Advanced Molecular Detection Clips Content (Published on 10/20/2016)
Bacterial Species Abundance, Strain-Level Genomic Variation Identified by New Metagenomic Pipeline
GenomeWeb, Oct 18, 2016.
Common STD May Have Come from Neanderthals
Grant B. The Scientist, Oct 20, 2016.
Scientists think the common cold may at last be beatable
Zimmer C. STAT, Oct 21, 2016.
NBC Plans Bio-Terror Drama C.R.I.S.P.R. with Jennifer Lopez
Henry BA. The Scientist, Oct 19, 2016.
CONCEPTS / COMMENTS
From SARS to MERS: evidence and speculation.
Gao Hainv et al. Frontiers of medicine 2016 Oct
The tip of the iceberg: challenges of accessing hospital electronic health record data for biological data mining.
Denaxas Spiros C et al. BioData mining 2016 29
Genia Publishes Polymerase-to-pore docking scheme
(blog post) Robison K. Omics! Omics!, Oct 19, 2016.
METHODS / TOOLS
Design and characterization of a nanopore-coupled polymerase for single-molecule DNA sequencing by synthesis on an electrode array.
Stranges P Benjamin et al. Proceedings of the National Academy of Sciences of the United States of America 2016 Oct
An integrated metagenomics pipeline for strain profiling reveals novel patterns of bacterial transmission and biogeography
Nayfach S. Genome Med, Oct 18, 2016.
A comparative study of metagenomics analysis pipelines at the species level
Teo YV, Neretti N. bioRxiv, Oct 15, 2016.
EVOLUTION / ECOLOGY / POPULATIONS
Klebsiella pneumoniae Population Genomics and Antimicrobial-Resistant Clones.
Wyres Kelly L et al. Trends in microbiology 2016 Oct
More than 50% of Clostridium difficile Isolates from Pet Dogs in Flagstaff, USA, Carry Toxigenic Genotypes.
Stone Nathan E et al. PloS one 2016 (10) e0164504
DNA from Dust: Comparative Genomics of Large DNA Viruses in Field Surveillance Samples.
Pandey Utsav et al. mSphere (5)
The evolution of Ebola virus: Insights from the 2013-2016 epidemic.
Holmes Edward C et al. Nature 2016 Oct (7624) 193-200
Evolution of codon usage in Zika virus genomes is host and vector specific.
Butt Azeem Mehmood et al. Emerging microbes & infections 2016 Oct (10) e107
How Did Zika Virus Emerge in the Pacific Islands and Latin America?
Pettersson John H-O et al. mBio 2016 Oct (5)
Genome-scale phylodynamics and evolution analysis of global H7N7 influenza viruses.
Wei Kaifa et al. Veterinary microbiology 2016 Sep 83-92
PATHOGENICITY / ANTIMICROBIAL RESISTANCE
Deciphering the resistome of the widespread P. aeruginosa ST175 international high-risk clone through whole genome sequencing.
Cabot Gabriel et al. Antimicrobial agents and chemotherapy 2016 Oct
Virulence, Antimicrobial Resistance Properties and Phylogenetic Background of Non-H7 Enteropathogenic Escherichia coli O157.
Ferdous Mithila et al. Frontiers in microbiology 2016 1540
The detection of fosfomycin resistance genes in Enterobacteriaceae from pets and their owners.
Yao Hong et al. Veterinary microbiology 2016 Sep 67-71
DETECTION / DIAGNOSIS
Uncommonly isolated clinical Pseudomonas: identification and phylogenetic assignation.
Mulet M et al. European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology 2016 Oct
Molecular Assay Validation Using Genomic Sequence Databases.
Dekker John P et al. Journal of clinical microbiology 2016 Oct
Exploiting bacterial whole-genome sequencing data for the evaluation of diagnostic assays: Campylobacter species identification as a case study.
Jansen van Rensburg Melissa J et al. Journal of clinical microbiology 2016 Oct
Identification of Burkholderia and Uncommon Glucose Non-fermenting Gram-Negative Bacilli Isolated from Patients with Cystic Fibrosis using Matrix-Assisted Laser Desorption Ionization-Time of Flight Mass Spectrometry (MALDI-TOF MS).
Plongla Rongpong et al. Journal of clinical microbiology 2016 Oct
Time until emergence of HIV test reactivity following infection with HIV-1: Implications for interpreting test results and retesting after exposure.
Delaney Kevin P et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2016 Oct
The real-time quaking-induced conversion assay for detection of human prion disease and study of other protein misfolding diseases.
Schmitz Matthias et al. Nature protocols 2016 Nov (11) 2233-2242
EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION
The Lactococcus genus as a potential emerging mastitis pathogen group: A report on an outbreak investigation.
Rodrigues M X et al. Journal of dairy science 2016 Oct
Import and spread of extended-spectrum β-lactamase-producing Enterobacteriaceae by international travellers (COMBAT study): a prospective, multicentre cohort study.
Arcilla Maris S et al. The Lancet. Infectious diseases 2016 Oct
Role for migratory wild birds in the global spread of avian influenza H5N8.
et al. Science (New York, N.Y.) 2016 Oct (6309) 213-217
ANTIMICROBIALS / VACCINES / INTERVENTIONS
Xpert MTB/RIF Assay shows faster clearance of M. tuberculosis DNA with higher rifapentine exposure.
Jayakumar A et al. Journal of clinical microbiology 2016 Oct
HOMINID: A framework for identifying associations between host genetic variation and microbiome composition
Lynch J, et al. bioRxiv, Oct 17, 2016.
HPV16 variants distribution in invasive cancers of the cervix, vulva, vagina, penis, and anus.
Nicolás-Párraga Sara et al. Cancer medicine 2016 Sep
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