Advanced Molecular Detection Clips Content (Published on 10/31/2019)
Zoonotic Disease Research Program Shut Down
Makowski E. The Scientist, Oct 28, 2019.
Lyme Disease Test Could Enable 15-Minute Results at the Point of Care
O'Connor L. 360dx, Oct 21, 2019.
Is Crispr the Next Antibiotic?
Sheikh K. New York Times, Oct 28, 2019.
Backgrounder: NIH Collaboration on Gene-Based Cures for SCD and HIV
NIH, Oct 23, 2019.
How measles infections can wipe away immunity to other diseases
Branswell H. STAT, Oct 31, 2019.
Inexpensive LAMP-Based Schistosome Tests Could Help Eradication Efforts
Johnson M. GenomeWeb, Oct 29, 2019.
Massachusetts General Hospital oversaw trial that led to the first death from a fecal transplant, a new paper shows
Sheridan K. STAT, Oct 30, 2019.
EVENTS / TRAINING / WEB RESOURCES
(report) Wellcome Trust, Oct 29, 2019.
The Convergence of Infectious Diseases and Noncommunicable Diseases: Proceedings of a Workshop
The Convergence of Infectious Diseases and Noncommunicable Diseases
(workshop report) NASEM, 2019.
An Expanded Platform for Young Scientists
(editorial) Imperiale MJ, Blader IJ. mSphere, Oct 18, 2019.
Public Health Alliance for Genomic Epidemiology
Twitter account: @pha4ge
CONCEPTS / COMMENTS
Fecal Microbiota Transplantation for Dysbiosis--Predictable Risks
Blaser MJ. New Engl J Med, Oct 30, 2019.
METHODS / TOOLS
treeio: an R package for phylogenetic tree input and output with richly annotated and associated data.
Wang Li-Gen et al. Molecular biology and evolution 2019 Oct
Living Trees: High Quality Reproducible and Reusable Construction of Bacterial Phylogenetic Trees.
Hu Dalong et al. Molecular biology and evolution 2019 Oct
Parallel and scalable workflow for the analysis of Oxford Nanopore direct RNA sequencing datasets
Cozzuto L, et al. bioRxiv, Oct 28, 2019.
An iterative and automated computational pipeline for untargeted strain-level identification using MS/MS spectra from pathogenic samples
Kuhring M, et al. bioRxiv, Oct 24, 2019.
Pangenomic read mapping
Anari SS, et al. bioRxiv, Oct 24, 2019.
Accurate and Complete Genomes from Metagenomes
Chen LX, et al. bioRxiv, Oct 29, 2019.
CARD 2020: antibiotic resistome surveillance with the comprehensive antibiotic resistance database.
Alcock Brian P et al. Nucleic acids research 2019 Oct
EVOLUTION / ECOLOGY / POPULATIONS
Whole Genome Sequencing to study the phylogenetic structure of serotype a Haemophilus influenzae recovered from patients in Canada.
Tsang Raymond S W et al. Canadian journal of microbiology 2019 Oct
National Epidemiology and Evolutionary History of Four Hand, Foot and Mouth Disease-Related Enteroviruses in China from 2008 to 2016.
Fu Xuemin et al. Virologica Sinica 2019 Oct
Locally Acquired Human Infection with Swine-Origin Influenza A(H3N2) Variant Virus, Australia, 2018.
Deng Yi-Mo et al. Emerging infectious diseases 2020 Jan (1)
PATHOGENICITY / ANTIMICROBIAL RESISTANCE
Transient Silencing of Antibiotic Resistance by Mutation Represents a Significant Potential Source of Unanticipated Therapeutic Failure.
Kime Louise et al. mBio 2019 10 (5)
Transmission and evolution of OXA-48-producing Klebsiella pneumoniae ST11 in a single hospital in Taiwan.
Lu Min-Chi et al. The Journal of antimicrobial chemotherapy 2019 Oct
Persistent circulation of a fluoroquinolone-resistant Salmonella enterica Typhi clone in the Indian subcontinent.
Britto Carl D et al. The Journal of antimicrobial chemotherapy 2019 Oct
International Spread of Multidrug-Resistant Campylobacter coli in Men who have Sex with Men in Washington State and Quebec, 2015-2018.
Greninger Alexander L et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2019 Oct
Dissecting the molecular evolution of fluoroquinolone-resistant Shigella sonnei.
Chung The Hao et al. Nature communications 2019 Oct (1) 4828
Pre-detection history of extensively drug-resistant tuberculosis in KwaZulu-Natal, South Africa.
Brown Tyler S et al. Proceedings of the National Academy of Sciences of the United States of America 2019 Oct
DETECTION / DIAGNOSIS
A review of a 13-month period of FilmArray Meningitis/Encephalitis panel implementation as a first-line diagnosis tool at a university hospital.
Boudet Agathe et al. PloS one 2019 (10) e0223887
A Multiplexed Serologic Test for Diagnosis of Lyme Disease for Point-of-Care Use.
Arumugam Siddarth et al. Journal of clinical microbiology 2019 Oct
Genotyping of Mycobacterium tuberculosis Rifampin Resistance Associated Mutations Using Data From Xpert® MTB/RIF Ultra Enables Large-Scale Tuberculosis Molecular Epidemiology Studies.
Weinrick Brian et al. Journal of clinical microbiology 2019 Oct
Automatic identification of individual rpoB gene mutations responsible for rifampin resistance in Mycobacterium tuberculosis using melting temperature signatures generated by the Xpert® MTB/RIF Ultra* assay.
Cao Yuan et al. Journal of clinical microbiology 2019 Sep
EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION
Whole genome sequencing detects minimal clustering among Escherichia coli Sequence Type 131 H30 isolates collected from U.S. children's hospitals
Miles-Jay A, et al. medRxiv, Oct 29, 2019.
Ethnically diverse urban transmission networks of Neisseria gonorrhoeae without evidence of HIV serosorting.
Dave Jayshree et al. Sexually transmitted infections 2019 Oct
Community outbreak of hepatitis A disproportionately affecting men who have sex with men in Toronto, Canada, January 2017-November 2018.
Sachdeva H et al. Canada communicable disease report = Releve des maladies transmissibles au Canada 2019 Oct (10) 262-268
Genetic Epidemiology reveals three chronic reservoir areas with recurrent population mobility challenging poliovirus eradication in Pakistan.
Akhtar Ribqa et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2019 Oct
ANTIMICROBIALS / VACCINES / INTERVENTIONS
Efficient inter-species conjugative transfer of a CRISPR nuclease for targeted bacterial killing.
Hamilton Thomas A et al. Nature communications 2019 Oct (1) 4544
Drug-Resistant E. coli Bacteremia Transmitted by Fecal Microbiota Transplant.
DeFilipp Zachariah et al. The New England journal of medicine 2019 Oct
Association of CR2 genotypes with the acquisition of HIV infection in a trial of recombinant glycoprotein 120 Vaccine.
Meza Giovanna et al. AIDS (London, England) 2019 Oct
Infectious vaccine-derived rubella viruses emerge, persist, and evolve in cutaneous granulomas of children with primary immunodeficiencies.
Perelygina Ludmila et al. PLoS pathogens 2019 Oct (10) e1008080
Secretor Status is Associated with Susceptibility to Disease in a Large GII.6 Norovirus Foodborne Outbreak.
Sharma Sumit et al. Food and environmental virology 2019 Oct
Untapped "-omics": the microbial metagenome, estrobolome, and their influence on the development of breast cancer and response to treatment.
Komorowski A S et al. Breast cancer research and treatment 2019 Oct
The microbiota regulate neuronal function and fear extinction learning.
Chu Coco et al. Nature 2019 10 (7779) 543-548
The respiratory virome and exacerbations in patients with chronic obstructive pulmonary disease.
van Rijn Anneloes L et al. PloS one 2019 (10) e0223952
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