock T , Groves N , Keller M , Wilson MM , Sheth M , Davis ML , Borroughs M , Gerhart J , Shepard SS , Cook PW , Lee J , Wentworth DE , Barnes JR , Kondor R , Paden CR .
Emerg Infect Dis 2022 28 (7) 1442-1445 type
Differential neutralization and inhibition of SARS-CoV-2 variants by antibodies elicited by COVID-19 mRNA vaccines.
Wang L , Kainulainen MH , Jiang N , Di H , Bonenfant G , Mills L , Currier M , Shrivastava-Ranjan P , Calderon BM , Sheth M , Mann BR , Hossain J , Lin X , Lester S , Pusch EA , Jones J , Cui D , Chatterjee P , Jenks MH , Morantz EK , Larson GP , Hatta M , Harcourt JL , Tamin A , Li Y , Tao Y , Zhao K , Lacek K , Burroughs A , Wang W , Wilson M , Wong T , Park SH , Tong S , Barnes JR , Tenforde MW , Self WH , Shapiro NI , Exline MC , Files DC , Gibbs KW , Hager DN , Patel M , Halpin AL , McMullan LK , Lee JS , Xia H , Xie X , Shi PY , Davis CT , Spiropoulou CF , Thornburg NJ , Oberste MS , Dugan VG , Wentworth DE , Zhou B .
Nat Commun 2022 13 (1) 4350 type
Multiplexed CRISPR-based microfluidic platform for clinical testing of respiratory viruses and identification of SARS-CoV-2 variants.
Welch NL , Zhu M , Hua C , Weller J , Mirhashemi ME , Nguyen TG , Mantena S , Bauer MR , Shaw BM , Ackerman CM , Thakku SG , Tse MW , Kehe J , Uwera MM , Eversley JS , Bielwaski DA , McGrath G , Braidt J , Johnson J , Cerrato F , Moreno GK , Krasilnikova LA , Petros BA , Gionet GL , King E , Huard RC , Jalbert SK , Cleary ML , Fitzgerald NA , Gabriel SB , Gallagher GR , Smole SC , Madoff LC , Brown CM , Keller MW , Wilson MM , Kirby MK , Barnes JR , Park DJ , Siddle KJ , Happi CT , Hung DT , Springer M , MacInnis BL , Lemieux JE , Rosenberg E , Branda JA , Blainey PC , Sabeti PC , Myhrvold C .
Nat Med 2022 28 (5) 1083-1094
Vaccine Effectiveness Against Life-Threatening Influenza Illness in US Children.
Olson SM , Newhams MM , Halasa NB , Feldstein LR , Novak T , Weiss SL , Coates BM , Schuster JE , Schwarz AJ , Maddux AB , Hall MW , Nofziger RA , Flori HR , Gertz SJ , Kong M , Sanders RC , Irby K , Hume JR , Cullimore ML , Shein SL , Thomas NJ , Stewart LS , Barnes JR , Patel MM , Randolph AG .
Clin Infect Dis 2022 75 (2) 230-238 type
Characterizing the Countrywide Epidemic Spread of Influenza A(H1N1)pdm09 Virus in Kenya between 2009 and 2018.
Owuor DC , de Laurent ZR , Kikwai GK , Mayieka LM , Ochieng M , Müller NF , Otieno NA , Emukule GO , Hunsperger EA , Garten R , Barnes JR , Chaves SS , Nokes DJ , Agoti CN .
Viruses 2021 13 (10)
SARS-CoV-2 spike D614G change enhances replication and transmission.
Zhou B , Thi Nhu Thao T , Hoffmann D , Taddeo A , Ebert N , Labroussaa F , Pohlmann A , King J , Steiner S , Kelly JN , Portmann J , Halwe NJ , Ulrich L , Trüeb BS , Fan X , Hoffmann B , Wang L , Thomann L , Lin X , Stalder H , Pozzi B , de Brot S , Jiang N , Cui D , Hossain J , Wilson M , Keller M , Stark TJ , Barnes JR , Dijkman R , Jores J , Benarafa C , Wentworth DE , Thiel V , Beer M .
Nature 2021 592 (7852) 122-127 type
Effect of antigenic drift on influenza vaccine effectiveness in the United States - 2019-2020.
Tenforde MW , Kondor RJG , Chung JR , Zimmerman RK , Nowalk MP , Jackson ML , Jackson LA , Monto AS , Martin ET , Belongia EA , McLean HQ , Gaglani M , Rao A , Kim SS , Stark TJ , Barnes JR , Wentworth D , Patel MM , Flannery B .
Clin Infect Dis 2020 73 (11) e4244-e4250
Influenza vaccine effectiveness against hospitalization in the United States, 2019-2020.
Tenforde MW , Talbot HK , Trabue CH , Gaglani M , McNeal TM , Monto AS , Martin ET , Zimmerman RK , Silveira F , Middleton DB , Olson SM , Garten Kondor RJ , Barnes JR , Ferdinands JM , Patel MM .
J Infect Dis 2020 224 (5) 813-820 type
Detection and discrimination of influenza B Victoria lineage deletion variant viruses by real-time RT-PCR.
Shu B , Kirby MK , Warnes C , Sessions WM , Davis WG , Liu J , Wilson MM , Lindstrom S , Wentworth DE , Barnes JR .
Euro Surveill 2020 25 (41) type
A heterogenous swine show circuit drives zoonotic transmission of influenza A viruses in the United States.
Nelson MI , Perofsky A , McBride DS , Rambo-Martin BL , Wilson MM , Barnes JR , van Bakel H , Khan Z , Dutta J , Nolting JM , Bowman AS .
J Virol 2020 94 (24) type
Integrating genotypes and phenotypes improves long-term forecasts of seasonal influenza A/H3N2 evolution.
Huddleston J , Barnes JR , Rowe T , Xu X , Kondor R , Wentworth DE , Whittaker L , Ermetal B , Daniels RS , McCauley JW , Fujisaki S , Nakamura K , Kishida N , Watanabe S , Hasegawa H , Barr I , Subbarao K , Barrat-Charlaix P , Neher RA , Bedford T .
Elife 2020 9 type
Genetically and antigenically divergent influenza A(H9N2) viruses exhibit differential replication and transmission phenotypes in mammalian models.
Belser JA , Sun X , Brock N , Pappas C , Pulit-Penaloza JA , Zeng H , Jang Y , Jones J , Carney PJ , Chang J , Van Long N , Diep NT , Thor S , Di H , Yang G , Cook PW , Creager HM , Wang D , McFarland J , Van Dong P , Wentworth DE , Tumpey TM , Barnes JR , Stevens J , Davis CT , Maines TR .
J Virol 2020 94 (17)
Massively multiplexed nucleic acid detection using Cas13.
Ackerman CM , Myhrvold C , Thakku SG , Freije CA , Metsky HC , Yang DK , Ye SH , Boehm CK , Kosoko-Thoroddsen TF , Kehe J , Nguyen TG , Carter A , Kulesa A , Barnes JR , Dugan VG , Hung DT , Blainey PC , Sabeti PC .
Nature 2020 582 (7811) 277-282 type
Development of an RNA strand-specific hybridization assay to differentiate replicating versus non-replicating influenza A virus.
Yang G , Hodges EN , Winter J , Zanders N , Shcherbik S , Bousse T , Murray JR , Muraduzzaman AKM , Rahman M , Alamgir ASM , Sabrina Flora M , Blanton L , Barnes JR , Wentworth DE , Davis CT .
J Clin Microbiol 2020 58 (6) type
Detection of highly pathogenic avian influenza A(H5N6) viruses in waterfowl in Bangladesh.
Yang G , Chowdury S , Hodges E , Rahman MZ , Jang Y , Hossain ME , Jones J , Stark TJ , Di H , Cook PW , Ghosh S , Azziz-Baumgartner E , Barnes JR , Wentworth DE , Kennedy E , Davis CT .
Virology 2019 534 36-44 type
Direct RNA Sequencing of the Coding Complete Influenza A Virus Genome.
Keller MW , Rambo-Martin BL , Wilson MM , Ridenour CA , Shepard SS , Stark TJ , Neuhaus EB , Dugan VG , Wentworth DE , Barnes JR .
Sci Rep 2018 8 (1) 14408 type
Influenza-Associated Parotitis During the 2014-2015 Influenza Season in the United States.
Rolfes MA , Millman AJ , Talley P , Elbadawi LI , Kramer NA , Barnes JR , Blanton L , Davis JP , Cole S , Dreisig JJ , Garten R , Haupt T , Jackson MA , Kocharian A , Leifer D , Lynfield R , Martin K , McHugh L , Robinson S , Turabelidze G , Webber LA , Pearce Weinberg M , Wentworth DE , Finelli L , Jhung MA .
Clin Infect Dis 2018 67 (4) 485-492 type
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