Advanced Molecular Detection Clips Content (Published on 10/15/2020)
NEWS
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Africa Pathogen Genomics Initiative Launches With $100M Investment
Johnson M. GenomeWeb, Oct 12, 2020. -
COVID-19: examining theories for Africa's low death rates
Marsh K, Alobo M. The Conversation, Oct 7, 2020. -
Unique COVID-19 Phenotype Emerges Through Multi-Omic Patient Analysis
GenomeWeb, Oct 9, 2020. -
Scientists have a powerful new tool for controlling the coronavirus: Its own genetic code.
Dennis B, et al. Washington Post, Oct 13, 2020. -
Found: genes that sway the course of the coronavirus
Kaiser J. Science, Oct 13, 2020. -
Early approval of a COVID-19 vaccine could stymie the hunt for better ones
Cohen J. Science, Oct 14, 2020. -
FDA Relaxes Rules for Flu, RSV Molecular Tests During Coronavirus Health Emergency
GenomeWeb, Oct 13, 2020.
EVENTS / TRAINING / WEB RESOURCES
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Methodology Minute: A Machine Learning Primer for Infection Prevention and Control.
Wiemken Timothy L et al. American journal of infection control 2020 Oct
POLICY
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National Action Plan for Combating Antibiotic-Resistant Bacteria, 2020-2025
Office of The Assistant Secretary for Planning and Evaluation, DHHS, Oct 9, 2020.
CONCEPTS / COMMENTS
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MERS-CoV in Africa-an enigma with relevance to COVID-19.
Perlman Stanley et al. The Lancet. Infectious diseases 2020 Oct -
Preparedness needs research: How fundamental science and international collaboration accelerated the response to COVID-19.
Kinsella Cormac M et al. PLoS pathogens 2020 10 (10) e1008902 -
Cognition all the way down
Levin M, Dennett DC. Aeon, Oct 13, 2020.
METHODS / TOOLS
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Single-virus genomics and beyond.
Martínez Martínez Joaquín et al. Nature reviews. Microbiology 2020 Oct -
ViruSurf: an integrated database to investigate viral sequences.
Canakoglu Arif et al. Nucleic acids research 2020 Oct -
Estimating effective population size changes from preferentially sampled genetic sequences.
Karcher Michael D et al. PLoS computational biology 2020 Oct (10) e1007774 -
Genome Complexity Browser: Visualization and quantification of genome variability.
Manolov Alexander et al. PLoS computational biology 2020 Oct (10) e1008222 -
Coronavirus3D: 3D structural visualization of COVID-19 genomic divergence.
Sedova Mayya et al. Bioinformatics (Oxford, England) 2020 08 (15) 4360-4362 -
A coronavirus online analysis platform at the National Genomics Data Center.
Gong Zheng et al. Zoological research 2020 Oct 1-6 -
GESS: a database of global evaluation of SARS-CoV-2/hCoV-19 sequences.
Fang Shuyi et al. Nucleic acids research 2020 Oct -
Network Graph Representation of COVID-19 Scientific Publications to Aid Knowledge Discovery
Cernile G, et al. medRxiv, Oct 14, 2020.
EVOLUTION / ECOLOGY / POPULATIONS
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Changed epidemiology of anthrax and molecular characteristics of B. anthracis in Inner Mongolia Autonomous Region, China.
Hai Yan et al. Transboundary and emerging diseases 2020 Oct -
Characterization of Mobile Genetic Elements Using Long-Read Sequencing for Tracking Listeria monocytogenes from Food Processing Environments.
Kwon Hee Jin et al. Pathogens (Basel, Switzerland) 2020 Oct (10) -
Evolutionary history and current distribution of the West Mediterranean lineage of Brucella melitensis in Italy.
Janowicz Anna et al. Microbial genomics 2020 Oct -
Variations in SARS-CoV-2 Spike Protein Cell Epitopes and Glycosylation Profiles During Global Transmission Course of COVID-19.
Xu Wenxin et al. Frontiers in immunology 2020 565278 -
Non-synonymous Mutations of SARS-CoV-2 Leads Epitope Loss and Segregates its Variants.
Gupta Aayatti Mallick et al. Microbes and infection 2020 Oct -
Assessing the SARS-CoV-2 threat to wildlife: Potential risk to a broad range of mammals.
Martínez-Hernández Fernando et al. Perspectives in ecology and conservation 2020 Oct -
Phylogeographic diversity and hybrid zone of Hantaan orthohantavirus collected in Gangwon Province, Republic of Korea.
Lee Geum-Young et al. PLoS neglected tropical diseases 2020 Oct (10) e0008714 -
Whole genome sequencing of Plasmodium vivax isolates reveals frequent sequence and structural polymorphisms in erythrocyte binding genes.
Ford Anthony et al. PLoS neglected tropical diseases 2020 Oct (10) e0008234
PATHOGENICITY / ANTIMICROBIAL RESISTANCE
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Genomics of Ocular Chlamydia trachomatis after 5 years of SAFE interventions for trachoma in Amhara, Ethiopia.
Pickering Harry et al. The Journal of infectious diseases 2020 Oct -
Bacterial genome-wide association study of hyper-virulent pneumococcal serotype 1 identifies genetic variation associated with neurotropism.
Chaguza Chrispin et al. Communications biology 2020 Oct (1) 559 -
High-throughput mapping of the phage resistance landscape in E. coli.
Mutalik Vivek K et al. PLoS biology 2020 Oct (10) e3000877 -
Swine acute diarrhea syndrome coronavirus replication in primary human cells reveals potential susceptibility to infection.
Edwards Caitlin E et al. Proceedings of the National Academy of Sciences of the United States of America 2020 Oct -
Emergence of highly pathogenic H5N2 and H7N1 influenza A viruses from low pathogenic precursors by serial passage in ovo.
Laleye Agnes Tinuke et al. PloS one 2020 (10) e0240290
DETECTION / DIAGNOSIS
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Sensitive identification of bacterial DNA in clinical specimens by broad range 16S rRNA enrichment.
Barrett Sara Rassoulian et al. Journal of clinical microbiology 2020 Oct -
Comparison of conventional molecular and whole-genome sequencing methods for subtyping Salmonella enterica serovar Enteritidis strains from Tunisia.
Ksibi Boutheina et al. European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology 2020 Oct -
A combined approach of MALDI-TOF Mass Spectrometry and multivariate analysis as a potential tool for the detection of SARS-CoV-2 virus in nasopharyngeal swabs.
Rocca María Florencia et al. Journal of virological methods 2020 Oct 113991 -
Clinical impact of molecular point-of-care testing for suspected COVID-19 in hospital (COV-19POC): a prospective, interventional, non-randomised, controlled study
Brendish NJ, et al. Lancet Resp Med, Oct 8, 2020. -
Rapid, sensitive and specific SARS coronavirus-2 detection: a multi-center comparison between standard qRT-PCR and CRISPR based DETECTR.
Brandsma Eelke et al. The Journal of infectious diseases 2020 Oct -
One year variations of viruses in influent and effluent water at a wastewater plant - assessed by qPCR and metagenomics.
Wang Hao et al. Applied and environmental microbiology 2020 Oct -
Comparison and clinical validation of qPCR assays targeting Leishmania 18S rDNA and HSP70 genes in patients with American Tegumentary Leishmaniasis.
Filgueira Camila Patricio Braga et al. PLoS neglected tropical diseases 2020 Oct (10) e0008750
EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION
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A Nosocomial Respiratory Infection Outbreak of Carbapenem-Resistant Escherichia coli ST131 With Multiple Transmissible bla null Carrying Plasmids.
Gong Lin et al. Frontiers in microbiology 2020 2068 -
Whole-genome sequencing to investigate two concurrent outbreaks of Salmonella Enteritidis in South Africa, 2018.
Smith Anthony M et al. Journal of medical microbiology 2020 Oct -
Detecting national human enteric disease outbreaks linked to animal contact in the United States of America.
Nichols M et al. Revue scientifique et technique (International Office of Epizootics) 2020 Aug (2) 471-480 -
Prolonged outbreak of multidrug-resistant Shigella sonnei harbouring bla CTX-M-27 in Victoria, Australia.
Ingle Danielle J et al. Antimicrobial agents and chemotherapy 2020 Oct -
Reinfection of SARS-CoV-2 in an immunocompromised patient: a case report.
Mulder Marlies et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2020 Oct -
Sewage as a Possible Transmission Vehicle During a Coronavirus Disease 2019 Outbreak in a Densely populated Community: Guangzhou, China, April 2020.
Yuan Jun et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2020 Oct -
Genomic evidence for reinfection with SARS-CoV-2: a case study
Tillett RL, et al. Lancet Infect Dis, Oct 12, 2020. -
SARS-CoV-2 sequencing reveals rapid transmission from college student clusters resulting in morbidity and deaths in vulnerable populations
Richmond CS, et al. medRxiv, Oct 14, 2020. -
Global and regional dispersal patterns of hepatitis B virus genotype E from and in Africa: A full-genome molecular analysis.
Ingasia Luicer Anne Olubayo et al. PloS one 2020 (10) e0240375 -
The Seattle Flu Study: a multiarm community-based prospective study protocol for assessing influenza prevalence, transmission and genomic epidemiology.
Chu Helen Y et al. BMJ open 2020 Oct (10) e037295 -
Long-lasting Cluster of Nosocomial Pneumonia with A Single Pneumocystis Jirovecii Genotype Involving Different Organ Allograft Recipients.
Hosseini-Moghaddam Seyed M et al. Clinical transplantation 2020 Oct e14108 -
Isolation, genetic and immunohistochemical identification of Toxoplasma gondii from human placenta in a large toxoplasmosis outbreak in southern Brazil, 2018.
Pinto-Ferreira Fernanda et al. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2020 Oct 104589
HOST-MICROBE INTERACTIONS
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Longitudinal high-throughput TCR repertoire profiling reveals the dynamics of T cell memory formation after mild COVID-19 infection
Minervina AA, et al. bioRxiv, Oct 1, 2020. -
Genetic mechanisms of critical illness in Covid-19
Pairo-Castineira E, et al. medRxiv, Sep 25, 2020. -
Genome-Wide Asymptomatic B-Cell, CD4 + and CD8 + T-Cell Epitopes, that are Highly Conserved Between Human and Animal Coronaviruses, Identified from SARS-CoV-2 as Immune Targets for Pre-Emptive Pan-Coronavirus Vaccines.
Prakash Swayam et al. bioRxiv : the preprint server for biology 2020 Sep -
Genomewide Association Study of Severe Covid-19 with Respiratory Failure
The Severe COVID-19 GWAS Group, New Engl J Med, Oct 15, 2020. -
Comparative host-coronavirus protein interaction networks reveal pan-viral disease mechanisms
Gordon GE, et al. Science, Oct 15, 2020.
Disclaimer: Articles listed in the Advanced Molecular Detection Clips are selected by Public Health Genomics Branch to provide current awareness of the scientific literature and news. Inclusion in the clips does not necessarily represent the views of the Centers for Disease Control and Prevention nor does it imply endorsement of the article's methods or findings. CDC and DHHS assume no responsibility for the factual accuracy of the items presented. The selection, omission, or content of items does not imply any endorsement or other position taken by CDC or DHHS. Opinion, findings and conclusions expressed by the original authors of items included in the Clips, or persons quoted therein, are strictly their own and are in no way meant to represent the opinion or views of CDC or DHHS. References to publications, news sources, and non-CDC Websites are provided solely for informational purposes and do not imply endorsement by CDC or DHHS.
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- Page last updated:Mar 28, 2024
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