Advanced Molecular Detection Clips Content (Published on 10/08/2015)
CONCEPTS / COMMENTS
Genomic cloud computing: legal and ethical points to consider.
Dove Edward S et al. European journal of human genetics : EJHG 2015 Oct (10) 1271-8
Neglected Tropical Diseases in the Post-Genomic Era.
Buscaglia Carlos A et al. Trends in genetics : TIG 2015 Oct (10) 539-55
METHODS / TOOLS
Enhanced virome sequencing through solution-based capture enrichment.
Wylie Todd N et al. Genome research 2015 Sep
Analysis of the Molecular Evolution of the Mycobacterium Tuberculosis Drug-Resistant Gene rpoB in Asia Using a Bayesian Evolutionary Method.
Xu Guangyu et al. Clinical laboratory 2015 (8) 1017-25
The 2012 ABRF Proteomic Research Group Study: Assessing Longitudinal Intra-Laboratory Variability in Routine Peptide Liquid Chromatography Tandem Mass Spectrometry Analyses.
Bennett Keiryn L et al. Molecular & cellular proteomics : MCP 2015 Oct
Qualimap 2: advanced multi-sample quality control for high-throughput sequencing data.
Okonechnikov Konstantin et al. Bioinformatics (Oxford, England) 2015 Oct
An extended single-index multiplexed 16S rRNA sequencing for microbial community analysis on MiSeq illumina platforms.
Derakhshani Hooman et al. Journal of basic microbiology 2015 Oct
LFQC: a lossless compression algorithm for FASTQ files.
Nicolae Marius et al. Bioinformatics (Oxford, England) 2015 Jun
Bandage: interactive visualization of de novo genome assemblies.
Wick Ryan R et al. Bioinformatics (Oxford, England) 2015 Jun
ISMapper: identifying transposase insertion sites in bacterial genomes from short read sequence data.
Hawkey Jane et al. BMC genomics 2015 667
EVOLUTION / ECOLOGY / POPULATIONS
Complete Genome Sequence of Strain H5989 of a Novel Devosia Species.
Nicholson Ainsley C et al. Genome announcements 2015 (5)
Genetic diversity and evolutionary insights of respiratory syncytial virus A ON1 genotype: global and local transmission dynamics.
Duvvuri Venkata R et al. Scientific reports 2015 14268
Whole-genome sequencing of KSHV from Zambian Kaposi's sarcoma biopsies reveals unique viral diversity.
Olp Landon N et al. Journal of virology 2015 Sep
North American tree squirrels and ground squirrels with overlapping ranges host different Cryptosporidium species and genotypes.
Stenger Brianna L S et al. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2015 Oct
Genetic diversity of clinical Mycobacterium avium subsp. hominissuis and Mycobacterium intracellulare isolates causing pulmonary diseases recovered from different geographical regions.
Ichikawa Kazuya et al. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2015 Oct
A Retrospective Study on Genetic Heterogeneity within Treponema Strains: Subpopulations Are Genetically Distinct in a Limited Number of Positions.
Cejková Darina et al. PLoS neglected tropical diseases 2015 Oct (10) e0004110
Rabovirus: a proposed new picornavirus genus that is phylogenetically basal to enteroviruses and sapeloviruses.
Ng Terry Fei Fan et al. Archives of virology 2015 Oct (10) 2569-75
Eco-epidemiological study of an endemic Chagas disease region in northern Colombia reveals the importance of Triatoma maculata (Hemiptera: Reduviidae), dogs and Didelphis marsupialis in Trypanosoma cruzi maintenance.
Cantillo-Barraza Omar et al. Parasites & vectors 2015 (1) 482
PATHOGENICITY / ANTIMICROBIAL RESISTANCE
Antimicrobial Resistance and Molecular Investigation of H2S-Negative Salmonella enterica subsp. enterica serovar Choleraesuis Isolates in China.
Xie Jing et al. PloS one 2015 (10) e0139115
Epidemiology and Genomics of Invasive Nontyphoidal Salmonella Infections in Kenya.
Kariuki Samuel et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2015 Nov S317-24
DETECTION / DIAGNOSIS
rpoB gene high-resolution melt curve analysis: a rapid approach for diagnosis and screening of drug resistance in tuberculous meningitis.
Sharma Kusum et al. Diagnostic microbiology and infectious disease 2015 Oct (2) 144-9
Conservation of nucleotide sequences for molecular diagnosis of Middle East respiratory syndrome (MERS) coronavirus, 2015.
Furuse Yuki et al. International journal of infectious diseases : IJID : official publication of the International Society for Infectious Diseases 2015 Sep
PCR method for the rapid detection and discrimination of Legionella spp. based on the amplification of pcs, pmtA, and 16S rRNA genes.
Janczarek Monika et al. Journal of applied genetics 2015 Sep
Molecular analysis of clinical isolates previously diagnosed as Mycobacterium intracellulare reveals incidental findings of "Mycobacterium indicus pranii" genotypes in human lung infection.
Kim Su-Young et al. BMC infectious diseases 2015 (1) 406
Next-Generation Sequencing for Infectious Disease Diagnosis and Management: A Report of the Association for Molecular Pathology.
Lefterova Martina I et al. The Journal of molecular diagnostics : JMD 2015 Sep
Rapid detection of Acinetobacter baumannii and molecular epidemiology of carbapenem-resistant A. baumannii in two comprehensive hospitals of Beijing, China.
Li Puyuan et al. Frontiers in microbiology 997
EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION
The contribution of epidemiological predictors in unravelling the phylogeographic history of HIV-1 subtype C in Brazil.
Gräf Tiago et al. Journal of virology 2015 Sep
Genomic Epidemiology of USA300 Methicillin-Resistant Staphylococcus aureus in an Urban Community.
Popovich Kyle J et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2015 Sep
Enhanced HIV-1 surveillance using molecular epidemiology to study and monitor HIV-1 outbreaks among intravenous drug users (IDUs) in Athens and Bucharest.
Paraskevis Dimitrios et al. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2015 Oct 109-21
Genomic dissection of the 1994 Cronobacter sakazakii outbreak in a French neonatal intensive care unit.
Masood Naqash et al. BMC genomics 2015 (1) 750
Phylogenetic and epidemiological analysis of measles outbreaks in Denmark, 2013 to 2014.
Rasmussen Lasse Dam et al. Euro surveillance : bulletin Europe´en sur les maladies transmissibles = European communicable disease bulletin 2015 Oct (39)
Source investigation of two outbreaks of skin and soft tissue infection by Mycobacterium abscessus subsp. abscessus in Venezuela.
Torres-Coy J A et al. Epidemiology and infection 2015 Oct 1-4
Molecular Approaches to Understanding Transmission and Source Attribution in Nontyphoidal Salmonella and Their Application in Africa.
Mather Alison E et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2015 Nov S259-65
ANTIMICROBIALS / VACCINES / INTERVENTIONS
A Randomized Clinical Trial Comparing Use of Rapid Molecular Testing for Staphylococcus aureus for Patients With Cutaneous Abscesses in the Emergency Department With Standard of Care.
May Larissa S et al. Infection control and hospital epidemiology 2015 Aug 1-8
Comparative genomic analysis of human Chlamydia pneumoniae isolates from respiratory, brain and cardiac tissues.
Roulis Eileen et al. Genomics 2015 Sep
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