Advanced Molecular Detection Clips Content (Published on 11/10/2022)
NEWS
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U.K. researchers cure man who had coronavirus infection for over 400 days
Bisset V. Washington Post, Nov 4, 2022. -
Public Health Steps Slowed SARS-CoV-2 Transmission in Switzerland
GenomeWeb, Nov 9, 2022. -
U.S. set to face third Covid winter, this time without key tools and treatments
Joseph A, Mast J. STAT, Nov 10, 2022. -
Can mRNA vaccines transform the fight against Ebola?
Kozlov M. Nature, Nov 7, 2022. -
Dengue vaccine poised for roll-out but safety concerns linger
Mallapaty S. Nature, Nov 9, 2022. -
This Gulp of Engineered Bacteria Is Meant to Treat Disease
Mullin E. Wired, Nov 7, 2022.
CONCEPTS / COMMENTS
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The one health perspective to improve environmental surveillance of zoonotic viruses: lessons from COVID-19 and outlook beyond.
Leifels Mats et al. ISME communications 2022 11 (1) 107 -
Circulating Poliovirus in New York - New Instance of an Old Problem.
Pallansch Mark A et al. The New England journal of medicine 2022 10 (19) 1725-1728
METHODS / TOOLS
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KARGAMobile: Android app for portable, real-time, easily interpretable analysis of antibiotic resistance genes via nanopore sequencing.
Barquero Alexander et al. Frontiers in bioengineering and biotechnology 2022 11 1016408 -
spa Typing of Methicillin-Resistant Staphylococcus aureus Based on Whole-Genome Sequencing: the Impact of the Assembler.
Mollerup Sarah et al. Microbiology spectrum 2022 11 e0218922 -
Targeted genomic sequencing with probe capture for discovery and surveillance of coronaviruses in bats.
Kuchinski Kevin S et al. eLife 2022 11 -
Lineage abundance estimation for SARS-CoV-2 in wastewater using transcriptome quantification techniques.
Baaijens Jasmijn A et al. Genome biology 2022 11 (1) 236 -
Development of multiplex PCR based NGS protocol for whole genome sequencing of West Nile virus lineage 2 directly from biological samples using Oxford Nanopore platform
Tesovic B, et al. Diagn Microbiol Infect Dis, Nov 5, 2022.
EVOLUTION / ECOLOGY / POPULATIONS
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Continued Circulation of Tick-Borne Encephalitis Virus Variants and Detection of Novel Transmission Foci, the Netherlands.
Esser Helen J et al. Emerging infectious diseases 2022 10 (12) -
Complete Genome Sequence of O'nyong Nyong Virus Isolated from a Febrile Patient in 2017 in Uganda.
Ledermann Jeremy P et al. Microbiology resource announcements 2022 11 e0069222 -
Rapid spread of a new West Nile virus lineage 1 associated with increased risk of neuroinvasive disease during a large outbreak in northern Italy, 2022: One Health analysis.
Barzon Luisa et al. Journal of travel medicine 2022 11 -
Occurrence and molecular characterization of Acanthamoeba, Naegleria fowleri and Blastocystis in water samples from various sources in Egypt.
Elseadawy Rana et al. Acta tropica 2022 11 106733 -
Meta-transcriptomics reveals potential virus transfer between Aedes communis mosquitoes and their parasitic water mites.
Ortiz-Baez Ayda Susana et al. Virus evolution 2022 11 (2) veac090
PATHOGENICITY / ANTIMICROBIAL RESISTANCE
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Sequence-Based Identification of Metronidazole-Resistant Clostridioides difficile Isolates.
Smits Wiep Klaas et al. Emerging infectious diseases 2022 10 (11) 2308-2311 -
Parallel Evolution of Pseudomonas aeruginosa during a Prolonged ICU-Infection Outbreak.
Cameron David R et al. Microbiology spectrum 2022 11 e0274322 -
Genomic analysis of group A Streptococcus isolated during a correctional facility outbreak of MRSA in 2004.
Lynch Tarah et al. Journal of the Association of Medical Microbiology and Infectious Disease Canada = Journal officiel de l'Association pour la microbiologie medicale et l'infectiologie Canada 2022 11 (1) 23-35 -
Emerging multidrug resistance contributes to treatment failure in Mycoplasma genitalium infected patients in China
Li L, et al. Diagn Microbiol Infect Dis, Nov 7, 2022. -
Multiple pathways for SARS-CoV-2 resistance to nirmatrelvir.
Iketani Sho et al. Nature 2022 11 -
Prevalence of Plasmodium falciparum haplotypes associated with resistance to sulfadoxine-pyrimethamine and amodiaquine before and after upscaling of seasonal malaria chemoprevention in seven African countries: a genomic surveillance study.
Beshir Khalid B et al. The Lancet. Infectious diseases 2022 11
DETECTION / DIAGNOSIS
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A combined effort of 11 laboratories in the WHO African region to improve quality of Buruli ulcer PCR diagnosis: The "BU-LABNET".
Marion Estelle et al. PLoS neglected tropical diseases 2022 11 (11) e0010908 -
Practical considerations to establish a validated platform for pooled detection of SARS-CoV-2 by droplet digital PCR.
Heckel Sofía et al. PloS one 2022 11 (11) e0271860 -
Evidence for SARS-CoV-2 Delta and Omicron co-infections and recombination.
Alexandre Bolze et al. Med 2022 11 (12) 848-859.e4 -
Real-time whole genome sequencing to guide patient-tailored therapy of SARS-CoV-2 infection
Snell LB, et al. Clin Infect Dis. 2022 Nov 3;ciac864. -
Multiple infection and HIV superinfection among persons who inject drugs in Indonesia and Ukraine.
Palumbo Philip J et al. The Journal of infectious diseases 2022 11 -
Novel application of one-step pooled molecular testing and maximum likelihood approaches to estimate the prevalence of malaria parasitaemia among rapid diagnostic test negative samples in western Kenya
Shah MP, et al. Malar J. 2022 Nov 6;21(1):319. -
Integrated xenosurveillance of Loa loa, Wuchereria bancrofti, Mansonella perstans and Plasmodium falciparum using mosquito carcasses and faeces: A pilot study in Cameroon.
Pryce Joseph et al. PLoS neglected tropical diseases 2022 11 (11) e0010868 -
Molecular Detection of Haplorchis pumilio Eggs in Schoolchildren, Kome Island, Lake Victoria, Tanzania.
Shin Hyejoo et al. Emerging infectious diseases 2022 10 (11) 2298-2301
EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION
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Analysis of the twenty-six largest outbreaks of tuberculosis in Aragon using whole-genome sequencing for surveillance purposes.
Comín Jessica et al. Scientific reports 2022 11 (1) 18766 -
Quantifying Mycobacterium tuberculosis transmission dynamics across global settings: a systematic analysis.
Smith Jonathan et al. American journal of epidemiology 2022 10 -
Swiss public health measures associated with reduced SARS-CoV-2 transmission using genome data.
Nadeau Sarah A et al. Science translational medicine 2022 11 eabn7979 -
Measles cases in Split-Dalmatia County (a Croatian tourist region), in May-July 2019: outbreak report and lessons learnt.
Brzovic Milka et al. European journal of public health 2022 11 -
Cluster of Norovirus Genogroup IX Outbreaks in Long-Term Care Facilities, Utah, USA, 2021.
Osborn BreAnne et al. Emerging infectious diseases 2022 10 (11) 2312-2315
ANTIMICROBIALS / VACCINES / INTERVENTIONS
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Genetic and phenotypic stability of poliovirus shed from infants who received novel type 2 or Sabin type 2 oral poliovirus vaccines in Panama: an analysis of two clinical trials
Wahid R, et al. Lancet Microbe. 2022 Nov 1;S2666-5247(22)00254-3.
HOST-MICROBE INTERACTIONS
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Exome-wide association study to identify rare variants influencing COVID-19 outcomes: Results from the Host Genetics Initiative.
Butler-Laporte Guillaume et al. PLoS genetics 2022 11 (11) e1010367 -
COVID-19 and systemic lupus erythematosus genetics: A balance between autoimmune disease risk and protection against infection.
Wang Yuxuan et al. PLoS genetics 2022 11 (11) e1010253 -
A comprehensive knowledgebase of known and predicted human genetic variants associated with COVID-19 susceptibility and severity
Kars ME, et al. medRxiv, Nov 7, 2022. -
Rare, convergent antibodies targeting the stem helix broadly neutralize diverse betacoronaviruses.
Dacon Cherrelle et al. Cell host & microbe 2022 11
Disclaimer: Articles listed in the Advanced Molecular Detection Clips are selected by Public Health Genomics Branch to provide current awareness of the scientific literature and news. Inclusion in the clips does not necessarily represent the views of the Centers for Disease Control and Prevention nor does it imply endorsement of the article's methods or findings. CDC and DHHS assume no responsibility for the factual accuracy of the items presented. The selection, omission, or content of items does not imply any endorsement or other position taken by CDC or DHHS. Opinion, findings and conclusions expressed by the original authors of items included in the Clips, or persons quoted therein, are strictly their own and are in no way meant to represent the opinion or views of CDC or DHHS. References to publications, news sources, and non-CDC Websites are provided solely for informational purposes and do not imply endorsement by CDC or DHHS.
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