Advanced Molecular Detection Clips Content (Published on 11/07/2024)
NEWS
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Scientists track emergence of novel H5N1 flu reassortant in Cambodia
Schnirring L. CIDRAP, Nov 6, 2024. -
Monkeypox virus keeps getting better at spreading among humans
Kozlov M. Nature, Oct 30, 2024. -
UK identifies 4 cases of new mpox variant, the first cluster outside Africa
AP, Nov 6, 2024. -
Broader screening could help prevent spread of Candida auris, study finds
Dall C. CIDRAP, Nov 1, 2024. -
Guiding phage therapy with genomic surveillance
Leitner L, McCallin S. Nat Microbiol, Oct 28, 2024.
CONCEPTS / COMMENTS
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Identifying factors that influence the use of pathogen genomics in Australia and New Zealand: a protocol.
James D H Ong et al. Front Public Health 2024 11 1426318
METHODS / TOOLS
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CoVEx: SARS-CoV-2 Mutation Explorer for genomic surveillance.
Melany Calderón-Osorno et al. Infect Genet Evol 2024 11 105521 -
A phylogenetics and variant calling pipeline to support SARS-CoV-2 genomic epidemiology in the UK.
Rachel Colquhoun et al. Virus Evol 2024 11 (1) veae083 -
Investigating and forecasting infectious disease dynamics using epidemiological and molecular surveillance data.
Gerardo Chowell et al. Phys Life Rev 2024 11 294-327 -
Integrating contact tracing data to enhance outbreak phylodynamic inference: a deep learning approach.
Ruopeng Xie et al. Mol Biol Evol 2024 11
EVOLUTION / ECOLOGY / POPULATIONS
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Expanded geographic distribution for two Legionella pneumophila sequence types of clinical concern.
Jennafer A P Hamlin et al. mSphere 2024 10 e0075623 -
Bartonella infections are rare in blood-fed Ixodes scapularis and Ixodes pacificus ticks collected from rodents in the United States.
Ying Bai et al. Parasit Vectors 2024 10 (1) 442 -
Genomic diversity of Campylobacter jejuni and Campylobacter coli isolates recovered from human and poultry in Australia and New Zealand, 2017 to 2019.
Danielle M Cribb et al. Microb Genom 2024 11 (11) -
Genetic diversity and spread of recombinant coxsackievirus A4 in hand, foot, and mouth disease cases in Bangkok, Thailand: 2017-2023.
Jiratchaya Puenpa et al. Sci Rep 2024 11 (1) 26902 -
Complete genome sequences of nine double recombinant vaccine-derived novel oral poliovirus type 2 genomes from Nigeria 2023-2024.
Christina J Castro et al. Microbiol Resour Announc 2024 10 e0088124 -
Influenza A virus within-host evolution and positive selection in a densely sampled household cohort over three seasons.
Emily E Bendall et al. Virus Evol 2024 10 (1) veae084
PATHOGENICITY / ANTIMICROBIAL RESISTANCE
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Investigating Anthrax-Associated Virulence Genes among Archival and Contemporary Bacillus cereus Group Genomes.
Susanna J Sabin et al. Pathogens 2024 10 (10) -
Longitudinal genomics reveals carbapenem-resistant Acinetobacter baumannii population changes with emergence of highly resistant ST164 clone.
Haiyang Liu et al. Nat Commun 2024 11 (1) 9483 -
Myroides species, pathogenic spectrum and clinical microbiology sight in Mexican isolates.
Claudia Adriana Colín-Castro et al. PLoS One 2024 11 (11) e0310262 -
Emerging threat of artemisinin partial resistance markers (pfk13 mutations) in Plasmodium falciparum parasite populations in multiple geographical locations in high transmission regions of Uganda.
Bosco B Agaba et al. Malar J 2024 11 (1) 330
DETECTION / DIAGNOSIS
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Wastewater Surveillance for Poliovirus in Selected Jurisdictions, United States, 2022-2023.
Erin R Whitehouse et al. Emerg Infect Dis 2024 10 (11) 2279-2287 -
Genomic Surveillance for SARS-CoV-2 Variants: Circulation of Omicron XBB and JN.1 Lineages - United States, May 2023-September 2024.
Kevin C Ma et al. MMWR Morb Mortal Wkly Rep 2024 10 (42) 938-945 -
HIV DNA Levels in Persons Who Acquired HIV in the Setting of Long-Acting Cabotegravir for HIV Prevention: Analysis of Cases from HPTN 083 and 084.
Jessica M Fogel et al. AIDS Res Hum Retroviruses 2024 10 -
Discriminating North American Swine Influenza Viruses with a Portable, One-Step, Triplex Real-Time RT-PCR Assay, and Portable Sequencing.
Marie K Kirby et al. Viruses 2024 10 (10) -
Locally Acquired (Autochthonous) Mosquito-Transmitted Plasmodium vivax Malaria - Saline County, Arkansas, September 2023.
Ashleah P Courtney et al. MMWR Morb Mortal Wkly Rep 2024 10 (42) 646-649 -
Longitudinal genomic surveillance of a UK intensive care unit shows a lack of patient colonisation by multi-drug-resistant Gram-negative bacterial pathogens.
Ann E Snaith et al. Microb Genom 2024 11 (11) -
Limit of detection of Salmonella ser. Enteritidis using culture-based versus culture-independent diagnostic approaches.
L M Bradford et al. Microbiol Spectr 2024 11 e0102724 -
Deciphering Bordetella pertussis epidemiology through culture-independent multiplex amplicon and metagenomic sequencing.
Laurence Don Wai Luu et al. J Clin Microbiol 2024 11 e0117824 -
Evaluating methods for identifying and quantifying Streptococcus pneumoniae co-colonization using next-generation sequencing data.
Jada Hackman et al. Microbiol Spectr 2024 11 e0364323 -
Evaluation of a microfluidic-based point-of-care prototype with customized chip for detection of bacterial clusters.
Janina Treffon et al. Microbiol Spectr 2024 11 e0086224 -
Enhancing SARS-CoV-2 Lineage Surveillance through the Integration of a Simple and Direct qPCR-Based Protocol Adaptation with Established Machine Learning Algorithms.
Cleber Furtado Aksenen et al. Anal Chem 2024 11 -
Genomic surveillance of Canadian airport wastewater samples allows early detection of emerging SARS-CoV-2 lineages.
Alyssa K Overton et al. Sci Rep 2024 11 (1) 26534 -
Enhanced echovirus 11 genomic surveillance in neonatal infections in Spain following a European alert reveals new recombinant forms linked to severe cases, 2019 to 2023.
Maria Dolores Fernandez-Garcia et al. Euro Surveill 2024 11 (44) -
Fully Integrated Microfluidic Digital Chip for Simple and Highly Quantitative Detection of Norovirus.
Li Liu et al. Anal Chem 2024 11 -
International external quality assessment study for detection of monkeypox virus by PCR supporting laboratory preparedness during the 2022-2023 mpox outbreak and beyond.
Rosina Ehmann et al. J Clin Virol 2024 11 105741
EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION
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Successful control of an outbreak of Panton-Valentine leucocidin positive meticillin resistant Staphylococcus aureus in a National Burns Unit through early detection by whole genome sequencing.
R Traynor et al. Infect Prev Pract 2024 11 (4) 100400 -
Carbapenem-resistant Klebsiella oxytoca transmission linked to preoperative shaving in emergency neurosurgery, tracked by rapid detection via chromogenic medium and whole genome sequencing.
Yun-Lan Jiang et al. Front Cell Infect Microbiol 2024 11 1464411 -
Genomic perspectives on foodborne illness.
David J Lipman et al. Proc Natl Acad Sci U S A 2024 11 (46) e2411894121 -
Source attribution of Listeria monocytogenes in the Netherlands.
Lapo Mughini-Gras et al. Int J Food Microbiol 2024 11 110953 -
Genomic epidemiology reveals the variation and transmission properties of SARS-CoV-2 in a single-source community outbreak.
Ning Zhao et al. Virus Evol 2024 11 (1) veae085 -
Clinical and Genomic Epidemiology of Coxsackievirus A21 and Enterovirus D68 in Homeless Shelters, King County, Washington, USA, 2019-2021.
Sarah N Cox et al. Emerg Infect Dis 2024 10 (11) 2250-2260
ANTIMICROBIALS / VACCINES / INTERVENTIONS
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Prediction of strain level phage-host interactions across the Escherichia genus using only genomic information.
Baptiste Gaborieau et al. Nat Microbiol 2024 11 (11) 2847-2861
HOST-MICROBE INTERACTIONS
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Human monoclonal antibody cloning and expression with overlap extension PCR and short DNA fragments.
Zachary Ende et al. J Immunol Methods 2024 10 113768
Disclaimer: Articles listed in the Advanced Molecular Detection Clips are selected by Public Health Genomics Branch to provide current awareness of the scientific literature and news. Inclusion in the clips does not necessarily represent the views of the Centers for Disease Control and Prevention nor does it imply endorsement of the article's methods or findings. CDC and DHHS assume no responsibility for the factual accuracy of the items presented. The selection, omission, or content of items does not imply any endorsement or other position taken by CDC or DHHS. Opinion, findings and conclusions expressed by the original authors of items included in the Clips, or persons quoted therein, are strictly their own and are in no way meant to represent the opinion or views of CDC or DHHS. References to publications, news sources, and non-CDC Websites are provided solely for informational purposes and do not imply endorsement by CDC or DHHS.
- Page last reviewed:Feb 1, 2024
- Page last updated:Jan 9, 2025