Advanced Molecular Detection Clips Content (Published on 10/12/2017)
Bacterial Genome Analysis Highlights Horizontal Gene Transfer, Recombination Hotspots
GenomeWeb, Oct 10, 2017.
Study Identifies Crucial Characteristic of High-Risk HPV
Cancer Currents Blog, NCI, Oct 5, 2017.
FDA approves test to screen blood donations for Zika virus
Freeman L. USA Today, Oct 6, 2017.
H7N9 Flu Changes Worry Experts
Smith M. MedPage Today, Oct 5, 2017.
Parasite Plagues Subset of Iraq War Vets
Dotinga R. MedPage Today, Oct 9, 2017.
Short sleeves reduce risk for pathogen transmission
Healio, Oct 6, 2017.
Did 'Nutcracker Man' Give Us Genital Herpes?
Choi CQ. LiveScience, Oct 2, 2017.
EVENTS / TRAINING / WEB RESOURCES
Genetics and Evolution of Infectious Diseases, 2nd ed.
(book review) Tibayrenc M, ed. Reviewed by Moss WJ. Clin Infect Dis, Oct 8, 2017.
Genome Workbench v2.12.5
(announcement) NCBI, Oct 10, 2017.
CONCEPTS / COMMENTS
Understanding drug resistance will improve the treatment of bacterial infections
Piddock LJ, et al. Nat Rev Microbiol, Oct 12, 2017.
Prediction of antibiotic resistance: time for a new preclinical paradigm?
Sommer Morten O A et al. Nature reviews. Microbiology 2017 Jul
Diagnosing antimicrobial resistance
Burnham CD, et al. Nat Rev Microbiol, Oct 12, 2017.
The Critical Role of Biomedical Research in Pandemic Preparedness.
Marston Hilary D et al. JAMA 2017 Oct
Analysing published global Ebola Virus Disease research using social network analysis.
Hagel Christiane et al. PLoS neglected tropical diseases 2017 Oct (10) e0005747
Ten simple rules in considering a career in academia versus government.
Bourne Philip E et al. PLoS computational biology 2017 Oct (10) e1005729
Viciana E. Nat Rev Microbiol, Oct 3, 2017.
METHODS / TOOLS
Evidence-Based Design and Evaluation of a Whole Genome Sequencing Clinical Report for the Reference Microbiology Laboratory
A Crisan et al. BioRxIV, Oct 6, 2017.
Quantifying Transmission Heterogeneity Using Both Pathogen Phylogenies and Incidence Time Series.
Li Lucy M et al. Molecular biology and evolution 2017 Jul
Collaborative study to establish World Health Organization international reference reagents for dengue virus Types 1 to 4 RNA for use in nucleic acid testing.
Añez Germán et al. Transfusion 2017 Aug (8) 1977-1987
PCR and Omics Based Techniques to Study the Diversity, Ecology and Biology of Anaerobic Fungi: Insights, Challenges and Opportunities.
Edwards Joan E et al. Frontiers in microbiology 2017 1657
EVOLUTION / ECOLOGY / POPULATIONS
Francisella-Like Endosymbiont Detected in Haemaphysalis Ticks (Acari: Ixodidae) From the Republic of Korea.
Takhampunya Ratree et al. Journal of medical entomology 2017 Jul
Fatal Outbreak in Tonkean Macaques Caused by Possibly Novel Orthopoxvirus, Italy, January 2015(1).
Cardeti Giusy et al. Emerging infectious diseases 2017 Dec (12)
Emergent Lineages of Mumps Virus Suggest the Need for a Polyvalent Vaccine.
MayMay Meghan et al. International journal of infectious diseases : IJID : official publication of the International Society for Infectious Diseases 2017 Oct
Full genomic characterization of California serogroup viruses, genus Orthobunyavirus, family Peribunyaviridae including phylogenetic relationships.
Hughes Holly R et al. Virology 2017 Oct 201-210
From discovery to spread: The evolution and phylogeny of Getah virus.
Li Yuan-Yuan et al. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2017 Aug 48-55
The creation and selection of mutations resistant to a gene drive over multiple generations in the malaria mosquito.
Hammond Andrew M et al. PLoS genetics 2017 Oct (10) e1007039
Inter-individual and intragenomic variations in the ITS region of Clonorchis sinensis (Trematoda: Opisthorchiidae) from Russia and Vietnam.
Tatonova Yulia V et al. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2017 Oct
PATHOGENICITY / ANTIMICROBIAL RESISTANCE
Emergence and clonal spread of colistin resistance due to multiple mutational mechanisms in carbapenemase-producing Klebsiella pneumoniae in London.
Otter Jonathan A et al. Scientific reports 2017 Oct (1) 12711
Molecular characterization of carbapenemase-producing Pseudomonas aeruginosa of Czech origin: evidence for clonal spread of extensively resistant ST357 expressing IMP-7 metallo-β-lactamase.
Papagiannitsis Costas C et al. Antimicrobial agents and chemotherapy 2017 Oct
Trends in Drug Resistance Prevalence, HIV-1 Variants and Clinical Status in HIV-1-Infected Pediatric Population in Madrid: 1993-2015 Analysis.
Rojas Sánchez Patricia et al. The Pediatric infectious disease journal 2017 Oct
DETECTION / DIAGNOSIS
Targeting the Kingella Kingae groEL Gene is a Reliable Method for the Molecular Diagnosis of K. Kingae Infection and Carriage.
El Houmami Nawal et al. Journal of paediatrics and child health 2017 Oct (10) 1030-1031
Genetic heterogeneity among <i>Vibrio alginolyticus</i> strains and design of a PCR-based identification method using <i>gyrB</i> gene sequence.
Bunpa Supansa et al. Canadian journal of microbiology 2017 Oct
Single mutation in the matrix gene of seasonal influenza A viruses critically affects the performance of diagnostic molecular assay.
Duh Darja et al. Journal of virological methods 2017 Oct
Quantitative characterization of hepatitis delta virus genome edition by next-generation sequencing.
Sopena Sara et al. Virus research 2017 Oct
Chikungunya Detection during Dengue Outbreak in Sumatra, Indonesia: Clinical Manifestations and Virological Profile.
Sasmono R Tedjo et al. The American journal of tropical medicine and hygiene 2017 Sep
Multiplex RT-PCR for Simultaneous Surveillance of Influenza A and B Viruses.
Zhou Bin et al. Journal of clinical microbiology 2017 Oct
Development and evaluation of one-step multiplex real-time RT-PCR assay for simultaneous detection of Zika virus and Chikungunya virus.
Liu Si-Qing et al. Journal of medical virology 2017 Oct
Rapid detection of Powassan virus in a patient with encephalitis by metagenomic sequencing.
Piantadosi Anne et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2017 Sep
Performance of Targeted Fungal Sequencing for Culture-Independent Diagnosis of Invasive Fungal Disease.
Gomez Carlos A et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2017 Aug
Next-generation ELISA diagnostic assay for Chagas Disease based on the combination of short peptidic epitopes.
Mucci Juan et al. PLoS neglected tropical diseases 2017 Oct (10) e0005972
Application of a loop-mediated isothermal amplification (LAMP) assay targeting cox1 gene for the detection of Clonorchis sinensis in human fecal samples.
Rahman S M Mazidur et al. PLoS neglected tropical diseases 2017 Oct (10) e0005995
EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION
Application of whole genome sequence analysis to the study of Mycobacterium tuberculosis in Nunavut, Canada.
Tyler Andrea D et al. PloS one 2017 (10) e0185656
Epidemic dispersion of HIV and HCV in a population of co-infected Romanian injecting drug users.
Paraschiv Simona et al. PloS one 2017 (10) e0185866
Next-generation sequencing as a tool for the study of Porcine reproductive and respiratory syndrome virus (PRRSV) macro- and micro- molecular epidemiology.
Cortey M et al. Veterinary microbiology 2017 Sep 5-12
Genomic Dissection of an Icelandic Epidemic of Respiratory Disease in Horses and Associated Zoonotic Cases.
Björnsdóttir Sigríður et al. mBio 2017 Aug (4)
ANTIMICROBIALS / VACCINES / INTERVENTIONS
A Population-Based Assessment of the Impact of 7- and 13-Valent Pneumococcal Conjugate Vaccines on Macrolide-Resistant Invasive Pneumococcal Disease: Emergence and Decline of Streptococcus pneumoniae Serotype 19A (CC320) With Dual Macrolide Resistance Mechanisms.
Schroeder Max R et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2017 Sep (6) 990-998
Acute Retinal Necrosis caused by the zoster vaccine virus.
Heath Gregory et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2017 Aug
Prolonged Excretion of Poliovirus among Individuals with Primary Immunodeficiency Disorder: An Analysis of the World Health Organization Registry.
Macklin Grace et al. Frontiers in immunology 2017 1103
Associations between an IgG3 polymorphism in the binding domain for FcRn, transplacental transfer of malaria-specific IgG3, and protection against Plasmodium falciparum malaria during infancy: A birth cohort study in Benin.
Dechavanne Celia et al. PLoS medicine 2017 Oct (10) e1002403
Network analysis of the hominin origin of Herpes Simplex virus 2 from fossil data.
Underdown Simon J et al. Virus evolution 2017 Jul (2) vex026
The gastric microbiome, its interaction with Helicobacter pylori, and its potential role in the progression to stomach cancer.
Noto Jennifer M et al. PLoS pathogens 2017 Oct (10) e1006573
Disclaimer: Articles listed in the Advanced Molecular Detection Clips are selected by Public Health Genomics Branch to provide current awareness of the scientific literature and news. Inclusion in the clips does not necessarily represent the views of the Centers for Disease Control and Prevention nor does it imply endorsement of the article's methods or findings. CDC and DHHS assume no responsibility for the factual accuracy of the items presented. The selection, omission, or content of items does not imply any endorsement or other position taken by CDC or DHHS. Opinion, findings and conclusions expressed by the original authors of items included in the Clips, or persons quoted therein, are strictly their own and are in no way meant to represent the opinion or views of CDC or DHHS. References to publications, news sources, and non-CDC Websites are provided solely for informational purposes and do not imply endorsement by CDC or DHHS.
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