Advanced Molecular Detection Clips Content (Published on 12/07/2017)
NEWS
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Scientists just added two functional letters to the genetic code
Guglielmi G. Science, Nov 29, 2017. -
Human SARS Virus Found Piecemeal in Different Bat Coronaviruses From One Cave
GenomeWeb, Nov 30, 2017. -
Dengue Vaccine Program Halted Over Safety Issues
Williams S. The Scientist, Dec 5, 2017. -
Genetic mutation in FluMist could be altered to restore effectiveness
Healio, Dec 3, 2017. -
Mosquito Genomes Reveal High Diversity, Movement of Insecticide Resistance Genes
GenomeWeb, Nov 29, 2017. -
Metagenomic Sequencing Finds Flies May Transport Pathogenic Bacteria
Heger M. GenomeWeb, Nov 30, 2017. -
Space Station Microbes Similar to Those Found in Houses
GenomeWeb, Dec 5, 2017.
POLICY
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The World Health Organization's Response to Emerging Human Immunodeficiency Virus Drug Resistance and a Call for Global Action.
Bertagnolio Silvia et al. The Journal of infectious diseases 2017 Dec (suppl_9) S801-S804
CONCEPTS / COMMENTS
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A test drive of a DNA-analysis toolkit in the cloud
Gibbs WW. Nature, Dec 5, 2017. -
Whos afraid of the big bad pathogen?
Christenson SA. Science Transl Med, Dec 6, 2017. -
Pathogen genomics: Genomics in the time of cholera.
Perdigoto Carolina et al. Nature reviews. Genetics 2017 Dec -
Internet-based biosurveillance methods for vector-borne diseases: Are they novel public health tools or just novelties?
Pollett Simon et al. PLoS neglected tropical diseases 2017 Nov (11) e0005871 -
Second International Conference on Crimean-Congo Hemorrhagic Fever.
Spengler Jessica R et al. Antiviral research 2017 Nov
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Principles for gene drive research.
Emerson Claudia et al. Science (New York, N.Y.) 2017 12 (6367) 1135-1136 -
CRISPR-Cas9 technology: applications in genome engineering, development of sequence-specific antimicrobials, and future prospects.
de la Fuente-Núñez César et al. Integrative biology : quantitative biosciences from nano to macro 2017 Feb (2) 109-122
METHODS / TOOLS
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bioBakery: A meta'omic analysis environment.
McIver Lauren J et al. Bioinformatics (Oxford, England) 2017 Nov -
PHYLOSCANNER: Inferring Transmission from Within- and Between-Host Pathogen Genetic Diversity.
Wymant Chris et al. Molecular biology and evolution 2017 Nov -
Learning infectious disease epidemiology in a modern framework.
Handel Andreas et al. PLoS computational biology 2017 10 (10) e1005642 -
Experimental design and quantitative analysis of microbial community multiomics.
Mallick Himel et al. Genome biology 2017 Nov (1) 228 -
AureoWiki ̵ The repository of the Staphylococcus aureus research and annotation community.
Fuchs Stephan et al. International journal of medical microbiology : IJMM 2017 Nov -
Identifying spatio-temporal dynamics of Ebola in Sierra Leone using virus genomes.
Gustafson Kyle B et al. Journal of the Royal Society, Interface 2017 Nov (136) -
Simple protocol for population (Sanger) sequencing for Zika virus genomic regions.
Cabral Gabriela Bastos et al. Memorias do Instituto Oswaldo Cruz 2017 Nov 0 -
Alternative Sample Types for HIV-1 Antiretroviral Drug Resistance Testing.
Singh Dolly et al. The Journal of infectious diseases 2017 Dec (suppl_9) S834-S837 -
ZikaBase: An integrated ZIKV- Human Interactome Map database.
Gurumayum Sanathoi et al. Virology 2017 Nov 203-210 -
Tagging to endogenous genes of Plasmodium falciparum using CRISPR/Cas9.
Kuang Dexuan et al. Parasites & vectors 2017 Dec (1) 595 -
Functional sequencing read annotation for high precision microbiome analysis.
Zhu Chengsheng et al. Nucleic acids research 2017 Nov -
Moving beyond microbiome-wide associations to causal microbe identification.
Surana Neeraj K et al. Nature 2017 Dec
EVOLUTION / ECOLOGY / POPULATIONS
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Phenotypic and genotypic comparison of salmonellae from diarrhoeic and healthy humans and cattle, Nigeria.
Fashae K et al. Zoonoses and public health 2017 Nov -
Genetic signatures for Helicobacter pylori strains of West African origin.
Bullock Kennady K et al. PloS one 2017 (11) e0188804 -
Population structure of Escherichia coli O26 : H11 with recent and repeated stx2 acquisition in multiple lineages.
Ogura Yoshitoshi et al. Microbial genomics 2017 Nov (11) -
Characterisation of a rare, reassortant human G10P[14] rotavirus strain detected in Honduras.
Quaye Osbourne et al. Memorias do Instituto Oswaldo Cruz 2018 Jan (1) 9-16
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The global spread of Middle East respiratory syndrome: an analysis fusing traditional epidemiological tracing and molecular phylodynamics.
Min Jae et al. Global health research and policy 2016 14 -
Discovery of a rich gene pool of bat SARS-related coronaviruses provides new insights into the origin of SARS coronavirus.
Hu Ben et al. PLoS pathogens 2017 Nov (11) e1006698 -
Molecular characterization of a human G20P[28] rotavirus a strain with multiple genes related to bat rotaviruses.
Esona Mathew D et al. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2017 Nov 166-170
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Molecular characterization of Cryptococcus neoformans and Cryptococcus gattii from environmental sources and genetic comparison with clinical isolates in Apulia, Italy.
Montagna Maria Teresa et al. Environmental research 2018 Jan 347-352
PATHOGENICITY / ANTIMICROBIAL RESISTANCE
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Molecular characterisation of human Shiga toxin-producing Escherichia coli O26 strains: results of an outbreak investigation, Romania, February to August 2016.
Usein Codruta-Romanita et al. Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin 2017 Nov (47) -
Genome Comparison of Erythromycin Resistant Campylobacter from Turkeys Identifies Hosts and Pathways for Horizontal Spread of erm(B) Genes.
Florez-Cuadrado Diego et al. Frontiers in microbiology 2017 2240 -
Emergence and spread of epidemic multidrug-resistant Pseudomonas aeruginosa.
Miyoshi-Akiyama Tohru et al. Genome biology and evolution 2017 Nov -
After the deluge: mining Staphylococcus aureus genomic data for clinical associations and host-pathogen interactions.
Copin Richard et al. Current opinion in microbiology 2017 Nov 43-50 -
Early transmissible ampicillin resistance in zoonotic Salmonella enterica serotype Typhimurium in the late 1950s: a retrospective, whole-genome sequencing study.
Tran-Dien Alicia et al. The Lancet. Infectious diseases 2017 Nov -
Inter-species population dynamics enhance microbial horizontal gene transfer and spread of antibiotic resistance.
Cooper Robert M et al. eLife 2017 Nov -
Parallel reaction monitoring of clinical Mycobacterium tuberculosis lineages reveals pre-existent markers of rifampicin tolerance in the emerging Beijing lineage.
de Keijzer Jeroen et al. Journal of proteomics 2017 Jan 9-17 -
Comparative Genomic Analysis of Two Clonally Related Multidrug Resistant Mycobacterium tuberculosis by Single Molecule Real Time Sequencing.
Leung Kenneth Siu-Sing et al. Frontiers in cellular and infection microbiology 2017 478 -
Secretomes of Mycoplasma hyopneumoniae and Mycoplasma flocculare reveal differences associated to pathogenesis.
Paes Jéssica A et al. Journal of proteomics 2017 Feb 69-77
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The Role of HIV-1 Drug-Resistant Minority Variants in Treatment Failure.
Stella-Ascariz Natalia et al. The Journal of infectious diseases 2017 Dec (suppl_9) S847-S850 -
Human Immunodeficiency Virus Type 1 Drug Resistance Mutations Update.
Shafer Robert W et al. The Journal of infectious diseases 2017 Dec (suppl_9) S843-S846 -
malERA: An updated research agenda for insecticide and drug resistance in malaria elimination and eradication.
et al. PLoS medicine 2017 Nov (11) e1002450
DETECTION / DIAGNOSIS
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Meningococcal carriage among a university student population - United States, 2015.
Breakwell Lucy et al. Vaccine 2017 Nov
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Whole-genome sequencing of bloodstream Staphylococcus aureus isolates does not distinguish bacteraemia from endocarditis.
Lilje Berit et al. Microbial genomics 2017 Nov (11) -
Current Status of Point-of-Care Testing for Human Immunodeficiency Virus Drug Resistance.
Duarte Horacio A et al. The Journal of infectious diseases 2017 Dec (suppl_9) S824-S828 -
Severe Respiratory Illness Associated with Rhinovirus during the EV-D68 Outbreak in the United States, August - November, 2014.
Prill Mila M et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2017 Nov
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Merging FT-IR and NGS for simultaneous phenotypic and genotypic identification of pathogenic Candida species.
Colabella Claudia et al. PloS one 2017 (12) e0188104 -
Country-Wide Surveillance of Molecular Markers of Antimalarial Drug Resistance in Senegal by Use of Positive Malaria Rapid Diagnostic Tests.
Ndiaye Magatte et al. The American journal of tropical medicine and hygiene 2017 Nov (5) 1593-1596 -
Human Intestinal Parasite Burden and Poor Sanitation in Rural Alabama.
McKenna Megan L et al. The American journal of tropical medicine and hygiene 2017 Nov (5) 1623-1628
EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION
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Genomic Investigation of a Putative Endoscope-Associated Carbapenem-Resistant Enterobacter cloacae Outbreak Reveals a Wide Diversity of Circulating Strains and Resistance Mutations
Hawken SE, et al. Clin Infect Did, Oct 26, 2017. -
Suspected cases of intracontinental Burkholderia pseudomallei sequence type homoplasy resolved using whole-genome sequencing.
Aziz Ammar et al. Microbial genomics 2017 Nov (11) -
Risk Factors Associated with Blood Exposure for Sporadic Hepatitis E in Dhaka, Bangladesh.
Sazzad Hossain M S et al. The American journal of tropical medicine and hygiene 2017 Nov (5) 1437-1444
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HIV-1 and Hepatitis C virus selection bottleneck in Chinese people who inject drugs.
Li Fan et al. AIDS (London, England) 2017 Nov -
Hepatitis A virus infections and outbreaks in asylum seekers arriving to Germany, September 2015 to March 2016.
Michaelis Kai et al. Emerging microbes & infections 2017 Apr (4) e26
ANTIMICROBIALS / VACCINES / INTERVENTIONS
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The Search for 'Evolution-Proof' Antibiotics.
Bell Graham et al. Trends in microbiology 2017 Nov -
Role of rotavirus vaccination on an emerging G8P[8] rotavirus strain causing an outbreak in central Japan.
Hoque Sheikh Ariful et al. Vaccine 2017 Nov
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Next-Generation Human Immunodeficiency Virus Sequencing for Patient Management and Drug Resistance Surveillance.
Noguera-Julian Marc et al. The Journal of infectious diseases 2017 Dec (suppl_9) S829-S833
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malERA: An updated research agenda for malaria elimination and eradication.
Rabinovich Regina N et al. PLoS medicine 2017 Nov (11) e1002456
HOST-MICROBE INTERACTIONS
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Individual-specific edge-network analysis for disease prediction.
Yu Xiangtian et al. Nucleic acids research 2017 Nov (20) e170 -
Global Transcriptome Analysis of Aedes aegypti Mosquitoes in Response to Zika Virus Infection.
Etebari Kayvan et al. mSphere (6)
indicates that at least one CDC-affiliated author; indicates that the article addresses aspects of implementation or evaluation in clinical or public health practice. Disclaimer: Articles listed in the Advanced Molecular Detection Clips are selected by the CDC Office of Genomics and Precision Public Health to provide current awareness of the scientific literature and news. Inclusion in the clips does not necessarily represent the views of the Centers for Disease Control and Prevention nor does it imply endorsement of the article's methods or findings. CDC and DHHS assume no responsibility for the factual accuracy of the items presented. The selection, omission, or content of items does not imply any endorsement or other position taken by CDC or DHHS. Opinion, findings and conclusions expressed by the original authors of items included in the Clips, or persons quoted therein, are strictly their own and are in no way meant to represent the opinion or views of CDC or DHHS. References to publications, news sources, and non-CDC Websites are provided solely for informational purposes and do not imply endorsement by CDC or DHHS.
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