Advanced Molecular Detection Clips Content (Published on 10/29/2020)
NEWS
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Europe's public-health systems gear up for future epidemics
Ippolito G. Nature, Oct 27, 2020. -
Mass Spec Struggles to Demonstrate Utility as Platform for SARS-CoV-2 Dx
Bonislawski A. 360dx, Oct 22, 2020. -
Low risk or dicey? Two new reports paint different pictures of COVID-19 danger while flying
Gilbertson D. USA Today, Oct 27, 2020. -
Sewage testing shows a country flush with coronavirus cases
Fox M. CNN, Oct 28, 2020. -
CRISPR Screen Identifies Host Genes Needed for SARS-CoV-2 Infection, Potential Drug Targets
GenomeWeb, Oct 26, 2020. -
COVID-19 Multiomic Immune Response Study Reveals Differences in Disease Progression, Severity
GenomeWeb, Oct 28, 2020. -
Ancient Plague Genomes Point to Sources of Outbreaks in Europe After Black Death Pandemic
GenomeWeb, Oct 26, 2020. -
Malaria Parasites in Dry and Wet Season Exhibit Different Gene Transcription Profiles
GenomeWeb, Oct 26, 2020.
EVENTS / TRAINING / WEB RESOURCES
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A Department of Defense Laboratory Consortium Approach to Next Generation Sequencing and Bioinformatics Training for Infectious Disease Surveillance in Kenya.
Maljkovic Berry Irina et al. Frontiers in genetics 2020 577563 -
2019 Tabletop Exercise for Laboratory Diagnosis and Analyses of Unknown Disease Outbreaks by the Korea Centers for Disease Control and Prevention
Kim IH, et al. Osong Public Health Res Perspect. 2020 Oct;11(5):280-285.
CONCEPTS / COMMENTS
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An open-source molecular diagnostic platform approach for outbreak and epidemic preparedness.
Emperador Devy M et al. African journal of laboratory medicine 2020 (2) 1017 -
Translation of genomic epidemiology of infectious pathogens: Enhancing African genomics hubs for outbreaks.
Oboh Mary Aigbiremo et al. International journal of infectious diseases : IJID : official publication of the International Society for Infectious Diseases 2020 Oct 449-451 -
Ten simple rules for biologists initiating a collaboration with computer scientists.
Cechova Monika et al. PLoS computational biology 2020 Oct (10) e1008281 -
What are the origins of growing microbial resistance? Both Lamarck and Darwin were right.
Guevara Salazar Juan Alberto et al. Expert review of anti-infective therapy 2020 Oct 1-7 -
Neanderthal DNA highlights complexity of COVID risk factors
Luo Y. Nature, Oct 26, 2020. -
Susceptibility to severe COVID-19.
Beck David B et al. Science (New York, N.Y.) 2020 10 (6515) 404-405
METHODS / TOOLS
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Optimizing open data to support one health: best practices to ensure interoperability of genomic data from bacterial pathogens.
Ruth E Timme et al. One Health Outlook 2020 10 (1) 20 -
MDACP: A Pathogen Genome and Metagenome Analysis Cloud Platform
Han N, et al. Front Genet 2020 Aug 31;11:1007. -
Performance of Targeted Library Preparation Solutions for SARS-CoV-2 Whole Genome Analysis.
Klempt Petr et al. Diagnostics (Basel, Switzerland) 2020 Sep (10) -
Rapid and inexpensive whole-genome sequencing of SARS-CoV-2 using 1200 bp tiled amplicons and Oxford Nanopore Rapid Barcoding.
Freed Nikki E et al. Biology methods & protocols 2020 (1) bpaa014 -
Accommodating individual travel history and unsampled diversity in Bayesian phylogeographic inference of SARS-CoV-2.
Lemey Philippe et al. Nature communications 2020 10 (1) 5110
EVOLUTION / ECOLOGY / POPULATIONS
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Transmission Dynamics and Microevolution of Neisseria meningitidis During Carriage and Invasive Disease in High School Students in Georgia and Maryland, 2006-2007.
Mustapha Mustapha M et al. The Journal of infectious diseases 2020 10 (12) 2038-2047 -
Lymphogranuloma venereum genovariants in men having sex with men in Italy
Marangoni A, et al. Sex Transm Infect, Oct 26, 2020. -
Higher genome mutation rates of Beijing lineage of Mycobacterium tuberculosis during human infection.
Hakamata Mariko et al. Scientific reports 2020 Oct (1) 17997 -
Mycoplasma bovis in Nordic European Countries: Emergence and Dominance of a New Clone.
Tardy Florence et al. Pathogens (Basel, Switzerland) 2020 Oct (11) -
A genomic and historical synthesis of plague in 18th century Eurasia.
Guellil Meriam et al. Proceedings of the National Academy of Sciences of the United States of America 2020 Oct -
Prevalence and Bayesian Phylogenetics of Enteroviruses Derived From Environmental Surveillance Around Polio Vaccine Switch Period in Shandong Province, China.
Zhao Chenxu et al. Food and environmental virology 2020 Oct -
Molecular characterization of the re-emerging West Nile virus in avian species and equids in Israel, 2018, and pathological description of the disease.
Schvartz Gili et al. Parasites & vectors 2020 Oct (1) 528 -
Global Spread of the B5 Subgenotype EV-A71 and the Phylogeographical Analysis of Chinese Migration Events.
Huang Keqiang et al. Frontiers in cellular and infection microbiology 2020 475 -
Genetic Markers of Adaptation of Plasmodium falciparum to Transmission by American Vectors Identified in the Genomes of Parasites from Haiti and South America.
Tagliamonte Massimiliano S et al. mSphere 2020 10 (5) -
Genetic analysis reveals unique characteristics of Plasmodium falciparum parasite populations in Haiti.
Daniels Rachel F et al. Malaria journal 2020 Oct (1) 379 -
Population genomics reveals the expansion of highly inbred Plasmodium vivax lineages in the main malaria hotspot of Brazil.
de Oliveira Thaís Crippa et al. PLoS neglected tropical diseases 2020 Oct (10) e0008808
PATHOGENICITY / ANTIMICROBIAL RESISTANCE
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Is antimicrobial resistance evolution accelerating?
Witzany Christopher et al. PLoS pathogens 2020 Oct (10) e1008905 -
Molecular and epidemiological surveillance of polymyxin-resistant Klebsiella pneumoniae strains isolated from Brazil with multiple mgrB gene mutations.
da Silva Kesia Esther et al. International journal of medical microbiology : IJMM 2020 Oct (7) 151448 -
Molecular evaluation of fluoroquinolone resistance in serial Mycobacterium tuberculosis isolates from individuals diagnosed with multidrug-resistant tuberculosis.
Willby Melisa et al. Antimicrobial agents and chemotherapy 2020 Oct -
Identifying Candidate Genetic Markers of CDV Cross-Species Pathogenicity in African Lions.
Weckworth Julie K et al. Pathogens (Basel, Switzerland) 2020 Oct (11) -
Changes in the frequencies of Plasmodium falciparum dhps and dhfr drug-resistant mutations in children from Western Kenya from 2005 to 2018: the rise of Pfdhps S436H.
Pacheco M Andreína et al. Malaria journal 2020 Oct (1) 378
DETECTION / DIAGNOSIS
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Sequential quadriplex real-time PCR for identifying 20 common emm types of Group A Streptococcus .
Velusamy Srinivasan et al. Journal of clinical microbiology 2020 Oct -
High precision Neisseria gonorrhoeae variant and antimicrobial resistance calling from metagenomic Nanopore sequencing.
Sanderson Nicholas D et al. Genome research 2020 Sep (9) 1354-1363 -
An open-source program (Haplo-ST) for whole-genome sequence typing shows extensive diversity of Listeria monocytogenes in outdoor environments and poultry processing plants.
Louha Swarnali et al. Applied and environmental microbiology 2020 Oct -
Tracking SARS-CoV-2 in Sewage: Evidence of Changes in Virus Variant Predominance during COVID-19 Pandemic.
Martin Javier et al. Viruses 2020 10 (10) -
A Sensitive, Rapid, and Portable CasRx-based Diagnostic Assay for SARS-CoV-2
Brogan DJ, et al. medRxiv, Oct 20, 2020. -
Rapid genomic characterization of SARS-CoV-2 viruses from clinical specimens using nanopore sequencing.
Li Jun et al. Scientific reports 2020 10 (1) 17492 -
Rapid deployment of SARS-CoV-2 testing: The CLIAHUB.
Crawford Emily D et al. PLoS pathogens 2020 Oct (10) e1008966 -
Development of a bio-inkjet printed LAMP test kit for detecting human African trypanosomiasis.
Hayashida Kyoko et al. PLoS neglected tropical diseases 2020 Oct (10) e0008753 -
Proteomic fingerprinting of Neotropical hard tick species (Acari: Ixodidae) using a self-curated mass spectra reference library.
Gittens Rolando A et al. PLoS neglected tropical diseases 2020 Oct (10) e0008849
EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION
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Quantifying acquisition and transmission of Enterococcus faecium using genomic surveillance
Gouliouris T, et al. Nat Microbiol, Oct 26, 2020. -
Human Campylobacteriosis Cases Traceable to Chicken Meat-Evidence for Disseminated Outbreaks in Finland.
Llarena Ann-Katrin et al. Pathogens (Basel, Switzerland) 2020 Oct (11) -
Uncovering two phases of early intercontinental COVID-19 transmission dynamics.
Yang Jing et al. Journal of travel medicine 2020 Oct -
Sequencing identifies multiple early introductions of SARS-CoV-2 to the New York City Region.
Maurano Matthew T et al. Genome research 2020 Oct -
Quantifying SARS-CoV-2 spread in Switzerland based on genomic sequencing data
Nadeau S, et al. medRxiv, Oct 27, 2020. -
A large national outbreak of COVID-19 linked to air travel, Ireland, summer 2020.
Murphy Nicola et al. Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin 2020 10 (42)
ANTIMICROBIALS / VACCINES / INTERVENTIONS
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Predicted coverage by 4CMenB vaccine against invasive meningococcal disease cases in the Netherlands.
Freudenburg-de Graaf W et al. Vaccine 2020 Oct -
Self-amplifying RNA vaccines for infectious diseases.
Bloom Kristie et al. Gene therapy 2020 Oct -
Vaccine design based on 16 epitopes of SARS-CoV-2 spike protein.
He Jinlei et al. Journal of medical virology 2020 Oct -
Development and Assessment of Two Highly Pathogenic Avian Influenza (HPAI) H5N6 Candidate Vaccine Viruses for Pandemic Preparedness.
Liu Li Qi et al. Biomedical and environmental sciences : BES 2020 Sep (9) 670-679
HOST-MICROBE INTERACTIONS
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Genetic Association of ACE2 rs2285666 Polymorphism With COVID-19 Spatial Distribution in India.
Srivastava Anshika et al. Frontiers in genetics 2020 564741 -
High-depth African genomes inform human migration and health
Choudhury A, et al. Nature 2020 Oct;586(7831):741-748.
Disclaimer: Articles listed in the Advanced Molecular Detection Clips are selected by Public Health Genomics Branch to provide current awareness of the scientific literature and news. Inclusion in the clips does not necessarily represent the views of the Centers for Disease Control and Prevention nor does it imply endorsement of the article's methods or findings. CDC and DHHS assume no responsibility for the factual accuracy of the items presented. The selection, omission, or content of items does not imply any endorsement or other position taken by CDC or DHHS. Opinion, findings and conclusions expressed by the original authors of items included in the Clips, or persons quoted therein, are strictly their own and are in no way meant to represent the opinion or views of CDC or DHHS. References to publications, news sources, and non-CDC Websites are provided solely for informational purposes and do not imply endorsement by CDC or DHHS.
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- Page last updated:Apr 18, 2024
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