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Advanced Molecular Detection Clips Database|AMD Clips|PHGKB

Pathogen Genomics and Health Database|AMD Clips|PHGKB
Publication Date: Nov 16, 2023


CONCEPTS / COMMENTS

Incongruence in the phylogenomics era.
Jacob L Steenwyk et al. Nat Rev Genet 2023 6 (12) 834-850

The HIV epidemic 40 years on.
Linda-Gail Bekker et al. Nat Rev Microbiol 2023 10 (12) 767-768

Data Sharing - A New Era for Research Funded by the U.S. Government.
Joseph S Ross et al. N Engl J Med 2023 11

Surveillance for variants of SARS-CoV-2 to inform risk assessments.
Homa Attar Cohen et al. Bull World Health Organ 2023 11 (11) 707-716

Strengthening influenza surveillance capacity in the Eastern Mediterranean Region: Nearly two decades of direct support from the United States Centers for Disease Control and Prevention.
Kinda Zureick et al. Influenza Other Respir Viruses 2023 11 (11) e13220 Brand



EVOLUTION / ECOLOGY / POPULATIONS

Population structure of Salmonella enterica Typhi in Harare, Zimbabwe (2012-19) before typhoid conjugate vaccine roll-out: a genomic epidemiology study.
Gaetan Thilliez et al. Lancet Microbe 2023 11

Genomic profiling of extended-spectrum β-lactamase-producing Escherichia coli from Pets in the United Arab Emirates: Unveiling colistin resistance mediated by mcr-1.1 and its probable transmission from chicken meat - A One Health perspective.
Ihab Habib et al. J Infect Public Health 2023 11

The emergence and diversification of a zoonotic pathogen from within the microbiota of intensively farmed pigs.
Gemma G R Murray et al. Proc Natl Acad Sci U S A 2023 11 (47) e2307773120

Viral genomic features predict orthopoxvirus reservoir hosts.
Katie K Tseng et al. bioRxiv 2023 11

Genetic drift and purifying selection shape within-host influenza A virus populations during natural swine infections.
David VanInsberghe et al. bioRxiv 2023 11



DETECTION / DIAGNOSIS

Recombinase Polymerase Amplification-Based Biosensors for Rapid Zoonoses Screening.
Xinrui Feng et al. Int J Nanomedicine 2023 11 6311-6331

Advantages and limitations of current diagnostic laboratory approaches in syphilis and congenital syphilis.
Weiping Cao et al. Expert Rev Anti Infect Ther 2023 11 Brand Brand

First identification of the SARS-COV-2/XBB.1.5 sublineage among indigenous COVID-19 cases through the influenza sentinel surveillance system in Niger.
Adamou Lagare et al. Heliyon 2023 11 (11) e20916 Brand

Monoclonal Antibodies as SARS-CoV-2 Serology Standards: Experimental Validation and Broader Implications for Correlates of Protection.
Lili Wang et al. Int J Mol Sci 2023 11 (21) Brand Brand

Untargeted metagenomic sequencing identifies Toscana virus in patients with idiopathic meningitis, southern Spain, 2015 to 2019.
Fabiana Gámbaro et al. Euro Surveill 2023 11 (45)

A novel duplex qualitative real-time PCR assay for the detection and differentiation of Plasmodium ovale curtisi and Plasmodium ovale wallikeri malaria.
Wenqiao He et al. medRxiv 2023 11

Detection of Anopheles stephensi Mosquitoes by Molecular Surveillance, Kenya.
Eric O Ochomo et al. Emerg Infect Dis 2023 11 (12)


EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION

Strain of Multidrug-Resistant Salmonella Newport Remains Linked to Travel to Mexico and U.S. Beef Products - United States, 2021-2022.
Laura Ford et al. MMWR Morb Mortal Wkly Rep 2023 11 (45) 1225-1229 Brand Brand

Investigation of an international water polo tournament in Czechia as a potential source for early introduction of the SARS-CoV-2 Omicron variant into Belgium, Switzerland and Germany, November 2021.
Christoph Rudin et al. Euro Surveill 2023 11 (45) Brand

Epidemiological characteristics of HIV transmission in southeastern China from 2015 to 2020 based on HIV molecular network.
Zhenghua Wang et al. Front Public Health 2023 11 1225883

Molecular epidemiology of HIV-1 among adult female sex workers at the Guatemala-Mexico border.
Olivia Springfield et al. Glob Public Health 2023 11 (1) 2278873



HOST-MICROBE INTERACTIONS

HLA-DQB1*06 and Select Neighboring HLA Variants Predict Chlamydia Reinfection Risk.
Kanupriya Gupta et al. Int J Mol Sci 2023 11 (21)

Genetic variants associated with hantavirus infection in a reservoir host are related to regulation of inflammation and immune surveillance.
Anna A Pérez-Umphrey et al. Infect Genet Evol 2023 11 105525

Co-evolution of immunity and seasonal influenza viruses.
Alvin X Han et al. Nat Rev Microbiol 2023 8 (12) 805-817

In silico prediction of interaction between Nipah virus attachment glycoprotein and host cell receptors Ephrin-B2 and Ephrin-B3 in domestic and peridomestic mammals.
Ananya Ferdous Hoque et al. Infect Genet Evol 2023 11 105516 Brand

T-Cell Exhaustion in HIV-1/Hepatitis C Virus Coinfection Is Reduced After Successful Treatment of Chronic Hepatitis C.
Kamila Caraballo Cortés et al. Open Forum Infect Dis 2023 11 (11) ofad514

The Bern Birth Cohort (BeBiCo) to study the development of the infant intestinal microbiota in a high-resource setting in Switzerland: rationale, design, and methods.
Luca Cecchini et al. BMC Pediatr 2023 11 (1) 560


Note: Brand indicates that at least one CDC-affiliated author; Brand indicates that the article addresses aspects of implementation or evaluation in clinical or public health practice.

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About AMD Clips

Clips are selected from a variety of sources, including PubMed, journal tables of contents, and online media. Special emphasis is given to the use of next-generation genetic sequencing in infectious disease public health surveillance, investigation, and development of new diagnostics and interventions. The collection is not comprehensive but aims to capture highlights, while surveying a wide range of topics. CDC-authored articles are flagged. Items marked I&E address aspects of implementation or evaluation in clinical or public health practice.


Disclaimer: Articles listed in the Public Health Knowledge Base are selected by the CDC Office of Public Health Genomics to provide current awareness of the literature and news. Inclusion in the update does not necessarily represent the views of the Centers for Disease Control and Prevention nor does it imply endorsement of the article's methods or findings. CDC and DHHS assume no responsibility for the factual accuracy of the items presented. The selection, omission, or content of items does not imply any endorsement or other position taken by CDC or DHHS. Opinion, findings and conclusions expressed by the original authors of items included in the update, or persons quoted therein, are strictly their own and are in no way meant to represent the opinion or views of CDC or DHHS. References to publications, news sources, and non-CDC Websites are provided solely for informational purposes and do not imply endorsement by CDC or DHHS.

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