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Advanced Molecular Detection Clips Database|AMD Clips|Public Health Genomics and Precision Health Knowledge Base (PHGKB) PHGKB Horizon Scan > Advanced Molecular Detection Clips


Update Date: Apr 11, 2024


CONCEPTS / COMMENTS

Where do the pathogens that cause surgical site infections come from?
Jack A Gilbert et al. Sci Transl Med 2024 4 (742) eado1449

Nationwide Genomic Surveillance and Response to COVID-19: The VA SeqFORCE and SeqCURE Consortiums.
Jay Krishnan et al. Fed Pract 2024 4 (11 Suppl 5) S44-S47 Brand

Organ-on-chip models for infectious disease research.
Raquel Alonso-Roman et al. Nat Microbiol 2024 3 (4) 891-904



EVOLUTION / ECOLOGY / POPULATIONS

New Vibrio cholerae sequences from Eastern and Southern Africa alter our understanding of regional cholera transmission.
Shaoming Xiao et al. medRxiv 2024 4

Correlation between bacterial microbiome and Legionella species in water from public bath facilities by 16S rRNA gene amplicon sequencing.
Jun-Ichi Kanatani et al. Microbiol Spectr 2024 2 (4) e0345923

Domestic dogs in indigenous Amazonian communities: Key players in Leptospira cycling and transmission?
Diego A Guzmán et al. PLoS Negl Trop Dis 2024 4 (4) e0011671

Genomic characterisation of the population structure and antibiotic resistance of Salmonella enterica serovar Infantis in Chile, 2009-2022.
Alejandro Piña-Iturbe et al. Lancet Reg Health Am 2024 3 100711

Bat species assemblage predicts coronavirus prevalence.
Magdalena Meyer et al. Nat Commun 2024 4 (1) 2887

Novel Oliveros-like Clade C Mammarenaviruses from Rodents in Argentina, 1990-2020.
Elizabeth Shedroff et al. Viruses 2024 3 (3) Brand

Genomic evolution of human respiratory syncytial virus during a decade (2013-2023): bridging the path to monoclonal antibody surveillance.
Maria Piñana et al. J Infect 2024 4 106153

Substantial viral diversity in bats and rodents from East Africa: insights into evolution, recombination, and cocirculation.
Daxi Wang et al. Microbiome 2024 4 (1) 72

The genomic evolutionary dynamics and global circulation patterns of respiratory syncytial virus.
Annefleur C Langedijk et al. Nat Commun 2024 4 (1) 3083

Genomics reveals heterogeneous Plasmodium falciparum transmission and selection signals in Zambia.
Abebe A Fola et al. Commun Med (Lond) 2024 4 (1) 67


PATHOGENICITY / ANTIMICROBIAL RESISTANCE

"Risk of death in Klebsiella pneumoniae bloodstream infections is associated with specific phylogenetic lineages.".
Aasmund Fostervold et al. J Infect 2024 4 106155

The recent rapid expansion of multidrug resistant Ural lineage Mycobacterium tuberculosis in Moldova.
Melanie H Chitwood et al. Nat Commun 2024 4 (1) 2962

Inferring Mycobacterium Tuberculosis Drug Resistance and Transmission using Whole-genome Sequencing in a High TB-burden Setting in China.
Yu Feng Fan et al. Biomed Environ Sci 2024 4 (2) 157-169

Expansion and transmission dynamics of high risk carbapenem-resistant Klebsiella pneumoniae subclones in China: An epidemiological, spatial, genomic analysis.
Qi Wang et al. Drug Resist Updat 2024 4 101083

Genetic determinants of resistance to antimicrobial therapeutics are rare in publicly available Clostridioides difficile genome sequences.
Baban Kolte et al. J Antimicrob Chemother 2024 4

Whole transcriptomic analysis reveals overexpression of salivary gland and cuticular proteins genes in insecticide-resistant Anopheles arabiensis from Western Kenya.
Diana Omoke et al. BMC Genomics 2024 3 (1) 313 Brand


DETECTION / DIAGNOSIS

Identification of pathogen composition in a Chinese population with iatrogenic and native vertebral osteomyelitis by using mNGS.
Qile Gao et al. Ann Med 2024 4 (1) 2337738

Comparison of metagenomic and traditional methods for diagnosis of E. coli enteric infections.
C Royer et al. mBio 2024 3 (4) e0342223

Dynamic SARS-CoV-2 surveillance model combining seroprevalence and wastewater concentrations for post-vaccine disease burden estimates.
Rochelle H Holm et al. Commun Med (Lond) 2024 4 (1) 70 Brand

First Molecular Detection of SARS-CoV-2 in Sewage and Wastewater in Ghana.
Ewurabena Oduma Duker et al. Biomed Res Int 2024 4 9975781 Brand

Implications of Measles Inclusion by Commercial Syndromic Polymerase Chain Reaction Panels - United States, May 2022-April 2023.
Christine M Thomas et al. MMWR Morb Mortal Wkly Rep 2024 3 (12) 260-264 Brand Brand

Health Department: Multiple States

Pathology and Monkeypox virus Localization in Tissues From Immunocompromised Patients With Severe or Fatal Mpox.
Jana M Ritter et al. J Infect Dis 2024 1 (Supplement_2) S219-S228 Brand


EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION

Investigation and response to an outbreak of Neisseria meningitidis serogroup Y ST-1466 urogenital infections, Australia.
M M Lahra et al. Commun Dis Intell (2018) 2024 4 Brand

Evidence from Whole Genome Sequencing of Aerosol Transmission of SARS-CoV-2 almost Five Hours after Hospital Room Turnover.
Michael E Charness et al. Am J Infect Control 2024 4

COVID-19 outbreak at a residential apartment building in Northern Ontario, Canada.
Dinna Lozano et al. Epidemiol Infect 2024 3 e53 Brand

Investigation of an mpox outbreak affecting many vaccinated persons in Chicago, IL-March 2023-June 2023.
Emily A G Faherty et al. Clin Infect Dis 2024 4 Brand Brand

Health Department: Illinois

Human adenovirus outbreak at a university campus monitored by wastewater and clinical surveillance.
Steven C Holland et al. medRxiv 2024 4 Brand



HOST-MICROBE INTERACTIONS

Proteome profiling of home-sampled dried blood spots reveals proteins of SARS-CoV-2 infections.
Claudia Fredolini et al. Commun Med (Lond) 2024 4 (1) 55

Human leukocyte antigen variants associate with BNT162b2 mRNA vaccine response.
Martina Esposito et al. Commun Med (Lond) 2024 4 (1) 63

Longitudinal dynamics of farmer and livestock nasal and faecal microbiomes and resistomes.
Bejan Mahmud et al. Nat Microbiol 2024 4 (4) 1007-1020


Note: Brand indicates that at least one CDC-affiliated author; Brand indicates that the article addresses aspects of implementation or evaluation in clinical or public health practice.

Content Index

References

About AMD Clips

Clips are selected from a variety of sources, including PubMed, journal tables of contents, and online media. Special emphasis is given to the use of next-generation genetic sequencing in infectious disease public health surveillance, investigation, and development of new diagnostics and interventions. The collection is not comprehensive but aims to capture highlights, while surveying a wide range of topics.

Note:

  • Brand indicates that at least one CDC-affiliated author.
  • Brand indicates that the article addresses aspects of implementation or evaluation in clinical or public health practice.
  • Health Department: identifies articles having authors affiliated with U.S. public health departments, either at the indicated state or its sub-jurisdictions (city, county); health departments in U.S. territories are labeled Other.

Disclaimer: Articles listed in the Public Health Knowledge Base are selected by the CDC Office of Public Health Genomics to provide current awareness of the literature and news. Inclusion in the update does not necessarily represent the views of the Centers for Disease Control and Prevention nor does it imply endorsement of the article's methods or findings. CDC and DHHS assume no responsibility for the factual accuracy of the items presented. The selection, omission, or content of items does not imply any endorsement or other position taken by CDC or DHHS. Opinion, findings and conclusions expressed by the original authors of items included in the update, or persons quoted therein, are strictly their own and are in no way meant to represent the opinion or views of CDC or DHHS. References to publications, news sources, and non-CDC Websites are provided solely for informational purposes and do not imply endorsement by CDC or DHHS.

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