Advanced Molecular Detection Clips Content (Published on 12/13/2018)
NEWS
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Machine learning helps to hunt down the cause of a paralysing illness
Reardon S. Nature, Dec 6, 2018. -
The Recurring Dread of a Paralyzing Illness
Yong E. Atlantic, Dec 10, 2018. -
EV-D68 steps up its neurotropism.
Hofer Ursula et al. Nature reviews. Microbiology 2018 Dec (12) 718-719 -
ICU Stethoscopes Teeming With Bacteria
Walker M. MedPage Today, Dec 12, 2018. -
Nanopore Approach Shows Promise for Protein Detection
Bonislawski A. GenomeWeb, Dec 12, 2018. -
Transmissible Alzheimers theory gains traction
Abbott A. Nature, Dec 13, 2018. -
With a gift from the late Paul Allen, his philanthropy launches ambitious plan to probe human immunology
Robbins R. STAT, Dec 12, 2018.
CONCEPTS / COMMENTS
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Big data and black-box medical algorithms
Price WN. Sci Transl Med, Dec 12, 2018. -
All for one and one for all to fight flu
Nabel GJ, Shiver JW. Nature, Dec 10, 2018. -
Influenza Cataclysm, 1918
Morens DM, Taubenberger JK. New Engl J Med, Dec 13, 2018. -
Pig Movement and Antimicrobial Use Drive Transmission of Livestock-Associated Staphylococcus aureus CC398.
Smith Tara C et al. mBio 2018 Dec (6)
METHODS / TOOLS
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Using Core Genome Alignments To Assign Bacterial Species.
Chung Matthew et al. mSystems (6) -
ISU FLUture: a veterinary diagnostic laboratory web-based platform to monitor the temporal genetic patterns of Influenza A virus in swine.
Zeller Michael A et al. BMC bioinformatics 2018 Nov (1) 397 -
Going the Distance: Optimizing RNA-Seq Strategies for Transcriptomic Analysis of Complex Viral Genomes.
Depledge Daniel P et al. Journal of virology 2019 Jan (1) -
Low-Bias RNA Sequencing of the HIV-2 Genome from Blood Plasma.
James Katherine L et al. Journal of virology 2019 Jan (1) -
Virus genotyping by massive parallel amplicon sequencing: adenovirus and enterovirus in the Norwegian MIDIA study.
Cinek Ondrej et al. Journal of medical virology 2018 Dec
EVOLUTION / ECOLOGY / POPULATIONS
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Draft Genome Sequences of Nine Vibrio sp. Isolates from across the United States Closely Related to Vibrio cholerae.
Islam Mohammad Tarequl et al. Microbiology resource announcements 2018 Nov (21)
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Complete Genome Sequence of Streptacidiphilus sp. Strain 15-057A, Obtained from Bronchial Lavage Fluid.
Arthur Robert A et al. Microbiology resource announcements 2018 Nov (19)
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Draft Genome Sequences for a Diverse Set of Seven Haemophilus and Aggregatibacter Species.
Nichols Megan et al. Microbiology resource announcements 2018 Oct (16)
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Complete Genome Sequences of Monongahela Hantavirus from Pennsylvania, USA.
Albariño César G et al. Microbiology resource announcements 2018 Sep (11)
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Origin and evolution of pathogenic coronaviruses.
Cui Jie et al. Nature reviews. Microbiology 2018 Dec -
Sequence Analysis of the Fusion Protein Gene of Human Respiratory Syncytial Virus Circulating in China from 2003 to 2014.
Song Jinhua et al. Scientific reports 2018 Dec (1) 17618 -
Oropouche orthobunyavirus: Genetic characterization of full-length genomes and development of molecular methods to discriminate natural reassortments.
Nunes Márcio Roberto Teixeira et al. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2018 Nov 16-22 -
Characterization of the Genome Sequences of Enterovirus C109 from Two Respiratory Disease Cases in Florida, 2016.
Ng Terry Fei Fan et al. Microbiology resource announcements 2018 Jul (3)
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Maintenance and reappearance of extremely divergent intra-host HIV-1 variants.
Wertheim Joel O et al. Virus evolution 2018 Jul (2) vey030
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International Space Station conditions alter genomics, proteomics, and metabolomics in Aspergillus nidulans.
Romsdahl Jillian et al. Applied microbiology and biotechnology 2018 Dec -
The Amblyomma maculatum Koch, 1844 (Acari: Ixodidae) group of ticks: phenotypic plasticity or incipient speciation?
Lado Paula et al. Parasites & vectors 2018 Nov (1) 610
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Evidence that RNA Viruses Drove Adaptive Introgression between Neanderthals and Modern Humans.
Enard David et al. Cell 2018 Oct (2) 360-371.e13
PATHOGENICITY / ANTIMICROBIAL RESISTANCE
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The phylogeography and incidence of multi-drug resistant typhoid fever in sub-Saharan Africa.
Park Se Eun et al. Nature communications 2018 Nov (1) 5094
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Diverse vectors and mechanisms spread NDM beta-lactamases among carbapenem resistant Enterobacteriaceae in the Greater Boston area.
Pecora Nicole et al. Antimicrobial agents and chemotherapy 2018 Dec -
Travel to Asia is a strong predictor for carriage of cephalosporin resistant E. coli and Klebsiella spp. but does not explain everything; prevalence study at a Norwegian hospital 2014-2016.
Espenhain Laura et al. Antimicrobial resistance and infection control 2018 146
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Drivers and Dynamics of Methicillin-Resistant Livestock-Associated Staphylococcus aureus CC398 in Pigs and Humans in Denmark.
Sieber Raphael N et al. mBio 2018 Nov (6) -
Drug-resistance profiling and transmission dynamics of multidrug-resistant Mycobacterium tuberculosis in Saudi Arabia revealed by whole genome sequencing.
Al-Ghafli Hawra et al. Infection and drug resistance 2018 2219-2229 -
Differentiation between persistent infection/colonization and re-infection/re-colonization of Mycobacterium abscessus isolated from patients in Northeast Thailand.
Kham-Ngam Irin et al. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2018 Dec 35-42 -
Virus-inclusive single-cell RNA sequencing reveals the molecular signature of progression to severe dengue.
Zanini Fabio et al. Proceedings of the National Academy of Sciences of the United States of America 2018 Dec -
Surveillance of enteroviruses from paediatric patients attended at a tertiary hospital in Catalonia from 2014 to 2017.
Andrés Cristina et al. Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology 2018 Nov 29-35 -
Determining the origins of HIV-1 drug-resistant minority variants in people who are recently infected using phylogenetic reconstruction.
Mbisa Jean L et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2018 Dec
DETECTION / DIAGNOSIS
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Molecular analysis of bacterial contamination on stethoscopes in an intensive care unit
Knecht VR, et al. Infect Control Hosp Epidemiol, Dec 12, 2018. -
Integrating host response and unbiased microbe detection for lower respiratory tract infection diagnosis in critically ill adults.
Langelier Charles et al. Proceedings of the National Academy of Sciences of the United States of America 2018 Nov -
Which methods are appropriate for the detection of Staphylococcus argenteus and is it worthwhile to distinguish S. argenteus from S. aureus ?
Kaden René et al. Infection and drug resistance 2018 2335-2344 -
Profiling mycobacterial communities in pulmonary nontuberculous mycobacterial disease.
Cowman Steven A et al. PloS one 2018 (12) e0208018 -
A point-of-care diagnostic for differentiating Ebola from endemic febrile diseases
Sebba D, et al. Sci Transl Med, Dec 12, 2018. -
Metagenomic virome sequencing in living donor-recipient kidney transplant pairs revealed JC Polyomavirus transmission.
Schreiber Peter W et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2018 Dec -
Evaluating the accuracy and sensitivity of detecting minority HIV-1 populations by Illumina next-generation sequencing.
Kireev D E et al. Journal of virological methods 2018 11 40-45 -
Rapid whole-genome based typing and surveillance of avipoxviruses using nanopore sequencing.
Croville Guillaume et al. Journal of virological methods 2018 11 34-39 -
Combination of PURE-DNA extraction and LAMP-DNA amplification methods for accurate malaria diagnosis on dried blood spots.
Vincent Jeanne Perpétue et al. Malaria journal 2018 Oct (1) 373
EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION
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Characterization of a multidrug-resistant Klebsiella pneumoniae ST607-K25 clone responsible for a nosocomial outbreak in a neonatal intensive care unit.
Peltier F et al. Journal of medical microbiology 2018 Dec -
Whole Genome Sequencing detects Inter-Facility Transmission of Carbapenem-resistant Klebsiella pneumoniae.
Spencer Melanie D et al. The Journal of infection 2018 Nov -
Prospective investigation of carbapenem-resistant Klebsiella pneumonia transmission among the staff, environment, and patients in five major intensive care units, Beijing.
Yan Zhongqiang et al. The Journal of hospital infection 2018 Dec -
The fifth influenza A(H7N9) epidemic: A family cluster of infection in Suzhou city of China, 2016.
Wang Jiajia et al. International journal of infectious diseases : IJID : official publication of the International Society for Infectious Diseases 2018 Sep 128-135 -
An outbreak of hepatitis E virus infection caused by genotype 1 in an urban setting in eastern India: a probe into risk factors for transmission.
Dwibedi Bhagirathi et al. Virusdisease 2018 Dec (4) 544-547 -
Transmission dynamics of re-emerging rabies in domestic dogs of rural China.
Tian Huaiyu et al. PLoS pathogens 2018 Dec (12) e1007392
HOST-MICROBE INTERACTIONS
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Metabolic Crosstalk Between Host and Parasitic Pathogens.
Moreira Diana et al. Experientia supplementum (2012) 2018 421-458 -
Metabolite changes in blood predict the onset of tuberculosis.
Weiner January et al. Nature communications 2018 12 (1) 5208 -
The oral microbiota: dynamic communities and host interactions.
Lamont Richard J et al. Nature reviews. Microbiology 2018 Dec (12) 745-759 -
The Lewis A phenotype is a restriction factor for Rotateq and Rotarix vaccine-take in Nicaraguan children.
Bucardo Filemón et al. Scientific reports 2018 01 (1) 1502
indicates that at least one CDC-affiliated author; indicates that the article addresses aspects of implementation or evaluation in clinical or public health practice. Disclaimer: Articles listed in the Advanced Molecular Detection Clips are selected by Public Health Genomics Branch to provide current awareness of the scientific literature and news. Inclusion in the clips does not necessarily represent the views of the Centers for Disease Control and Prevention nor does it imply endorsement of the article's methods or findings. CDC and DHHS assume no responsibility for the factual accuracy of the items presented. The selection, omission, or content of items does not imply any endorsement or other position taken by CDC or DHHS. Opinion, findings and conclusions expressed by the original authors of items included in the Clips, or persons quoted therein, are strictly their own and are in no way meant to represent the opinion or views of CDC or DHHS. References to publications, news sources, and non-CDC Websites are provided solely for informational purposes and do not imply endorsement by CDC or DHHS.
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