Advanced Molecular Detection Clips Content (Published on 10/26/2023)
NEWS
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Giant sloths and woolly mammoths: Mining past creatures’ DNA for future antibiotics
Mast J. STAT, Oct 25, 2023. -
Inflammation in severe COVID linked to bad fungal microbiome
Prillaman M. Nature, Oct 23, 2023. -
The Virus Takes a Detour in its Evolutionary Arc
(blog post) Topol E. Ground Truths, Oct 25, 2023. -
Billions boost next-generation COVID-19 vaccine and treatments
Cohen J. Science, Oct 19, 2023. -
How the current bird flu strain evolved to be so deadly
Naddaf M. Nature, Oct 18, 2023. -
High-path avian flu spreads to Antarctic region
Schnirring L. CIDRAP, Oct 24, 2023. -
Tropical Parasite May Be Endemic in Texas — CDC identifies distinct genetic sequence for Leishmania mexicana in non-travelers
Putka S. MedPage Today, Oct 23, 2023.
EVENTS / TRAINING / WEB RESOURCES
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PHINDaccess Hackathons for COVID-19 and Host-Pathogen Interaction: Lessons Learned and Recommendations for Low- and Middle-Income Countries.
Kais Ghedira et al. Biomed Res Int 2023 10 6638714
CONCEPTS / COMMENTS
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Wastewater Collection and Sequencing as a Proactive Approach to Utilizing Threat Agnostic Biological Defense.
Zev Goldberg et al. Health Secur 2023 10 -
Key aspects defining the development and implementation of a regional genomic surveillance strategy for the Eastern Mediterranean Region.
Luke W Meredith et al. Influenza Other Respir Viruses 2023 10 (10) e13205 -
Filoviruses: Scientific Gaps and Prototype Pathogen Recommendation.
Lesley C Dupuy et al. J Infect Dis 2023 10 (Suppl 6) S446-S459
METHODS / TOOLS
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Comparison of metagenomic and targeted methods for sequencing human pathogenic viruses from wastewater.
Harry T Child et al. mBio 2023 10 e0146823 -
gcPathogen: a comprehensive genomic resource of human pathogens for public health.
Chongye Guo et al. Nucleic Acids Res 2023 10 -
Recovery of Complete Genome Sequences of Crimean-Congo Haemorrhagic Fever Virus (CCHFV) Directly from Clinical Samples: A Comparative Study Between Targeted Enrichment and Metagenomic Approaches.
Jake D'Addiego et al. J Virol Methods 2023 10 114833 -
Community Insights in Phylogenetic HIV Research: The CIPHR Project Protocol.
François Cholette et al. Glob Public Health 2023 10 (1) 2269435
EVOLUTION / ECOLOGY / POPULATIONS
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Genomic epidemiology and heterogeneity of Providencia and their bla-carrying plasmids.
Peng Wang et al. Emerg Microbes Infect 2023 10 2275596 -
Dispersal history and bidirectional human-fish host switching of invasive, hypervirulent Streptococcus agalactiae sequence type 283.
Daniel Schar et al. PLOS Glob Public Health 2023 10 (10) e0002454 -
Lineage replacement and evolution captured by 3 years of the United Kingdom Coronavirus (COVID-19) Infection Survey.
Katrina A Lythgoe et al. Proc Biol Sci 2023 10 (2009) 20231284 -
The episodic resurgence of highly pathogenic avian influenza H5 virus.
Ruopeng Xie et al. Nature 2023 10 (7984) 810-817 -
Expanding diversity of bunyaviruses identified in mosquitoes.
Yasuko Orba et al. Sci Rep 2023 10 (1) 18165 -
Genomic characterization and molecular evolution of human monkeypox viruses.
Patrícia Aline Gröhs Ferrareze et al. Arch Virol 2023 10 (11) 278 -
Strains of Anaplasma phagocytophilum from horses in Ohio are related to isolates from humans in the northeastern USA.
Rory C Chien et al. Microbiol Spectr 2023 10 e0263223
PATHOGENICITY / ANTIMICROBIAL RESISTANCE
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Genetic Characterization of Extensively Drug-Resistant Shigella sonnei Infections, Spain, 2021-2022.
Camille Jacqueline et al. Emerg Infect Dis 2023 10 (11) 2370-2373 -
Genotypic Evolution of Klebsiella pneumoniae Sequence Type 512 during Ceftazidime/Avibactam, Meropenem/Vaborbactam, and Cefiderocol Treatment, Italy.
Gabriele Arcari et al. Emerg Infect Dis 2023 10 (11) 2266-2274 -
Global Phylogeography and Genomic Epidemiology of Carbapenem-Resistant bla-Carrying Klebsiella pneumoniae Sequence Type 15 Lineage.
Yuye Wu et al. Emerg Infect Dis 2023 10 (11) 2246-2256 -
Clinically relevant mutations in the PhoR sensor kinase of host-adapted Mycobacterium abscessus isolates impact response to acidic pH and virulence.
Juan M Belardinelli et al. Microbiol Spectr 2023 10 e0158823 -
Genotype-Phenotype Characterization of Serial Mycobacterium tuberculosis Isolates in Bedaquiline-Resistant Tuberculosis.
Tyler S Brown et al. Clin Infect Dis 2023 10 -
Emergence of ciprofloxacin- and penicillin-resistant Neisseria meningitidis isolates in Japan between 2003 and 2020 and its genetic features.
Hideyuki Takahashi et al. Antimicrob Agents Chemother 2023 10 e0074423 -
High frequency of ofloxacin resistance patterns of M. leprae from India: An indication to revisit second line anti-leprosy treatment regimen.
Seema Chhabra et al. J Glob Antimicrob Resist 2023 10 -
Genetic variants linked to the phenotypic outcome of invasive disease and carriage of Neisseria meningitidis.
Lorraine Eriksson et al. Microb Genom 2023 10 (10) -
Emergence and rapid dissemination of highly resistant NDM-14-producing Klebsiella pneumoniae ST147, France, 2022.
Cécile Emeraud et al. Euro Surveill 2023 10 (42) -
Antigenicity and receptor affinity of SARS-CoV-2 BA.2.86 spike.
Qian Wang et al. Nature 2023 10 -
Trends in HIV-1 pretreatment drug resistance and HIV-1 variant dynamics among antiretroviral therapy-naive Ethiopians from 2003 to 2018: a pooled sequence analysis.
Mulugeta Kiros et al. Virol J 2023 10 (1) 243
DETECTION / DIAGNOSIS
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Regional reemergence of a SARS-CoV-2 Delta lineage amid an Omicron wave detected by wastewater sequencing.
Auke Haver et al. Sci Rep 2023 10 (1) 17870 -
Detection of SARS-CoV-2 in high-efficiency particulate air (HEPA) filters of low-cost air purifiers in community-based organizations.
Rachel D Clarke et al. Environ Monit Assess 2023 10 (11) 1320 -
Surveillance for rat hepatitis E in wastewater networks, Italy.
Andrea Palombieri et al. Microbiol Spectr 2023 10 e0267523 -
Monkeypox Virus in Wastewater Samples from Santiago Metropolitan Region, Chile.
Manuel Ampuero et al. Emerg Infect Dis 2023 10 (11) 2358-2361 -
Trends of Enterovirus D68 Concentrations in Wastewater, California, USA, February 2021-April 2023.
Alexandria B Boehm et al. Emerg Infect Dis 2023 10 (11) 2362-2365 -
The first established microsatellite markers to distinguish Candida orthopsilosis isolates and detection of a nosocomial outbreak in China.
Zhengyu Luo et al. J Clin Microbiol 2023 10 e0080623 -
Nanopore sequencing for malaria molecular surveillance: opportunities and challenges.
William L Hamilton et al. Trends Parasitol 2023 10
EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION
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Core genome multilocus sequence typing of Clostridioides difficile to investigate transmission in the hospital setting.
Paraskevas Filippidis et al. Eur J Clin Microbiol Infect Dis 2023 10 -
Human Salmonellosis Outbreak Linked to Salmonella Typhimurium Epidemic in Wild Songbirds, United States, 2020-2021.
Kane Patel et al. Emerg Infect Dis 2023 10 (11) 2298-2306 -
Outbreak of Pandoraea commovens Infections among Non-Cystic Fibrosis Intensive Care Patients, Germany, 2019-2021.
Tassilo Kruis et al. Emerg Infect Dis 2023 10 (11) 2229-2237 -
Transmission Dynamics and Rare Clustered Transmission Within an Urban University Population Before Widespread Vaccination.
Jacquelyn Turcinovic et al. J Infect Dis 2023 10 -
Genomic epidemiology reveals the dominance of Hennepin County in the transmission of SARS-CoV-2 in Minnesota from 2020 to 2022.
Matthew Scotch et al. mSphere 2023 10 (6) e0023223 -
Inferring Viral Transmission Pathways from Within-Host Variation.
Ivan O A Specht et al. medRxiv 2023 10 -
Antigenic drift and subtype interference shape A(H3N2) epidemic dynamics in the United States.
Amanda C Perofsky et al. medRxiv 2023 10 -
Community spread of a human monkeypox virus variant with a tecovirimat resistance-associated mutation.
Jacob M Garrigues et al. Antimicrob Agents Chemother 2023 10 (11) e0097223
ANTIMICROBIALS / VACCINES / INTERVENTIONS
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Design and Optimization of Novel Competitive, Non-peptidic, SARS-CoV-2 M Inhibitors.
Leon Jacobs et al. ACS Med Chem Lett 2023 10 (10) 1434-1440 -
mRNA vaccine against malaria effective in preclinical model.
Munyaradzi Makoni et al. Lancet Microbe 2023 10
HOST-MICROBE INTERACTIONS
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Machine-learning analysis of cross-study samples according to the gut microbiome in 12 infant cohorts.
Petri Vänni et al. mSystems 2023 10 e0036423 -
Inborn errors of immunity: an expanding universe of disease and genetic architecture.
Yemsratch T Akalu et al. Nat Rev Genet 2023 10


Disclaimer: Articles listed in the Advanced Molecular Detection Clips are selected by Public Health Genomics Branch to provide current awareness of the scientific literature and news. Inclusion in the clips does not necessarily represent the views of the Centers for Disease Control and Prevention nor does it imply endorsement of the article's methods or findings. CDC and DHHS assume no responsibility for the factual accuracy of the items presented. The selection, omission, or content of items does not imply any endorsement or other position taken by CDC or DHHS. Opinion, findings and conclusions expressed by the original authors of items included in the Clips, or persons quoted therein, are strictly their own and are in no way meant to represent the opinion or views of CDC or DHHS. References to publications, news sources, and non-CDC Websites are provided solely for informational purposes and do not imply endorsement by CDC or DHHS.
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