Advanced Molecular Detection Clips Content (Published on 12/05/2024)
NEWS
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International Pathogen Surveillance Network Awards $2M in First Round of Grants
GenomeWeb, Nov 27, 2024. -
Have Foodborne Illness Outbreaks Really Increased? — The answer may have more to do with how we track them, experts say
Putka S. MedPage Today, Nov 25, 2024. -
Sick animals suggest COVID pandemic started in Wuhan market
Mallapaty S. Nature, Dec 4, 2024. -
Canadian probe into teen's critical H5N1 infection finds no clear source
Schnirring L. CIDRAP, Nov 26, 2024. -
Single mutation in H5N1 bird flu virus may make it more infectious to humans, study finds
Branswell H. STAT, Dec 5, 2024. -
Optimized Influenza Sequencing Method Could Improve H5N1 Outbreak Response
Butkus B. GenomeWeb, Nov 26, 2024. -
This malaria vaccine is delivered by a mosquito bite
Kudiabor H. Nature, Nov 20, 2024. -
The brain microbiome: could understanding it help prevent dementia?
Fleming A. Guardian, Dec 1, 2024. -
ChatGPT turns two: how the AI chatbot has changed scientists’ lives
Lenharo M. Nature, Dec 2, 2024.
CONCEPTS / COMMENTS
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Clinical Informatics Foundations of 57 Years Sentinel and Genomic Surveillance: Data Quality, Linkage and Access.
Simon de Lusignan et al. Stud Health Technol Inform 2024 11 129-133 -
Historical plague pandemics: perspectives from ancient DNA.
Emily Gaul et al. Trends Microbiol 2024 11 -
Genomic Surveillance of SARS-CoV-2 in Taiwan: A Perspective on Evolutionary Data Interpretation and Sequencing Issues.
Yu-Nong Gong et al. Biomed J 2024 11 100820 -
A call to innovate Antarctic avian influenza surveillance.
Michelle Wille et al. Trends Ecol Evol 2024 11 -
Oropouche Virus: A Rising Threat in the Western Hemisphere.
Kevin O'Laughlin et al. Ann Intern Med 2024 11
METHODS / TOOLS
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AltaiR: a C toolkit for alignment-free and temporal analysis of multi-FASTA data.
Jorge M Silva et al. Gigascience 2024 11 -
Spread.gl: visualising pathogen dispersal in a high-performance browser application.
Yimin Li et al. Bioinformatics 2024 12 -
Comparison of three source attribution methods applied to whole genome sequencing data of monophasic and biphasic Salmonella Typhimurium isolates from the British Isles and Denmark.
Jaromir Guzinski et al. Front Microbiol 2024 11 1393824 -
Automation for lateral flow rapid tests: Protocol for an open-source fluid handler and applications to dengue and African swine fever tests.
Rohan Laurent et al. PLOS Glob Public Health 2024 11 (11) e0002625 -
Amplification of Filovirus Genomes from Clinical Samples for Next Generation Sequencing.
Stephanie N Seifert et al. Methods Mol Biol 2024 11 431-437 -
MalKinID: A Classification Model for Identifying Malaria Parasite Genealogical Relationships Using Identity-by-Descent.
Wesley Wong et al. Genetics 2024 11
EVOLUTION / ECOLOGY / POPULATIONS
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Two fitness inference schemes compared using allele frequencies from 1068 391 sequences sampled in the UK during the COVID-19 pandemic.
Hong-Li Zeng et al. Phys Biol 2024 11 (1) -
Dimensionality reduction distills complex evolutionary relationships in seasonal influenza and SARS-CoV-2.
Sravani Nanduri et al. Virus Evol 2024 11 (1) veae087 -
Origin and evolution of West Nile virus lineage 1 in Italy.
Andrea Silverj et al. Epidemiol Infect 2024 12 e150 -
Reassortment of newly emergent clade 2.3.4.4b A(H5N1) highly pathogenic avian influenza A viruses in Bangladesh.
Subrata Barman et al. Emerg Microbes Infect 2024 11 2432351 -
Analysis of Powassan Virus Genome Sequences from Human Cases Reveals Substantial Genetic Diversity with Implications for Molecular Assay Development.
Erik H Klontz et al. Viruses 2024 11 (11) -
Examining the molecular clock hypothesis for the contemporary evolution of the rabies virus.
Rowan Durrant et al. PLoS Pathog 2024 11 (11) e1012740 -
Phylogeny of Seven Genomes of Monkeypox Virus - Anhui Province, China, 2023.
Wanhang Lu et al. China CDC Wkly 2024 11 (46) 1218-1222 -
Population genomics of Plasmodium ovale species in sub-Saharan Africa.
Kelly Carey-Ewend et al. Nat Commun 2024 11 (1) 10297 -
Estimation of PfRh5-based vaccine efficacy in asymptomatic Plasmodium falciparum patients from high-endemic areas of Tanzania using genetic and antigenicity variation screening.
Hojong Jun et al. Front Immunol 2024 12 1495513
PATHOGENICITY / ANTIMICROBIAL RESISTANCE
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Characterization of carbapenem-resistant Enterobacterales and Pseudomonas aeruginosa carrying multiple carbapenemase genes-Antimicrobial Resistance Laboratory Network, 2018-2022.
Sarah Sabour et al. J Clin Microbiol 2024 11 e0122024 -
The dissemination of multidrug-resistant and hypervirulent Klebsiella pneumoniae clones across the Kingdom of Saudi Arabia.
Jiayi Huang et al. Emerg Microbes Infect 2024 11 (1) 2427793 -
Emergence of Escherichia coli ST131 carrying carbapenemase genes, European Union/European Economic Area, August 2012 to May 2024.
Anke Kohlenberg et al. Euro Surveill 2024 11 (47) -
First insights into the prevalence, genetic characteristics, and pathogenicity of Bacillus cereus from generations worldwide.
Cuihong Tong et al. mSphere 2024 10 (11) e0070224 -
Global genomic epidemiology of bla carbapenemase-associated integrons.
William Matlock et al. Microb Genom 2024 12 (12) -
A single mutation in bovine influenza H5N1 hemagglutinin switches specificity to human receptors
Lin TH, et al. Science, Dec 5, 2024.
DETECTION / DIAGNOSIS
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Surveillance of Mycobacterium tuberculosis drug resistance and epidemiology in Southwest China, a China CDC pilot study.
Chunfa Liu et al. Clin Microbiol Infect 2024 11 -
Genomic surveillance of multidrug-resistant organisms based on long-read sequencing.
Fabian Landman et al. Genome Med 2024 11 (1) 137 -
Comparing microbiological and molecular diagnostic tools for the surveillance of anthrax.
Sunday Ochonu Ochai et al. PLoS Negl Trop Dis 2024 11 (11) e0012122 -
Comprehensive pathogen identification and antimicrobial resistance prediction from positive blood cultures using nanopore sequencing technology.
Po-Yu Liu et al. Genome Med 2024 12 (1) 141 -
Salmonella sp. Tied to Multistate Outbreak Isolated from Wastewater, United States, 2022.
Zoe S Goldblum et al. Emerg Infect Dis 2024 11 (12) 2695-2697 -
Rapid inference of antibiotic susceptibility phenotype of uropathogens using metagenomic sequencing with neighbor typing.
Amanda C Carroll et al. Microbiol Spectr 2024 11 e0136624 -
Surveillance of Emerging Rodent-Borne Pathogens in Wastewater in Taiwan: A One Health Approach.
Kun-Hsien Tsai et al. Trop Med Infect Dis 2024 11 (11) -
Molecular detection of dengue virus from febrile patients in Ghana.
Joseph Humphrey Kofi Bonney et al. BMC Infect Dis 2024 12 (1) 1382 -
Development of a multiplex droplet digital PCR method for detection and differentiation of mpox virus clades.
Xiaoyue Chu et al. J Virol Methods 2024 11 115078 -
Evaluating the Effectiveness of External Molecular Proficiency Testing in the Global Polio Laboratory Network, 2021-2022.
Nancy Gerloff et al. Pathogens 2024 11 (11) -
Optimization of pan-lyssavirus LN34 assay for streamlined rabies diagnostics by real-time RT-PCR.
Crystal M Gigante et al. J Virol Methods 2024 11 115070 -
A label-free optical biosensor-based point-of-care test for the rapid detection of Monkeypox virus.
Mete Aslan et al. Biosens Bioelectron 2024 11 116932 -
Surveillance and agnostic capture sequencing of samples from individuals with rash-associated illness in Mali indicates regional transmission of measles virus from West and Central Africa.
Fousseyni Kané et al. Infect Genet Evol 2024 11 105691 -
Plasmodium falciparum molecular surveillance to inform the Mozambican National Malaria Control Programme strategy: protocol.
Clemente da Silva et al. BMJ Open 2024 11 (11) e092590 -
High-throughput genotyping of Plasmodium vivax in the Peruvian Amazon via molecular inversion probes.
Zachary R Popkin-Hall et al. Nat Commun 2024 11 (1) 10219
EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION
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Transmission of Group A Streptococcus in Long-Term Care: An Outbreak Investigation.
Theresa Murillo et al. Am J Infect Control 2024 11 -
A Bi-national Sample-Initiated Retrospective Outbreak Investigation of Listeria monocytogenes Infections in the United States and Canada Linked to Enoki Mushrooms Imported from China 2022-2023.
Margaret Kirchner et al. J Food Prot 2024 11 100413 -
Homelessness and Organ Donor-Derived Bartonella quintana Infection.
Rachel Henderson et al. Emerg Infect Dis 2024 11 (12) 2459-2466 -
Canine Multidrug-Resistant Pseudomonas aeruginosa Cases Linked to Human Artificial Tears-Related Outbreak.
Emma R Price et al. Emerg Infect Dis 2024 11 (12) 2689-2691 -
Signatures of transmission in within-host Mycobacterium tuberculosis complex variation: a retrospective genomic epidemiology study.
Katharine S Walter et al. Lancet Microbe 2024 11 100936 -
Successful management of a multi-species outbreak of carbapenem-resistant organisms in Fiji: a prospective genomics-enhanced investigation and response.
Tracey Young-Sharma et al. Lancet Reg Health West Pac 2024 12 101234 -
Genomic tools for post-elimination measles molecular epidemiology using Canadian surveillance data from 2018-2020.
Joanne Hiebert et al. Front Microbiol 2024 12 1475144 -
Molecular epidemiology of continued Plasmodium falciparum disease transmission after an outbreak in Ecuador.
Shazia Ruybal-Pesántez et al. Front Trop Dis 2024 11
HOST-MICROBE INTERACTIONS
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CD8 T cell epitope conservation in emerging H5N1 viruses suggests global protection.
Emma J Grant et al. Clin Transl Immunology 2024 11 (11) e70017 -
Reconstructed influenza A/H3N2 infection histories reveal variation in incidence and antibody dynamics over the life course.
James A Hay et al. PLoS Biol 2024 11 (11) e3002864 -
Analysis of Complement Factor H gene polymorphisms and their association with clinical manifestations ofleptospirosis.
Lazara Elena Santiesteban-Lores et al. Immunogenetics 2024 11 (1) 4
Disclaimer: Articles listed in the Advanced Molecular Detection Clips are selected by Public Health Genomics Branch to provide current awareness of the scientific literature and news. Inclusion in the clips does not necessarily represent the views of the Centers for Disease Control and Prevention nor does it imply endorsement of the article's methods or findings. CDC and DHHS assume no responsibility for the factual accuracy of the items presented. The selection, omission, or content of items does not imply any endorsement or other position taken by CDC or DHHS. Opinion, findings and conclusions expressed by the original authors of items included in the Clips, or persons quoted therein, are strictly their own and are in no way meant to represent the opinion or views of CDC or DHHS. References to publications, news sources, and non-CDC Websites are provided solely for informational purposes and do not imply endorsement by CDC or DHHS.
- Page last reviewed:Feb 1, 2024
- Page last updated:Jan 9, 2025