Advanced Molecular Detection Clips Content (Published on 10/05/2017)
FDA, GWU Push Data Sharing With New 'BioCompute Object' Standard
GenomeWeb, Sep 29, 2017.
FDAs Scott Gottlieb: LDTs are no longer a mom-and-pop industry and need legislative approach
Parmar A. MedCity News, Sep 26, 2017.
MIT-Led Team Develops Rapid Dipstick Test for Zika, Dengue
360dx, Sep 27, 2017.
The Zika Virus Grew Deadlier With a Small Mutation, Study Suggests
Belluck P, McNeil DG Jr. New York Times, Sep 28, 2017.
DNA-Delivered Antibodies Fight Off Lethal Bacterial Infection
Offord C. The Scientist, Oct 3, 2017.
Do Pathogens Gain Virulence as Hosts Become More Resistant?
Read AF, Kerr PJ. The Scientist, Oct 1, 2017.
Genetically modified approaches to fighting malaria succeed in new tests
Wan S. Washington Post, Sep 28, 2017.
The microbes in a mosquitos gut may help fight malaria
Servick K. Science, Sep 28, 2017.
Researchers discover new animal hosts for Chagas disease vectors
Healio, Sep 27, 2017.
International Team Suggests Standardized DNA Extraction Method for Fecal Microbiome Studies
GenomeWeb, Oct 2, 2017.
New Data on Microbiome Triples Number of Identified Bacterial Genes
Clinical Omics, Oct 3, 2017
EVENTS / TRAINING / WEB RESOURCES
The rise of whole genome microbial sequencing: A new era for human microbiome analysis
(on-demand webinar) Segre J, Pollard K. Science, Sep 29, 2017.
Science in Emergency Response at CDC: Structure and Functions.
Iskander John et al. American journal of public health 2017 Sep (S2) S122-S125
CONCEPTS / COMMENTS
Ethical challenges for international collaborative research partnerships in the context of the Zika outbreak in the Dominican Republic: a qualitative case study.
Canario Guzmán Julio Arturo et al. Health research policy and systems 2017 Sep (1) 82
Conducting Science in Disasters: Recommendations from the NIEHS Working Group for Special IRB Considerations in the Review of Disaster Related Research.
Packenham Joan P et al. Environmental health perspectives 2017 Sep (9) 094503
The preprint dilemma
Kaiser J. Science, Sep 29, 2017.
METHODS / TOOLS
Towards standards for human fecal sample processing in metagenomic studies.
Costea Paul I et al. Nature biotechnology 2017 Oct
Critical Assessment of Metagenome Interpretation-a benchmark of metagenomics software.
Sczyrba Alexander et al. Nature methods 2017 Oct
PhyloGeoTool: interactively exploring large phylogenies in an epidemiological context.
Libin Pieter et al. Bioinformatics (Oxford, England) 2017 Aug
Designing small universal k-mer hitting sets for improved analysis of high-throughput sequencing.
Orenstein Yaron et al. PLoS computational biology 2017 Oct (10) e1005777
Epidemiology of transmissible diseases: Array hybridization and next generation sequencing as universal nucleic acid-mediated typing tools.
Michael Dunne W et al. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2017 Sep
Ten simple rules for structuring papers.
Mensh Brett et al. PLoS computational biology 2017 Sep (9) e1005619
EVOLUTION / ECOLOGY / POPULATIONS
Mutation and recombination in pathogen evolution: Relevance, methods and controversies.
Arenas Miguel et al. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2017 Sep
Evolutionary genotypes of influenza A (H7N9) viruses over five epidemic waves in China.
Ding Xiao et al. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2017 Sep 269-276
Assessment of Molecular, Antigenic, and Pathological Features of Canine Influenza A(H3N2) Viruses That Emerged in the United States.
Pulit-Penaloza Joanna A et al. The Journal of infectious diseases 2017 Sep (suppl_4) S499-S507
High-resolution phylogeny providing insights towards the epidemiology, zoonotic aspects and taxonomy of sapoviruses.
Barry A F et al. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2017 Sep
The diversity of the Chagas parasite, Trypanosoma cruzi, infecting the main Central American vector, Triatoma dimidiata, from Mexico to Colombia.
Dorn Patricia L et al. PLoS neglected tropical diseases 2017 Sep (9) e0005878
Genomic analyses of African Trypanozoon strains to assess evolutionary relationships and identify markers for strain identification.
Richardson Joshua Brian et al. PLoS neglected tropical diseases 2017 Sep (9) e0005949
Accurate identification of Anopheles gambiae Giles trophic preferences by MALDI-TOF MS.
Niare Sirama et al. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2017 Sep
PATHOGENICITY / ANTIMICROBIAL RESISTANCE
Identification and characterization of the novel colonization factor CS30 based on whole genome sequencing in enterotoxigenic Escherichia coli (ETEC).
Mentzer Astrid von et al. Scientific reports 2017 Oct (1) 12514
Comparative genomic analysis and in vivo modelling of Streptococcus pneumoniae ST3081 and ST618 isolates reveal key genetic and phenotypic differences contributing to clonal replacement of serotype 1 in The Gambia.
Bricio-Moreno Laura et al. The Journal of infectious diseases 2017 Sep
Novel multiresistance cfr plasmids in linezolid-resistant methicillin-resistant Staphylococcus epidermidis and vancomycin-resistant Enterococcus faecium (VRE) from a hospital outbreak: co-location of cfr and optrA in VRE.
Lazaris Alexandros et al. The Journal of antimicrobial chemotherapy 2017 Aug
Food poisoning outbreak in Tokyo, Japan caused by Staphylococcus argenteus.
Suzuki Yasunori et al. International journal of food microbiology 2017 Sep 31-37
Drug Susceptibility Evaluation of an Influenza A(H7N9) Virus by Analyzing Recombinant Neuraminidase Proteins.
Gubareva Larisa V et al. The Journal of infectious diseases 2017 Sep (suppl_4) S566-S574
DETECTION / DIAGNOSIS
Potential testing of reprocessing procedures by real-time polymerase chain reaction: A multicenter study of colonoscopy devices.
Valeriani Federica et al. American journal of infection control 2017 Sep
Rapid pathogen-specific phenotypic antibiotic susceptibility testing using digital LAMP quantification in clinical samples
Schoepp NG, et al. Sci Transl Med, Oct 4, 2017.
Comparison of three multiplex gastrointestinal platforms for the detection of gastroenteritis viruses.
Chhabra Preeti et al. Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology 2017 Oct 66-71
Rapid antigen tests for dengue virus serotypes and Zika virus in patient serum.
Bosch Irene et al. Science translational medicine 2017 Sep (409)
Rhinovirus Viremia in Patients Hospitalized with Community Acquired Pneumonia.
Lu Xiaoyan et al. The Journal of infectious diseases 2017 Aug
O-5S quantitative real-time PCR: a new diagnostic tool for laboratory confirmation of human onchocerciasis.
Mekonnen Solomon A et al. Parasites & vectors 2017 Oct (1) 451
EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION
Epidemiological characterization of a nosocomial outbreak of extended spectrum β-lactamase Escherichia coli ST-131 confirms the clinical value of core genome multilocus sequence typing.
Woksepp Hanna et al. APMIS : acta pathologica, microbiologica, et immunologica Scandinavica 2017 Sep
Covert dissemination of carbapenemase-producing Klebsiella pneumoniae (KPC) in a successfully controlled outbreak: long- and short-read whole-genome sequencing demonstrate multiple genetic modes of transmission.
Martin Jessica et al. The Journal of antimicrobial chemotherapy 2017 Aug
Estimating time of HIV-1 infection from next-generation sequence diversity.
Puller Vadim et al. PLoS computational biology 2017 Oct (10) e1005775
ANTIMICROBIALS / VACCINES / INTERVENTIONS
Safety and Immunogenicity of an Anti-Zika Virus DNA Vaccine - Preliminary Report.
Tebas Pablo et al. The New England journal of medicine 2017 Oct
Genetic susceptibility to infectious diseases: Current status and future perspectives from genome-wide approaches.
Mozzi Alessandra et al. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2017 Sep
Pathogen lineage-based genome-wide association study identified CD53 as susceptible locus in tuberculosis.
Omae Yosuke et al. Journal of human genetics 2017 Sep
Evaluating the impact of functional genetic variation on HIV-1 control.
McLaren Paul J et al. The Journal of infectious diseases 2017 Sep
Toll like receptor7 polymorphisms in relation to disease susceptibility and progression in Chinese patients with chronic HBV infection.
Zhu Junping et al. Scientific reports 2017 Sep (1) 12417
Marked variation in prevalence of malaria-protective human genetic polymorphisms across Uganda.
Walakira Andrew et al. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2017 Sep
Changes in the microbiota cause genetically modified Anopheles to spread in a population.
Pike Andrew et al. Science (New York, N.Y.) 2017 Sep (6358) 1396-1399
A longitudinal study of the infant nasopharyngeal microbiota: The effects of age, illness and antibiotic use in a cohort of South East Asian children.
Salter Susannah J et al. PLoS neglected tropical diseases 2017 Oct (10) e0005975
Disclaimer: Articles listed in the Advanced Molecular Detection Clips are selected by Public Health Genomics Branch to provide current awareness of the scientific literature and news. Inclusion in the clips does not necessarily represent the views of the Centers for Disease Control and Prevention nor does it imply endorsement of the article's methods or findings. CDC and DHHS assume no responsibility for the factual accuracy of the items presented. The selection, omission, or content of items does not imply any endorsement or other position taken by CDC or DHHS. Opinion, findings and conclusions expressed by the original authors of items included in the Clips, or persons quoted therein, are strictly their own and are in no way meant to represent the opinion or views of CDC or DHHS. References to publications, news sources, and non-CDC Websites are provided solely for informational purposes and do not imply endorsement by CDC or DHHS.
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