Advanced Molecular Detection Clips Content (Published on 10/27/2016)
How scientists proved the wrong man was blamed for bringing HIV to the U.S.
Netburn D. Los Angeles Times, Oct 26, 2016.
Purdue Team Awarded $3.8M NIH Grant to Upgrade Metagenomics Data System
GenomeWeb, Oct 26, 2016.
Impact of Delays between the Clinical and Laboratory Standards Institute (CLSI) and the Food and Drug Administration (FDA) Revising Interpretive Criteria for Carbapenem-Resistant Enterobacteriaceae (CRE).
Bartsch Sarah M et al. Journal of clinical microbiology 2016 Aug
CONCEPTS / COMMENTS
Computational pan-genomics: status, promises and challenges.
et al. Briefings in bioinformatics 2016 Oct
The gut microbiomean emerging complex trait
Benson AK. Nat Genet, Oct 27, 2016.
METHODS / TOOLS
Ten Simple Rules for Digital Data Storage.
Hart Edmund M et al. PLoS computational biology 2016 Oct (10) e1005097
Impact of Sample Type and DNA Isolation Procedure on Genomic Inference of Microbiome Composition.
Knudsen Berith E et al. mSystems (5)
Emerging and Future Applications of Matrix-Assisted Laser Desorption Ionization Time-of-Flight (MALDI-TOF) Mass Spectrometry in the Clinical Microbiology Laboratory: A Report of the Association for Molecular Pathology.
Doern Christopher D et al. The Journal of molecular diagnostics : JMD 2016 Oct
Molecular Phylogenetics: Concepts for a Newcomer.
Ajawatanawong Pravech et al. Advances in biochemical engineering/biotechnology 2016 Oct
VSEARCH: a versatile open source tool for metagenomics.
Rognes Torbjørn et al. PeerJ 2016 e2584
The landscape of microbial phenotypic traits and associated genes
Brbic M, et al. Nucleic Acids Res, Oct 24, 2016.
World data centre for microorganisms: an information infrastructure to explore and utilize preserved microbial strains worldwide
Wu L, et al. Nucleic Acids Res, Oct 7, 2016.
The Candida Genome Database (CGD): incorporation of Assembly 22, systematic identifiers and visualization of high throughput sequencing data
Skrzypek MS, et al. Nucleic Acids Res, Oct 13, 2016.
EVOLUTION / ECOLOGY / POPULATIONS
Global Escherichia coli Sequence Type 131 Clade with blaCTX-M-27 Gene.
Matsumura Yasufumi et al. Emerging infectious diseases 2016 Nov (11) 1900-1907
A diverse group of small circular ssDNA viral genomes in human and non-human primate stools.
Ng Terry Fei Fan et al. Virus evolution 2015 (1) vev017
The complexity of human infected AIV H5N6 isolated from China.
Zhang Zhijie et al. BMC infectious diseases 2016 Oct (1) 600
Genetic Characterization of Spondweni and Zika Viruses and Susceptibility of Geographically Distinct Strains of Aedes aegypti, Aedes albopictus and Culex quinquefasciatus (Diptera: Culicidae) to Spondweni Virus.
Haddow Andrew D et al. PLoS neglected tropical diseases 2016 Oct (10) e0005083
Recent advances in malaria genomics and epigenomics.
Kirchner Sebastian et al. Genome medicine 2016 Sep (1) 92
PATHOGENICITY / ANTIMICROBIAL RESISTANCE
The role of IS26 in evolution of a derivative of the virulence plasmid of Salmonella enterica serovar Enteritidis which confers multiple drug resistance.
García Vanesa et al. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2016 Sep 246-249
Use of next generation sequence to investigate potential novel macrolide resistance mechanisms in a population of Moraxella catarrhalis isolates.
Liu Ya-Li et al. Scientific reports 2016 Oct 35711
Characterization of a novel blaIMP gene, blaIMP-58, using whole genome sequencing in a Pseudomonas putida isolate detected in Denmark.
Holmgaard Dennis Back et al. Diagnostic microbiology and infectious disease 2016 Oct
DETECTION / DIAGNOSIS
Use of matrix-assisted laser desorption/ionization-time of flight (MALDI-TOF) mass spectrometry for bacterial monitoring in routine analysis at a drinking water treatment plant.
Sala-Comorera Laura et al. International journal of hygiene and environmental health 2016 Oct (7 Pt A) 577-584
Effectiveness of weekly polymerase chain reaction-based open reading frame typing analysis of all newly isolated methicillin-resistant Staphylococcus aureus strains for controlling nosocomial infections.
Nakaie Kiyotaka et al. Journal of infection and chemotherapy : official journal of the Japan Society of Chemotherapy 2016 Nov (11) 733-737
Multiple-locus variable number of tandem repeat analysis as a tool for molecular epidemiology of botulism: The Italian experience.
Anniballi Fabrizio et al. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2016 Oct
Genotyping of circulating measles strains in Italy in 2010.
Baggieri Melissa et al. Annali dell'Istituto superiore di sanita 2014 (4) 345-50
Lassa and Ebola virus inhibitors identified using minigenome and recombinant virus reporter systems.
Welch Stephen R et al. Antiviral research 2016 Oct
EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION
Determining the cause of recurrent Clostridium difficile infection using whole genome sequencing.
Sim James Heng Chiak et al. Diagnostic microbiology and infectious disease 2016 Oct
Molecular Epidemiology of Colonizing and Infecting Isolates of Klebsiella pneumoniae.
Martin Rebekah M et al. mSphere (5)
Prospective use of whole genome sequencing (WGS) detected a multi-country outbreak of Salmonella Enteritidis.
Inns T et al. Epidemiology and infection 2016 Oct 1-10
Validation of genotype cluster investigations for Mycobacterium tuberculosis: application results for 44 clusters from four heterogeneous United States jurisdictions.
Teeter Larry D et al. BMC infectious diseases 2016 Oct (1) 594
HIV-1 transmission between MSM and heterosexuals, and increasing proportions of circulating recombinant forms in the Nordic Countries.
Esbjörnsson Joakim et al. Virus evolution 2016 Jan (1) vew010
Evidence of Local HIV Transmission in the African Community of King County, Washington.
Kerani Roxanne P et al. Journal of immigrant and minority health 2016 Jul
1970s and 'Patient 0' HIV-1 genomes illuminate early HIV/AIDS history in North America.
Worobey Michael et al. Nature 2016 Oct
ANTIMICROBIALS / VACCINES / INTERVENTIONS
Hepatitis B virus genetic diversity has minimal impact on sensitivity of the viral ribonuclease H to inhibitors.
Lu Gaofeng et al. Antiviral research 2016 Sep 24-30
Immunomic approaches for antigen discovery of human parasites.
Kassegne Kokouvi et al. Expert review of proteomics 2016 Oct
Towards the knowledge-based design of universal influenza epitope ensemble vaccines.
Sheikh Qamar M et al. Bioinformatics (Oxford, England) 2016 Jul
A replication-defective human cytomegalovirus vaccine for prevention of congenital infection
Wang D, et al. Sci Transl Med, Oct 26, 2016.
Cost-effective management of women with minor cervical lesions: Revisiting the application of HPV DNA testing.
Pedersen Kine et al. Gynecologic oncology 2016 Nov (2) 326-333
TLR4 genetic variation is associated with inflammatory responses in Gram-positive sepsis.
Chantratita N et al. Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases 2016 Sep
Deep sequencing reveals persistence of cell-associated mumps vaccine virus in chronic encephalitis.
Morfopoulou Sofia et al. Acta neuropathologica 2016 Oct
Comprehensive detection and identification of bacterial DNA in the blood of patients with sepsis and healthy volunteers using next-generation sequencing method - the observation of DNAemia.
Gosiewski T et al. European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology 2016 Oct
Molecular basis of human cerebral malaria development.
Wah Saw Thu et al. Tropical medicine and health 2016 33
Genome-wide association analysis identifies variation in vitamin D receptor and other host factors influencing the gut microbiota.
Wang Jun et al. Nature genetics 2016 Oct
Unusual sub-genus associations of faecal Prevotella and Bacteroides with specific dietary patterns.
De Filippis Francesca et al. Microbiome 2016 Oct (1) 57
Disclaimer: Articles listed in the Advanced Molecular Detection Clips are selected by the CDC Office of Public Health Genomics to provide current awareness of the scientific literature and news. Inclusion in the clips does not necessarily represent the views of the Centers for Disease Control and Prevention nor does it imply endorsement of the article's methods or findings. CDC and DHHS assume no responsibility for the factual accuracy of the items presented. The selection, omission, or content of items does not imply any endorsement or other position taken by CDC or DHHS. Opinion, findings and conclusions expressed by the original authors of items included in the Clips, or persons quoted therein, are strictly their own and are in no way meant to represent the opinion or views of CDC or DHHS. References to publications, news sources, and non-CDC Websites are provided solely for informational purposes and do not imply endorsement by CDC or DHHS.