Advanced Molecular Detection Clips Content (Published on 10/23/2024)
NEWS
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The end of smallpox was ... the beginning for mpox
Emanuel G. NPR, Oct 8, 2024. -
Genomic surveillance tracks RSV evolution, identifies mutations in Minnesota
Van Beusekom M. CIDRAP, Oct 22, 2024. -
WHO lauds Rwanda's Marburg response as country shares initial genetic findings
Schnirring L. CIDRAP, Oct 21, 2024. -
Avian flu biomarker was circulating in Texas wastewater weeks before outbreaks in cattle
Van Beusekom M. CIDRAP, Oct 21, 2024. -
Chickenpox, shingles, Alzheimer’s? Evidence mounts for a viral cause of dementia
Molteni M. STAT, Oct 18, 2024.
CONCEPTS / COMMENTS
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Identifying factors that influence the use of pathogen genomics in Australia and New Zealand: A protocol
Ong JD, et al. Front Public Health 2024;12:1426318. -
India should invest in the expansion of genomic epidemiology for vector-borne diseases filariasis, malaria and visceral leishmaniasis that are targeted for elimination.
Nandini Singh et al. IJID Reg 2024 10 100453
METHODS / TOOLS
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EnteroBase in 2025: exploring the genomic epidemiology of bacterial pathogens.
Nigel P Dyer et al. Nucleic Acids Res 2024 10 -
AMRColab - a user-friendly antimicrobial resistance detection and visualization tool.
Su Datt Lam et al. Microb Genom 2024 10 (10) -
Sequence-matching adapter trimmers generate consistent quality and assembly metrics for Illumina sequencing of RNA viruses.
Grace Nabakooza et al. BMC Res Notes 2024 10 (1) 308 -
Applying nanopore sequencing technology in Paracoccidioides sp.: a high-quality DNA isolation method for next-generation genomic studies.
Melina Noelia Lorenzini Campos et al. Microb Genom 2024 10 (10)
EVOLUTION / ECOLOGY / POPULATIONS
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Genome-scale analysis of Mycobacterium avium complex isolates from Portugal reveals extensive genetic diversity.
Sofia Carneiro et al. Infect Genet Evol 2024 10 105682 -
Unusual G3P[10] bat-like rotavirus strains detected in children with acute gastroenteritis in Thailand.
Nutthawadee Jampanil et al. J Med Virol 2024 10 (10) e70014 -
Completed genome segments of Maciel, Lechiguanas, and Laguna Negra orthohantaviruses.
Elizabeth Shedroff et al. Microbiol Resour Announc 2024 10 e0044124 -
Genetic sequencing analysis of monkeypox virus clade I in Republic of the Congo: a cross-sectional, descriptive study.
Claude Kwe Yinda et al. Lancet 2024 10 -
Features that matter: Evolutionary signatures can predict viral transmission routes.
Maya Wardeh et al. PLoS Pathog 2024 10 (10) e1012629
PATHOGENICITY / ANTIMICROBIAL RESISTANCE
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Emergence and evolution of mosaic penA-60 and penA-237 alleles in a Neisseria gonorrhoeae core genogroup that was historically susceptible to extended spectrum cephalosporins.
Jesse C Thomas Iv et al. Front Microbiol 2024 10 1401303 -
Sentinel Surveillance reveals phylogenetic diversity and detection of linear plasmids harboring vanA and optrA among enterococci collected in the United States.
Alyssa G Kent et al. Antimicrob Agents Chemother 2024 10 e0059124 -
Whole-genome sequencing of toxigenic Clostridioides difficile reveals multidrug resistance and virulence genes in strains of environmental and animal origin.
Daniela Tercero-Guerrero et al. BMC Vet Res 2024 10 (1) 479 -
Frameshift Mutations in Genes Encoding PBP3 and PBP4 Trigger an Unusual, Extreme β-Lactam Resistance Phenotype in Burkholderia multivorans.
Maria F Mojica et al. ACS Infect Dis 2024 10 -
Molecular mechanisms of re-emerging chloramphenicol susceptibility in extended-spectrum beta-lactamase-producing Enterobacterales.
Fabrice E Graf et al. Nat Commun 2024 10 (1) 9019 -
Re-emergence of Oropouche virus between 2023 and 2024 in Brazil: an observational epidemiological study.
Gabriel C Scachetti et al. Lancet Infect Dis 2024 10
DETECTION / DIAGNOSIS
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Long-term genomic surveillance reveals the circulation of clinically significant Salmonella in lymph nodes and beef trimmings from slaughter cattle from a Mexican feedlot.
Enrique Jesús Delgado-Suárez et al. PLoS One 2024 10 (10) e0312275 -
Comparative study of pathogen detection methods for central nervous system infections: laboratory testing of tuberculous meningitis.
Zengchen Liu et al. BMC Infect Dis 2024 10 (1) 1172 -
SARS-CoV-2 molecular surveillance of migrant populations arriving to Italy via the Mediterranean Sea: lessons learnt.
Walter Mazzucco et al. Epidemiol Prev 2024 10 (4-5) 69-74 -
Liquid saliva-based Raman spectroscopy device with on-board machine learning detects COVID-19 infection in real-time.
Katherine J I Ember et al. Analyst 2024 10 -
A Strategic Framework of SARS-CoV-2 Genomic Surveillance in Bangladesh.
Mohammad Jubair et al. Influenza Other Respir Viruses 2024 10 (10) e70019 -
Exploring hepatitis A dynamics in Israel, 2019-2022.
Yael Gozlan et al. Sci Total Environ 2024 10 176861 -
Mpox genomics in outbreak control: challenges and limitations.
Kathryn Edenborough et al. Lancet Microbe 2024 10 100999 -
Diagnostic and surveillance testing capability for mpox in the EU/EEA, September 2024.
Nina Lagerqvist et al. Euro Surveill 2024 10 (42) -
Next-Generation Sequencing Methods for Near-Real-Time Molecular Epidemiology of HIV and HCV.
Bethany A Horsburgh et al. Rev Med Virol 2024 10 (6) e70001 -
Genomic Epidemiology of Human Respiratory Syncytial Virus, Minnesota, USA, July 2023–February 2024
Evans D, et al. Emerg Infect Dis, Oct 20, 2024. -
Wastewater Surveillance for Norovirus, California, USA
Yu AT, et al. Emerg Infect Dis, Oct 29, 2024. -
Genotyping methods to distinguish Plasmodium falciparum recrudescence from new infection for the assessment of antimalarial drug efficacy: an observational, single-centre, comparison study.
Annina Schnoz et al. Lancet Microbe 2024 10 100914
EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION
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Monkeypox Clade Ib virus introduction into Burundi: first findings, July to mid-August 2024.
Néhémie Nzoyikorera et al. Euro Surveill 2024 10 (42) -
Notes from the Field: Mpox Cluster Caused by Tecovirimat-Resistant Monkeypox Virus - Five States, October 2023-February 2024.
Crystal M Gigante et al. MMWR Morb Mortal Wkly Rep 2024 10 (40) 903-905 -
Investigation and successful control of a Candida auris outbreak at a tertiary health care facility in Kenya
Ombajo, L. A., et al. IJID Regions 2024 13 -
Crimean-Congo hemorrhagic fever cases diagnosed during an outbreak of Sudan virus disease in Uganda, 2022-23.
Stephen Balinandi et al. PLoS Negl Trop Dis 2024 10 (10) e0012595 -
The Synergy of Machine Learning and Epidemiology in Addressing Carbapenem Resistance: A Comprehensive Review
Sakagianni A, et al. Antibiotics, Oct 21, 2024. -
Epidemiology of human metapneumovirus in Taiwan from 2013 to 2023.
Su-Lin Yang et al. Arch Virol 2024 10 (11) 229
ANTIMICROBIALS / VACCINES / INTERVENTIONS
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Randomized Immunogenicity Trial Comparing 2019-2020 Recombinant and Egg-Based Influenza Vaccines among Frequently Vaccinated Healthcare Personnel in Israel.
Ashley L Fowlkes et al. Int J Infect Dis 2024 10 107260
HOST-MICROBE INTERACTIONS
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MHConstructor: a high-throughput, haplotype-informed solution to the MHC assembly challenge.
Kristen J Wade et al. Genome Biol 2024 10 (1) 274
Disclaimer: Articles listed in the Advanced Molecular Detection Clips are selected by Public Health Genomics Branch to provide current awareness of the scientific literature and news. Inclusion in the clips does not necessarily represent the views of the Centers for Disease Control and Prevention nor does it imply endorsement of the article's methods or findings. CDC and DHHS assume no responsibility for the factual accuracy of the items presented. The selection, omission, or content of items does not imply any endorsement or other position taken by CDC or DHHS. Opinion, findings and conclusions expressed by the original authors of items included in the Clips, or persons quoted therein, are strictly their own and are in no way meant to represent the opinion or views of CDC or DHHS. References to publications, news sources, and non-CDC Websites are provided solely for informational purposes and do not imply endorsement by CDC or DHHS.
- Page last reviewed:Feb 1, 2024
- Page last updated:Jan 9, 2025