Advanced Molecular Detection Clips Content (Published on 11/21/2024)
NEWS
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'Evo' AI Tool Trained to Model, Design Prokaryotic Genomes
GenomeWeb, Nov 15, 2024. -
Novel genomic test shows promise to streamline diagnosis of multiple infectious diseases
Soucheray S. CIDRAP, Nov 20, 2024. -
Canadian teen’s bird flu infection is not the version found in cows
Branswell H. STAT, Nov 13, 2024. -
The World Is Watching the U.S. Deal With Bird Flu, and It’s Scary
de Oliveira T. New York Times, Nov 19, 2024. -
Bird flu in Canada may have mutated to become more transmissible to humans
Schreiber M. Guardian, Nov 19, 2024. -
Poland detects polio in Warsaw wastewater sample
Schnirring L. CIDRAP, Nov 20, 2024.
EVENTS / TRAINING / WEB RESOURCES
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Potential Research Priorities to Inform US Readiness and Response to Avian Influenza A H5N1
(workshop proceedings in brief) NASEM, Nov 2024.
CONCEPTS / COMMENTS
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A consensus statement on dual purpose pathogen surveillance systems: The always on approach.
Helene-Mari van der Westhuizen et al. PLOS Glob Public Health 2024 11 (11) e0003762
METHODS / TOOLS
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ViralPrimer: a web server to monitor viral nucleic acid amplification tests' primer efficiency during pandemics, with emphasis on SARS-CoV-2 and Mpox.
Norbert Deutsch et al. Bioinformatics 2024 11 (11) -
Enriching the future of public health microbiology with hybridization bait capture.
Megan S Beaudry et al. Clin Microbiol Rev 2024 11 e0006822
EVOLUTION / ECOLOGY / POPULATIONS
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Multiple Brucella melitensis lineages are driving the human brucellosis epidemic in Shaanxi Province, China: evidence from whole genome sequencing-based analysis.
Cuihong An et al. Front Cell Infect Microbiol 2024 11 1452143 -
Distribution of Clostridioides difficile ribotypes and sequence types across humans, animals and food in thirteen European countries.
Rupnik Maja et al. Emerg Microbes Infect 2024 11 2427804 -
Severe acute respiratory syndrome coronavirus 2 variants in patients with coronavirus disease 2019 and environmental sampling from the hospital and market during the coronavirus disease 2019 pandemic in Thailand.
Uraporn Phumisantiphong et al. Diagn Microbiol Infect Dis 2024 11 (2) 116604 -
Dengue virus genomic surveillance in the applying Wolbachia to eliminate dengue trial reveals genotypic efficacy and disruption of focal transmission.
Kathryn Edenborough et al. Sci Rep 2024 11 (1) 28004 -
Global and regional genetic diversity of HIV-1 in 2010-21: systematic review and analysis of prevalence.
Malavika Nair et al. Lancet Microbe 2024 9 (11) 100912 -
Retrospective epidemiologic and genomic surveillance of arboviruses in 2023 in Brazil reveals high co-circulation of chikungunya and dengue viruses.
Augusto César Parreiras de Jesus et al. BMC Med 2024 11 (1) 546 -
Evolutionary analysis of Hemagglutinin and neuraminidase gene variation in H1N1 swine influenza virus from vaccine intervention in China.
Xinkun Zhao et al. Sci Rep 2024 11 (1) 28792 -
Expansion of Oropouche virus in non-endemic Brazilian regions: analysis of genomic characterisation and ecological drivers.
Tiago Gräf et al. Lancet Infect Dis 2024 11 -
The Emergence of Cat-Transmitted Sporotrichosis Driven by Sporothrix brasiliensis in Piauí, Brazil.
Raizza Eveline Escórcio Pinheiro et al. Zoonoses Public Health 2024 11 -
Modelling transmission dynamics and genomic diversity in a recombining parasite population.
Dominic Kwiatkowski et al. Wellcome Open Res 2024 11 215
PATHOGENICITY / ANTIMICROBIAL RESISTANCE
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Neural network-based predictions of antimicrobial resistance phenotypes in multidrug-resistant Acinetobacter baumannii from whole genome sequencing and gene expression.
Huiqiong Jia et al. Antimicrob Agents Chemother 2024 11 e0144624 -
The catalogue of Mycobacterium tuberculosis mutations associated with drug resistance to 12 drugs in China from a nationwide survey: a genomic analysis.
Shaojun Pei et al. Lancet Microbe 2024 10 (11) 100899 -
Strain-level genomic analysis of serotype, genotype and virulence gene composition of group B streptococcus.
Zhen Zeng et al. Front Cell Infect Microbiol 2024 11 1396762 -
Genomic epidemiology and phenotypic characterisation of Salmonella enterica serovar Panama in Victoria, Australia.
Samriddhi Thakur et al. PLoS Negl Trop Dis 2024 11 (11) e0012666 -
Molecular Analysis of Coxsackievirus B2 Associated With Severe Symptoms of the Central Nervous System.
Ilana S Fratty et al. J Med Virol 2024 11 (11) e70066 -
Enterovirus D68: Genomic and Clinical Comparison of 2 Seasons of Increased Viral Circulation and Discrepant Incidence of Acute Flaccid Myelitis-Maryland, USA.
Amary Fall et al. Open Forum Infect Dis 2024 11 (11) ofae656 -
Insecticide resistance and population structure of the invasive malaria vector, Anopheles stephensi, from Fiq, Ethiopia.
Jeanne N Samake et al. Sci Rep 2024 11 (1) 27516
DETECTION / DIAGNOSIS
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Combining interferon-γ release assays and metagenomic next-generation sequencing for diagnosis of pulmonary tuberculosis: a retrospective study.
Yanyan Liu et al. BMC Infect Dis 2024 11 (1) 1316 -
Genomic epidemiology of early SARS-CoV-2 transmission dynamics in Bangladesh.
L Carnegie et al. Virol J 2024 11 (1) 291 -
Technological Barriers to Routine Genomic Surveillance for Vaccine Development Against SARS-CoV-2 in Africa: A Systematic Review.
Kimberly Cheryl Chido Konono et al. Influenza Other Respir Viruses 2024 11 (11) e70047 -
Application of Pan-Viral Metagenomic Sequencing on United States Air Force Academy Wastewater to Uncover Potential Causes of Acute Gastroenteritis.
Michael A Mechikoff et al. Mil Med 2024 11 -
Emergence of a New Sublineage of Candida auris Causing Nosocomial Transmissions - Beijing Municipality, China, March-September 2023.
Zhenjia Liu et al. China CDC Wkly 2024 11 (44) 1147-1151 -
Geo-classification of drug-resistant travel-associated Plasmodium falciparum using Pfs47 and Pfcpmp gene sequences (USA, 2018-2021).
Edwin Pierre-Louis et al. Antimicrob Agents Chemother 2024 11 e0120324
EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION
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Five-year VIM-producing Pseudomonas aeruginosa outbreak in four Belgian ICUs, an investigation report (2019-2023).
Marco Moretti et al. Am J Infect Control 2024 9 (12) 1425-1431 -
Genomic analysis of the early COVID-19 pandemic in Haiti reveals Caribbean-specific variant dynamics.
Alexandra Mushegian et al. PLOS Glob Public Health 2024 11 (11) e0003536 -
Investigation of an outbreak of hepatitis E virus 4d reveals the importance of good kitchen hygiene.
Yuan Sun et al. Int J Food Microbiol 2024 11 110973 -
HIV phylogenetic clusters point to unmet hiv prevention, testing and treatment needs among men who have sex with men in kenya.
François Cholette et al. BMC Infect Dis 2024 11 (1) 1323 -
Epidemiologic and genomic characterization of an outbreak of Rift Valley fever among humans and dairy cattle in northern Tanzania.
Deng B Madut et al. J Infect Dis 2024 11 -
Genomic reconstruction of an azole-resistant Candida parapsilosis outbreak and the creation of a multi-locus sequence typing scheme: a retrospective observational and genomic epidemiology study.
Phillip J T Brassington et al. Lancet Microbe 2024 11 100949
ANTIMICROBIALS / VACCINES / INTERVENTIONS
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Effectiveness of bivalent mrna vaccines in preventing symptomatic SARS-CoV-2 infection-increasing community access to testing program, United States, January-September 2023
Ciesla, A. A., et al. Influenza Other Respir Viruses 2024 18 (11) e70038 -
Association of mRNA COVID-19 vaccination and reductions in Post-COVID Conditions following SARS-CoV-2 infection in a US prospective cohort of essential workers.
Josephine Mak et al. J Infect Dis 2024 11
HOST-MICROBE INTERACTIONS
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Cross-sectional and longitudinal genotype to phenotype surveillance of SARS-CoV-2 variants over the first four years of the COVID-19 pandemic.
Anouschka Akerman et al. EBioMedicine 2024 11 105415 -
Exploring the genomic basis of Mpox virus-host transmission and pathogenesis.
Brayden Young et al. mSphere 2024 11 e0057624
Disclaimer: Articles listed in the Advanced Molecular Detection Clips are selected by Public Health Genomics Branch to provide current awareness of the scientific literature and news. Inclusion in the clips does not necessarily represent the views of the Centers for Disease Control and Prevention nor does it imply endorsement of the article's methods or findings. CDC and DHHS assume no responsibility for the factual accuracy of the items presented. The selection, omission, or content of items does not imply any endorsement or other position taken by CDC or DHHS. Opinion, findings and conclusions expressed by the original authors of items included in the Clips, or persons quoted therein, are strictly their own and are in no way meant to represent the opinion or views of CDC or DHHS. References to publications, news sources, and non-CDC Websites are provided solely for informational purposes and do not imply endorsement by CDC or DHHS.
- Page last reviewed:Feb 1, 2024
- Page last updated:Jan 16, 2025