Advanced Molecular Detection Clips Content (Published on 12/15/2022)
NEWS
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Two Decades After 9/11 Inquiry, a Similar Plan for Covid Stalls in Congress
Stolberg SG. New York Times, Dec 12, 2022. -
COVID spurs boom in genome sequencing for infectious diseases
Mallapaty S. Nature, Dec 15, 2022. -
Through $1.15B NIH Project, Researchers Look for Markers of Long COVID for Potential Dx Tests
Cima G. 360dx, Dec 6, 2022. -
A driver of monkeypox virus evolution?
Attwaters M. Nat Microbiol, Nov 17, 2022. -
An early lesson from the Uganda Ebola vaccine trial: Shots must be ready to go before the next outbreak strikes
Branswell H. STAT, Dec 13, 2022.
POLICY
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Preparing For and Preventing the Next Public Health Emergency: Lessons Learned from the Coronavirus Crisis
Select Committee on the Coronavirus Crisis, US House of Representatives, Dec 2022.
METHODS / TOOLS
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Application of CRISPR-Based Human and Bacterial Ribosomal RNA Depletion for SARS-CoV-2 Shotgun Metagenomic Sequencing.
Cerón Stacey et al. American journal of clinical pathology 2022 12
EVOLUTION / ECOLOGY / POPULATIONS
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Multidrug-resistant Acinetobacter pittii is adapting to and exhibiting potential succession aboard the International Space Station.
Tierney Braden T et al. Microbiome 2022 12 (1) 210 -
Pathogen genomics study of an early medieval community in Germany reveals extensive co-infections.
Bonczarowska Joanna H et al. Genome biology 2022 12 (1) 250 -
Comparative genomics of Campylobacter jejuni from clinical campylobacteriosis stool specimens.
Djeghout Bilal et al. Gut pathogens 2022 12 (1) 45 -
Inferring selection effects in SARS-CoV-2 with Bayesian Viral Allele Selection.
Jankowiak Martin et al. PLoS genetics 2022 12 (12) e1010540 -
Emergence and Potential Extinction of Genetic Lineages of Human Metapneumovirus between 2005 and 2021.
Groen Kevin et al. mBio 2022 12 e0228022 -
Nearly Complete Genome Sequences of Type 2 Sabin-Like Polioviruses from Northern Nigerian Poliovirus Surveillance, 2016 to 2018.
Zhao Kun et al. Microbiology resource announcements 2022 12 e0073522 -
Identification and characterization of novel lineage 1 Powassan virus strains in New York State.
Rachel E Lange et al. Emerg Microbes Infect 2022 12 (1) 2155585 -
Recombination shapes the 2022 monkeypox (mpox) outbreak.
Yeh Ting-Yu et al. Med (New York, N.Y.) 2022 12 (12) 824-826 -
Profiling genome-wide recombination in Epstein Barr virus reveals type-specific patterns and associations with endemic-Burkitt lymphoma.
Agwati Eddy O et al. Virology journal 2022 12 (1) 208 -
Early Genomic Surveillance and Phylogeographic Analysis of Getah Virus, a Reemerging Arbovirus, in Livestock in China.
Zhao Jin et al. Journal of virology 2022 12 e0109122 -
Geographical classification of malaria parasites through applying machine learning to whole genome sequence data.
Deelder Wouter et al. Scientific reports 2022 12 (1) 21150 -
Close-kin mark-recapture methods to estimate demographic parameters of mosquitoes.
Sharma Yogita et al. PLoS computational biology 2022 12 (12) e1010755
PATHOGENICITY / ANTIMICROBIAL RESISTANCE
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Genomic epidemiology of Escherichia coli: antimicrobial resistance through a One Health lens in sympatric humans, livestock and peri-domestic wildlife in Nairobi, Kenya.
Muloi Dishon M et al. BMC medicine 2022 12 (1) 471 -
Prevalence of Helicobacter pylori Virulence Genes and Their Association with Chronic Gastritis in Beijing, China.
Zhu Xiaoyan et al. Current microbiology 2022 12 (1) 33 -
Pangenomic analysis of Coxiella burnetii unveils new traits in genome architecture.
Abou Abdallah Rita et al. Frontiers in microbiology 2022 12 1022356 -
Machine learning models exploring characteristic single-nucleotide signatures in yellow fever virus.
Salgado Álvaro et al. PloS one 2022 12 (12) e0278982
DETECTION / DIAGNOSIS
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Rapid diagnosis of intra-amniotic infection using nanopore-based sequencing.
Piya Chaemsaithong et al. J Perinat Med 2022 12 (6) 769-774 -
Identification of Genetic Markers for the Detection of Bacillus thuringiensis Strains of Interest for Food Safety.
Fichant Arnaud et al. Foods (Basel, Switzerland) 2022 12 (23) -
Ligation-based assay for variant typing without sequencing: Application to SARS-CoV-2 variants of concern.
Nelson Dalton J et al. Influenza and other respiratory viruses 2022 12 -
Serological and Molecular Surveillance for SARS-CoV-2 Infection in Captive Tigers (Panthera tigris), Thailand.
Sangkachai Nareerat et al. Animals : an open access journal from MDPI 2022 12 (23) -
Determining Gaps in Publicly Shared SARS-CoV-2 Genomic Surveillance Data by Analysis of Global Submissions.
Ohlsen Elizabeth C et al. Emerging infectious diseases 2022 12 (13) S85-S92 -
One health system supporting surveillance during COVID-19 epidemic in Abruzzo region, southern Italy.
Di Lorenzo Alessio et al. One health (Amsterdam, Netherlands) 2022 12 100471 -
What is the prevalence of COVID-19 detection by PCR among deceased individuals in Lusaka, Zambia? A postmortem surveillance study
Gill CJ, et al. BMJ Open Dec 2022, 12 (12) e066763 -
Detection of Monkeypox Virus DNA in Airport Wastewater, Rome, Italy.
La Rosa Giuseppina et al. Emerging infectious diseases 2022 12 (1) -
Wide mismatches in the sequences of primers and probes for Monkeypox virus diagnostic assays.
Wu Fuqing et al. Journal of medical virology 2022 12 -
Fast surveillance response reveals the introduction of a new yellow fever virus sub-lineage in 2021, in Minas Gerais, Brazil.
Andrade Miguel Souza et al. Memorias do Instituto Oswaldo Cruz 2022 12 e220127
EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION
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Genomic analysis of methicillin-resistant Staphylococcus aureus clonal complex 239 isolated from Danish patients with and without an international travel history.
Coppens Jasmine et al. Frontiers in microbiology 2022 12 1016829 -
Whole genome sequencing reveals new links between spa t172/CC59 methicillin-resistant Staphylococcus aureus cases in low-endemicity region of Southwest Finland, 2007‒2016.
Silvola Jaakko et al. Scientific reports 2022 12 (1) 21326 -
Whole-genome sequencing surveillance and machine learning for healthcare outbreak detection and investigation: A systematic review and summary.
Sundermann Alexander J et al. Antimicrobial stewardship & healthcare epidemiology : ASHE 2022 12 (1) e91 -
Investigation of a vanA linezolid- and vancomycin-resistant Enterococcus faecium outbreak in the Southwest Indian Ocean (Reunion Island).
Kamus Laure et al. International journal of antimicrobial agents 2022 12 (5-6) 106686 -
Evaluating the potential of whole-genome sequencing for tracing transmission routes in experimental infections and natural outbreaks of bovine respiratory syncytial virus.
Johnson Paul C D et al. Veterinary research 2022 12 (1) 107 -
Monkeypox in Montréal: Epidemiology, Phylogenomics, and Public Health Response to a Large North American Outbreak.
Harrison Luke B et al. Annals of internal medicine 2022 12
ANTIMICROBIALS / VACCINES / INTERVENTIONS
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Investigating SARS-CoV-2 breakthrough infections per variant and vaccine type.
Dingemans Jozef et al. Frontiers in microbiology 2022 12 1027271
HOST-MICROBE INTERACTIONS
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NFKB2 haploinsufficiency identified via screening for IFNα2 autoantibodies in children and adolescents hospitalized with SARS-CoV-2-related complications.
Bodansky Aaron et al. The Journal of allergy and clinical immunology 2022 12 -
Alarming antibody evasion properties of rising SARS-CoV-2 BQ and XBB subvariants
Wang Q, et al. Cell, Dec 13, 2022. -
Molecular states during acute COVID-19 reveal distinct etiologies of long-term sequelae.
Thompson Ryan C et al. Nature medicine 2022 12
Disclaimer: Articles listed in the Advanced Molecular Detection Clips are selected by Public Health Genomics Branch to provide current awareness of the scientific literature and news. Inclusion in the clips does not necessarily represent the views of the Centers for Disease Control and Prevention nor does it imply endorsement of the article's methods or findings. CDC and DHHS assume no responsibility for the factual accuracy of the items presented. The selection, omission, or content of items does not imply any endorsement or other position taken by CDC or DHHS. Opinion, findings and conclusions expressed by the original authors of items included in the Clips, or persons quoted therein, are strictly their own and are in no way meant to represent the opinion or views of CDC or DHHS. References to publications, news sources, and non-CDC Websites are provided solely for informational purposes and do not imply endorsement by CDC or DHHS.
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