Advanced Molecular Detection Clips Content (Published on 10/06/2016)
CDC Scales Up Use of NGS Technologies, Publishes First WGS Sequencing Data
Newbern E. GenomeWeb, Oct 3, 2016.
DNA Sequencing: From Tedious to Automatic
Offord C. The Scientist, Oct 1, 2016.
Host Genetics Influence Composition of Human Gut Microbiome
GenomeWeb, Oct 3, 2016.
HHS sponsors next-generation genetic sequencing platform
(news release) HHS, Sep 30, 2016.
Cows Engineered with Human Genes Could Stop Our Next Disease Outbreak
Mullin E. MIT Tech Rev, Oct 4, 2016.
EVENTS / TRAINING / WEB RESOURCES
Combating Zika Virus with Synthetic Biology and Genome Editing
(webinar) The Scientist (sponsor), Oct 12, 2:30-4:00 pm.
CONCEPTS / COMMENTS
Bacteria and Humans Have Been Swapping DNA for Millennia
Robinson K, Hotopp JD. The Scientist, Oct 1, 2016.
Democratic databases: science on GitHub
Perkel J. Nature, Oct 3, 2016.
METHODS / TOOLS
Rescue of the 1947 Zika Virus Prototype Strain with a Cytomegalovirus Promoter-Driven cDNA Clone.
Schwarz Megan C et al. mSphere (5)
Computational approach for predicting the conserved B-cell epitopes of hemagglutinin H7 subtype influenza virus.
Wang Xiangyu et al. Experimental and therapeutic medicine 2016 Oct (4) 2439-2446
EVOLUTION / ECOLOGY / POPULATIONS
Genomic Analysis Reveals Novel Diversity among the 1976 Philadelphia Legionnaires' Disease Outbreak Isolates and Additional ST36 Strains.
Mercante Jeffrey W et al. PloS one 2016 9 (9) e0164074
The molecular epidemiology and antimicrobial resistance of Neisseria gonorrhoeae in Australia: a nationwide cross-sectional study, 2012.
Trembizki Ella et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2016 Sep
An extended genotyping framework for Salmonella enterica serovar Typhi, the cause of human typhoid.
Wong Vanessa K et al. Nature communications 2016 Oct 12827
Molecular Typing of Legionella pneumophila Isolates in the Province of Quebec from 2005 to 2015.
Lévesque Simon et al. PloS one 2016 (10) e0163818
Evolutionary History and Ongoing Transmission of Phylogenetic Sublineages of Mycobacterium tuberculosis Beijing Genotype in China.
Yin Qing-Qin et al. Scientific reports 34353
An Ecological Framework of the Human Virome Provides Classification of Current Knowledge and Identifies Areas of Forthcoming Discovery.
Parker Michael T et al. The Yale journal of biology and medicine 2016 Sep (3) 339-351
First detection of natural infection of Aedes aegypti with Zika virus in Brazil and throughout South America.
Ferreira-de-Brito Anielly et al. Memorias do Instituto Oswaldo Cruz 2016 Oct 0
Molecular Characterization and Viral Origin of the 2015 Dengue Outbreak in Xishuangbanna, Yunnan, China.
Zhao Yujiao et al. Scientific reports 34444
South-east Asian Zika virus strain linked to cluster of cases in Singapore, August 2016.
Maurer-Stroh Sebastian et al. Euro surveillance : bulletin Europe´en sur les maladies transmissibles = European communicable disease bulletin 2016 Sep (38)
Characterization of four vaccine-related polioviruses including two intertypic type 3/type 2 recombinants associated with aseptic encephalitis.
Liu Jiansheng et al. Virology journal (1) 162
PATHOGENICITY / ANTIMICROBIAL RESISTANCE
Distribution of ESBLs, AmpC β-lactamases and carbapenemases among Enterobacteriaceae isolates causing intra-abdominal and urinary tract infections in the Asia-Pacific region during 2008-14: results from the Study for Monitoring Antimicrobial Resistance Trends (SMART).
Jean Shio-Shin et al. The Journal of antimicrobial chemotherapy 2016 Oct
Distribution of Campylobacter jejuni multilocus sequence types isolated from chickens in Poland.
Wieczorek K et al. Poultry science 2016 Oct
Emergence of Oxacillinases in Environmental Carbapenem-Resistant Acinetobacter baumannii Associated with Clinical Isolates.
Goic-Barisic Ivana et al. Microbial drug resistance (Larchmont, N.Y.) 2016 Oct (7) 559-563
Multilocus sequence typing of Campylobacter concisus from Danish diarrheic patients.
Nielsen Hans Linde et al. Gut pathogens 2016 44
The evolution of antimicrobial peptide resistance in Pseudomonas aeruginosa is shaped by strong epistatic interactions.
Jochumsen Nicholas et al. Nature communications 2016 Oct 13002
Genetic and Phenotypic Characterization of a Salmonella enterica serovar Enteritidis Emerging Strain with Superior Intra-macrophage Replication Phenotype.
Shomer Inna et al. Frontiers in microbiology 2016 1468
Full Genome Sequence and sfRNA Interferon Antagonist Activity of Zika Virus from Recife, Brazil.
Donald Claire L et al. PLoS neglected tropical diseases 2016 Oct (10) e0005048
Resistance in human pathogenic yeasts and filamentous fungi: prevalence, underlying molecular mechanisms and link to the use of antifungals in humans and the environment.
Jensen Rasmus Hare et al. Danish medical journal 2016 Oct (10)
DETECTION / DIAGNOSIS
Helicobacter pylori DNA isolation in the stool: an essential pre-requisite for bacterial noninvasive molecular analysis.
Giorgio Floriana et al. Scandinavian journal of gastroenterology 2016 Aug 1-4
Laboratory Diagnosis of Central Nervous System Infection.
He Taojun et al. Current infectious disease reports 2016 Nov (11) 35
Universal microbial diagnostics using random DNA probes
Aghazadeh A, et al. Sci Adv, Sep 28, 2016.
Contemporary challenges and opportunities in the diagnosis and outbreak detection of multidrug-resistant infectious disease.
Cimmino Teresa et al. Expert review of molecular diagnostics 2016 Oct
A Field-Deployable Reverse Transcription Recombinase Polymerase Amplification Assay for Rapid Detection of the Chikungunya Virus.
Patel Pranav et al. PLoS neglected tropical diseases 2016 Sep (9) e0004953
Mobile real-time surveillance of Zika virus in Brazil.
Faria Nuno Rodrigues et al. Genome medicine (1) 97
Performance of a real-time PCR-based approach and droplet digital PCR in detecting human parechovirus type 3 RNA.
Aizawa Yuta et al. Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology 2016 Sep 27-31
A New Aspergillus fumigatus Typing Method Based on Hypervariable Tandem Repeats Located within Exons of Surface Protein Coding Genes (TRESP).
Garcia-Rubio Rocio et al. PloS one 2016 (10) e0163869
Towards a consensus on genotyping schemes for surveillance and outbreak investigations of Cryptosporidium, Berlin, June 2016.
Chalmers R M et al. Euro surveillance : bulletin Europe´en sur les maladies transmissibles = European communicable disease bulletin 2016 Sep (37)
Quality Evaluation for the Surveillance System of Human Prion Diseases in China Based on the Data from 2010 to 2016.
Shi Qi et al. Prion 2016 Oct 0
Diagnosing Sporadic Creutzfeldt-Jakob Disease by the Detection of Abnormal Prion Protein in Patient Urine.
Luk Connie et al. JAMA neurology 2016 Oct
EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION
Energy Conservation and the Promotion of Legionella pneumophila Growth: The Probable Role of Heat Exchangers in a Nosocomial Outbreak.
Bédard Emilie et al. Infection control and hospital epidemiology 2016 Sep 1-6
Isolation, enumeration and whole genome sequencing of Listeria monocytogenes in stone fruits linked to a multistate outbreak.
Chen Yi et al. Applied and environmental microbiology 2016 Sep
Whole Genome Sequence Analysis of a Large Isoniazid-Resistant Tuberculosis Outbreak in London: A Retrospective Observational Study.
Casali Nicola et al. PLoS medicine 2016 Oct (10) e1002137
Epidemiological and molecular investigation of a rubella outbreak, Romania, 2011 to 2012.
Lazar Mihaela et al. Euro surveillance : bulletin Europe´en sur les maladies transmissibles = European communicable disease bulletin 2016 Sep (38)
Evolutionary Dynamics and Complicated Genetic Transmission Network Patterns of HIV-1 CRF01_AE among MSM in Shanghai, China.
Li Xiaoshan et al. Scientific reports 2016 Oct 34729
ANTIMICROBIALS / VACCINES / INTERVENTIONS
Use of computational and recombinant technologies for developing novel influenza vaccines.
Wong Terianne M et al. Expert review of vaccines 2016 (1) 41-51
Exome Sequencing Reveals Primary Immunodeficiencies in Children with Community-Acquired Pseudomonas aeruginosa Sepsis.
Asgari Samira et al. Frontiers in immunology 2016 357
Association between high expression macrophage migration inhibitory factor (MIF) alleles and West Nile virus encephalitis.
Das Rituparna et al. Cytokine 2016 Feb 51-4
Multi-Omics Studies towards Novel Modulators of Influenza A Virus-Host Interaction.
Söderholm Sandra et al. Viruses (10)
The effect of host genetics on the gut microbiome.
Bonder Marc Jan et al. Nature genetics 2016 Oct
Distinct Ecological Niche of Anal, Oral, and Cervical Mucosal Microbiomes in Adolescent Women.
Smith Benjamin C et al. The Yale journal of biology and medicine 2016 Sep (3) 277-284
Association of host genome with intestinal microbial composition in a large healthy cohort.
Turpin Williams et al. Nature genetics 2016 Oct
Disclaimer: Articles listed in the Advanced Molecular Detection Clips are selected by the CDC Office of Genomics and Precision Public Health to provide current awareness of the scientific literature and news. Inclusion in the clips does not necessarily represent the views of the Centers for Disease Control and Prevention nor does it imply endorsement of the article's methods or findings. CDC and DHHS assume no responsibility for the factual accuracy of the items presented. The selection, omission, or content of items does not imply any endorsement or other position taken by CDC or DHHS. Opinion, findings and conclusions expressed by the original authors of items included in the Clips, or persons quoted therein, are strictly their own and are in no way meant to represent the opinion or views of CDC or DHHS. References to publications, news sources, and non-CDC Websites are provided solely for informational purposes and do not imply endorsement by CDC or DHHS.
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